Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP31697
DateThu Jan 5 11:48:40 GMT 2012
Unique Job ID50604db8a9414ed2

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1qunA_
Top template information
PDB header:chaperone/structural protein
Chain: A: PDB Molecule:papd-like chaperone fimc;
PDBTitle: x-ray structure of the fimc-fimh chaperone adhesin complex2 from uropathogenic e.coli
Confidence and coverage
Confidence:100.0% Coverage: 83%
200 residues ( 83% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSNKNVNVRKSQEITFCLLAGILMFMAMMVAGRAEAGVALGATRVIYPAGQKQEQLAVTN
Secondary structure 












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Disorder  ????????????



















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   .........70.........80.........90.........100.........110.........120
Sequence  NDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILDATNNQLPQDRESLFW
Secondary structure 




























SS confidence 



























































Disorder 












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   .........130.........140.........150.........160.........170.........180
Sequence  MNVKAIPSMDKSKLTENTLQLAIISRIKLYYRPAKLALPPDQAAEKLRFRRSANSLTLIN
Secondary structure 





















SS confidence 



























































Disorder 





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   .........190.........200.........210.........220.........230.........240
Sequence  PTPYYLTVTELNAGTRVLENALVPPMGESTVKLPSDAGSNITYRTINDYGALTPKMTGVM
Secondary structure 
























SS confidence 



























































Disorder 












???????






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???????
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   .
Sequence  E
Secondary structure 
SS confidence 
Disorder  ?
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1qun chain A

3D model

Region: 37 - 241
Aligned: 200
Modelled: 205
Confidence: 100.0%
Identity: 99%
PDB header:chaperone/structural protein
Chain: A: PDB Molecule:papd-like chaperone fimc;
PDBTitle: x-ray structure of the fimc-fimh chaperone adhesin complex2 from uropathogenic e.coli

Phyre2

PDB 1l4i chain A

3D model

Region: 37 - 240
Aligned: 189
Modelled: 204
Confidence: 100.0%
Identity: 71%
PDB header:chaperone
Chain: A: PDB Molecule:sfae protein;
PDBTitle: crystal structure of the periplasmic chaperone sfae

Phyre2

PDB 2co7 chain B

3D model

Region: 32 - 240
Aligned: 196
Modelled: 209
Confidence: 100.0%
Identity: 35%
PDB header:fibril protein
Chain: B: PDB Molecule:putative fimbriae assembly chaperone;
PDBTitle: salmonella enterica safa pilin in complex with the safb2 chaperone (type ii)

Phyre2

PDB 1z9s chain A

3D model

Region: 33 - 240
Aligned: 195
Modelled: 206
Confidence: 100.0%
Identity: 36%
PDB header:chaperone/immune system
Chain: A: PDB Molecule:chaperone protein caf1m;
PDBTitle: crystal structure of the native chaperone:subunit:subunit2 caf1m:caf1:caf1 complex

Phyre2

PDB 1qpx chain A

3D model

Region: 37 - 240
Aligned: 189
Modelled: 204
Confidence: 100.0%
Identity: 33%
PDB header:chaperone
Chain: A: PDB Molecule:papd chaperone;
PDBTitle: crystal structures of self-capping papd chaperone homodimers

Phyre2

PDB 3f6i chain B

3D model

Region: 37 - 237
Aligned: 181
Modelled: 201
Confidence: 100.0%
Identity: 33%
PDB header:chaperone
Chain: B: PDB Molecule:chaperone protein faee;
PDBTitle: structure of the semet labeled f4 fibrial chaperone faee

Phyre2

PDB 3q48 chain B

3D model

Region: 40 - 240
Aligned: 176
Modelled: 185
Confidence: 100.0%
Identity: 34%
PDB header:chaperone
Chain: B: PDB Molecule:chaperone cupb2;
PDBTitle: crystal structure of pseudomonas aeruginosa cupb2 chaperone

Phyre2

PDB 3bwu chain C domain 1

3D model

Region: 37 - 157
Aligned: 116
Modelled: 121
Confidence: 100.0%
Identity: 100%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: PapD-like
Family: Pilus chaperone

Phyre2

PDB 2j2z chain A domain 1

3D model

Region: 37 - 160
Aligned: 121
Modelled: 124
Confidence: 100.0%
Identity: 36%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: PapD-like
Family: Pilus chaperone

Phyre2

PDB 2co7 chain B domain 1

3D model

Region: 32 - 156
Aligned: 117
Modelled: 125
Confidence: 100.0%
Identity: 39%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: PapD-like
Family: Pilus chaperone

