Email l.a.kelley@imperial.ac.uk Description Q47319 Date Thu Jan 5 12:36:46 GMT 2012 Unique Job ID 50aacaf3b68994f6

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1rk8C_ 53.4 67 PDB header:translation Chain: C: PDB Molecule:within the bgcn gene intron protein; PDBTitle: structure of the cytosolic protein pym bound to the mago-2 y14 core of the exon junction complex 2 d1rk8c_ 53.4 67 Fold:WW domain-like Superfamily:Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain Family:Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain 3 d1xrxa1 40.6 23 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:SeqA N-terminal domain-like 4 c1xrxD_ 40.6 23 PDB header:replication inhibitor Chain: D: PDB Molecule:seqa protein; PDBTitle: crystal structure of a dna-binding protein 5 c3mopC_ 32.1 20 PDB header:signaling protein, immune system Chain: C: PDB Molecule:myeloid differentiation primary response protein myd88; PDBTitle: the ternary death domain complex of myd88, irak4, and irak2 6 c3c6fD_ 30.7 7 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:yetf protein; PDBTitle: crystal structure of protein bsu07140 from bacillus subtilis 7 d2dofa1 22.5 22 Fold:Another 3-helical bundle Superfamily:FF domain Family:FF domain 8 c3bvoA_ 22.3 29 PDB header:chaperone Chain: A: PDB Molecule:co-chaperone protein hscb, mitochondrial precursor; PDBTitle: crystal structure of human co-chaperone protein hscb 9 d1ffya1 22.2 27 Fold:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Superfamily:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Family:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 10 d2dara2 20.0 31 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 11 d1yuda1 18.2 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YML079-like 12 c3lzzB_ 15.5 6 PDB header:unknown function Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structures of cupin superfamily bbduf985 from branchiostoma2 belcheri tsingtauense in apo and gdp-bound forms 13 d1esza_ 15.2 13 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Periplasmic ferric siderophore binding protein FhuD 14 d2apob1 14.8 28 Fold:Rubredoxin-like Superfamily:Nop10-like SnoRNP Family:Nucleolar RNA-binding protein Nop10-like 15 c2kiqA_ 14.8 14 PDB header:transcription regulator Chain: A: PDB Molecule:transcription elongation regulator 1; PDBTitle: solution structure of the ff domain 2 of human transcription2 elongation factor ca150 16 c2knqA_ 13.4 20 PDB header:protein transport Chain: A: PDB Molecule:general secretion pathway protein h; PDBTitle: solution structure of e.coli gsph 17 d1ctla1 13.3 27 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 18 d2vkva2 13.3 12 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 19 d1imla1 13.1 17 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 20 d1ibia1 12.1 38 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 21 c2elpA_ not modelled 11.8 20 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 406; PDBTitle: solution structure of the 13th c2h2 zinc finger of human2 zinc finger protein 406 22 c2a7yA_ not modelled 11.6 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein rv2302/mt2359; PDBTitle: solution structure of the conserved hypothetical protein2 rv2302 from the bacterium mycobacterium tuberculosis 23 d2a7ya1 not modelled 11.6 25 Fold:SH3-like barrel Superfamily:Cell growth inhibitor/plasmid maintenance toxic component Family:Rv2302-like 24 d2etva1 not modelled 11.2 6 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:TM0189-like 25 d2ey4e1 not modelled 10.4 31 Fold:Rubredoxin-like Superfamily:Nop10-like SnoRNP Family:Nucleolar RNA-binding protein Nop10-like 26 c2yetB_ not modelled 10.2 18 PDB header:hydrolase Chain: B: PDB Molecule:gh61 isozyme a; PDBTitle: thermoascus gh61 isozyme a 27 c2nrrA_ not modelled 10.0 20 PDB header:hydrolase Chain: A: PDB Molecule:uvrabc system protein c; PDBTitle: crystal structure of the c-terminal rnaseh endonuclase2 domain of uvrc 28 c2kfdA_ not modelled 10.0 32 PDB header:nuclear protein Chain: A: PDB Molecule:pre-mrna-processing protein prp40; PDBTitle: prp40 ff4 domain 29 d1v95a_ not modelled 9.7 8 Fold:Anticodon-binding domain-like Superfamily:Class II aaRS ABD-related Family:Anticodon-binding domain of Class II aaRS 30 d2afaa1 not modelled 9.5 7 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:N-acylglucosamine (NAG) epimerase 31 d1zbdb_ not modelled 9.1 19 Fold:FYVE/PHD zinc finger Superfamily:FYVE/PHD zinc finger Family:FYVE, a phosphatidylinositol-3-phosphate binding domain 32 c2iy3A_ not modelled 9.0 11 PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome 33 c2rr7A_ not modelled 8.9 36 PDB header:motor protein Chain: A: PDB Molecule:dynein heavy chain 9; PDBTitle: microtubule binding domain of dynein-c 34 d2ewoa1 not modelled 8.8 12 Fold:Pentein, beta/alpha-propeller Superfamily:Pentein Family:Porphyromonas-type peptidylarginine deiminase 35 c3n43B_ not modelled 8.6 58 PDB header:viral protein Chain: B: PDB Molecule:e2 envelope glycoprotein; PDBTitle: crystal structures of the mature envelope glycoprotein complex2 (trypsin cleavage) of chikungunya virus. 36 c2hw4A_ not modelled 8.5 21 PDB header:structural genomics, hydrolase Chain: A: PDB Molecule:14 kda phosphohistidine phosphatase; PDBTitle: crystal structure of human phosphohistidine phosphatase 37 d2cu8a1 not modelled 8.4 20 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 38 c2xfbI_ not modelled 8.4 58 PDB header:virus Chain: I: PDB Molecule:e2 envelope glycoprotein; PDBTitle: the chikungunya e1 e2 envelope glycoprotein complex fit into2 the sindbis virus cryo-em map 39 c3mhsE_ not modelled 8.4 40 PDB header:hydrolase/transcription regulator/protei Chain: E: PDB Molecule:saga-associated factor 73; PDBTitle: structure of the saga ubp8/sgf11/sus1/sgf73 dub module bound to2 ubiquitin aldehyde 40 d1lf6a2 not modelled 8.3 23 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Bacterial glucoamylase N-terminal domain-like 41 c2k85A_ not modelled 8.2 16 PDB header:protein binding Chain: A: PDB Molecule:glucocorticoid receptor dna-binding factor 1; PDBTitle: p190-a rhogap ff1 domain 42 c2iv0A_ not modelled 8.2 9 PDB header:oxidoreductase Chain: A: PDB Molecule:isocitrate dehydrogenase; PDBTitle: thermal stability of isocitrate dehydrogenase from2 archaeoglobus fulgidus studied by crystal structure3 analysis and engineering of chimers 43 c2hfvA_ not modelled 8.0 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein rpa1041; PDBTitle: solution nmr structure of protein rpa1041 from pseudomonas2 aeruginosa. northeast structural genomics consortium3 target pat90. 44 c1qu2A_ not modelled 7.8 27 PDB header:ligase/rna Chain: A: PDB Molecule:isoleucyl-trna synthetase; PDBTitle: insights into editing from an ile-trna synthetase structure2 with trna(ile) and mupirocin 45 d1xo1a2 not modelled 7.6 27 Fold:PIN domain-like Superfamily:PIN domain-like Family:5' to 3' exonuclease catalytic domain 46 d1ulva4 not modelled 7.6 25 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Bacterial glucoamylase N-terminal domain-like 47 c3errB_ not modelled 7.4 10 PDB header:ligase Chain: B: PDB Molecule:fusion protein of microtubule binding domain from PDBTitle: microtubule binding domain from mouse cytoplasmic dynein as2 a fusion with seryl-trna synthetase 48 d1kl7a_ not modelled 7.4 12 Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes 49 c3muwU_ not modelled 7.1 42 PDB header:virus Chain: U: PDB Molecule:structural polyprotein; PDBTitle: pseudo-atomic structure of the e2-e1 protein shell in sindbis virus 50 d2doea1 not modelled 6.9 10 Fold:Another 3-helical bundle Superfamily:FF domain Family:FF domain 51 c2ofqA_ not modelled 6.9 14 PDB header:protein transport/protein transport Chain: A: PDB Molecule:trao; PDBTitle: nmr solution structure of a complex between the virb9/virb72 interaction domains of the pkm101 type iv secretion system 52 d1ryqa_ not modelled 6.9 15 Fold:Rubredoxin-like Superfamily:RNA polymerase subunits Family:RpoE2-like 53 c3k7bA_ not modelled 6.7 40 PDB header:viral protein Chain: A: PDB Molecule:protein a33; PDBTitle: the structure of the poxvirus a33 protein reveals a dimer of unique c-2 type lectin-like domains. 54 c3kepA_ not modelled 6.7 15 PDB header:protein transport, rna binding protein Chain: A: PDB Molecule:nucleoporin nup145; PDBTitle: crystal structure of the autoproteolytic domain from the2 nuclear pore complex component nup145 from saccharomyces3 cerevisiae 55 d1pn0a2 not modelled 6.6 8 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 56 c3chxG_ not modelled 6.5 67 PDB header:membrane protein Chain: G: PDB Molecule:pmoc; PDBTitle: crystal structure of methylosinus trichosporium ob3b2 particulate methane monooxygenase (pmmo) 57 c3n40P_ not modelled 6.5 58 PDB header:viral protein Chain: P: PDB Molecule:p62 envelope glycoprotein; PDBTitle: crystal structure of the immature envelope glycoprotein complex of2 chikungunya virus. 58 c2jyvA_ not modelled 6.2 57 PDB header:cytokine Chain: A: PDB Molecule:granulin-2; PDBTitle: human granulin f 59 d1omza_ not modelled 6.1 11 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Exostosin 60 d2hfva1 not modelled 6.0 16 Fold:Ferredoxin-like Superfamily:GlnB-like Family:RPA1041-like 61 d1bpoa1 not modelled 6.0 20 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:Clathrin heavy-chain linker domain 62 c1yewC_ not modelled 5.9 57 PDB header:oxidoreductase, membrane protein Chain: C: PDB Molecule:particulate methane monooxygenase subunit c2; PDBTitle: crystal structure of particulate methane monooxygenase 63 c3g9yA_ not modelled 5.9 29 PDB header:transcription/rna Chain: A: PDB Molecule:zinc finger ran-binding domain-containing protein 2; PDBTitle: crystal structure of the second zinc finger from zranb2/znf265 bound2 to 6 nt ssrna sequence agguaa 64 d2gnra1 not modelled 5.8 29 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:SSO2064-like 65 c2xzn5_ not modelled 5.7 36 PDB header:ribosome Chain: 5: PDB Molecule:ribosomal protein s26e containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 66 d2cqna1 not modelled 5.7 29 Fold:Another 3-helical bundle Superfamily:FF domain Family:FF domain 67 c2nvuB_ not modelled 5.6 29 PDB header:protein turnover, ligase Chain: B: PDB Molecule:maltose binding protein/nedd8-activating enzyme PDBTitle: structure of appbp1-uba3~nedd8-nedd8-mgatp-ubc12(c111a), a2 trapped ubiquitin-like protein activation complex 68 d1j3kc_ not modelled 5.5 7 Fold:Thymidylate synthase/dCMP hydroxymethylase Superfamily:Thymidylate synthase/dCMP hydroxymethylase Family:Thymidylate synthase/dCMP hydroxymethylase 69 d3blza1 not modelled 5.3 20 Fold:Cystatin-like Superfamily:NTF2-like Family:Sbal0622-like 70 c3eabD_ not modelled 5.3 23 PDB header:cell cycle Chain: D: PDB Molecule:spastin; PDBTitle: crystal structure of spastin mit in complex with escrt iii 71 c1ko6A_ not modelled 5.3 18 PDB header:transferase Chain: A: PDB Molecule:nuclear pore complex protein nup98; PDBTitle: crystal structure of c-terminal autoproteolytic domain of2 nucleoporin nup98 72 d1aa7a_ not modelled 5.1 26 Fold:Influenza virus matrix protein M1 Superfamily:Influenza virus matrix protein M1 Family:Influenza virus matrix protein M1 73 d1vkpa_ not modelled 5.1 17 Fold:Pentein, beta/alpha-propeller Superfamily:Pentein Family:Porphyromonas-type peptidylarginine deiminase