Phyre2

PDB 1l4i chain A domain 1

3D model

Region: 37 - 156
Aligned: 112
Modelled: 120
Confidence: 100.0%
Identity: 79%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: PapD-like
Family: Pilus chaperone

Phyre2

PDB 1p5v chain A domain 1

3D model

Region: 32 - 156
Aligned: 111
Modelled: 125
Confidence: 100.0%
Identity: 42%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: PapD-like
Family: Pilus chaperone

Phyre2

PDB 3bwu chain C domain 2

3D model

Region: 158 - 241
Aligned: 84
Modelled: 84
Confidence: 99.9%
Identity: 100%
Fold: C2 domain-like
Superfamily: Periplasmic chaperone C-domain
Family: Periplasmic chaperone C-domain

Phyre2

PDB 1p5v chain A domain 2

3D model

Region: 157 - 240
Aligned: 79
Modelled: 84
Confidence: 99.9%
Identity: 30%
Fold: C2 domain-like
Superfamily: Periplasmic chaperone C-domain
Family: Periplasmic chaperone C-domain

Phyre2

PDB 1l4i chain A domain 2

3D model

Region: 158 - 240
Aligned: 76
Modelled: 83
Confidence: 99.8%
Identity: 63%
Fold: C2 domain-like
Superfamily: Periplasmic chaperone C-domain
Family: Periplasmic chaperone C-domain

Phyre2

PDB 2co7 chain B domain 2

3D model

Region: 157 - 240
Aligned: 79
Modelled: 84
Confidence: 99.8%
Identity: 29%
Fold: C2 domain-like
Superfamily: Periplasmic chaperone C-domain
Family: Periplasmic chaperone C-domain

Phyre2

PDB 2j2z chain A domain 2

3D model

Region: 161 - 241
Aligned: 78
Modelled: 81
Confidence: 99.7%
Identity: 28%
Fold: C2 domain-like
Superfamily: Periplasmic chaperone C-domain
Family: Periplasmic chaperone C-domain

Phyre2

PDB 1m1s chain A

3D model

Region: 35 - 134
Aligned: 90
Modelled: 99
Confidence: 96.7%
Identity: 16%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: PapD-like
Family: MSP-like

Phyre2

PDB 1row chain A

3D model

Region: 38 - 123
Aligned: 79
Modelled: 86
Confidence: 95.2%
Identity: 10%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: PapD-like
Family: MSP-like

Phyre2

PDB 1grw chain A

3D model

Region: 36 - 153
Aligned: 112
Modelled: 118
Confidence: 94.5%
Identity: 14%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: PapD-like
Family: MSP-like

Phyre2
1

c1qunA_
2

c1l4iA_
3

c2co7B_
4

c1z9sA_
5

c1qpxA_
6

c3f6iB_
7

c3q48B_
8

d3bwuc1
9

d2j2za1
10

d2co7b1
11

d1l4ia1
12

d1p5va1
13

d3bwuc2
14

d1p5va2
15

d1l4ia2
16

d2co7b2
17

d2j2za2
18

d1m1sa_
19

d1rowa_
20

d1grwa_
21



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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1qunA_



100.0 99 PDB header:chaperone/structural protein
Chain: A: PDB Molecule:papd-like chaperone fimc;
PDBTitle: x-ray structure of the fimc-fimh chaperone adhesin complex2 from uropathogenic e.coli
2c1l4iA_



100.0 71 PDB header:chaperone
Chain: A: PDB Molecule:sfae protein;
PDBTitle: crystal structure of the periplasmic chaperone sfae
3c2co7B_



100.0 35 PDB header:fibril protein
Chain: B: PDB Molecule:putative fimbriae assembly chaperone;
PDBTitle: salmonella enterica safa pilin in complex with the safb2 chaperone (type ii)
4c1z9sA_



100.0 36 PDB header:chaperone/immune system
Chain: A: PDB Molecule:chaperone protein caf1m;
PDBTitle: crystal structure of the native chaperone:subunit:subunit2 caf1m:caf1:caf1 complex
5c1qpxA_



100.0 33 PDB header:chaperone
Chain: A: PDB Molecule:papd chaperone;
PDBTitle: crystal structures of self-capping papd chaperone homodimers
6c3f6iB_



100.0 33 PDB header:chaperone
Chain: B: PDB Molecule:chaperone protein faee;
PDBTitle: structure of the semet labeled f4 fibrial chaperone faee
7c3q48B_



100.0 34 PDB header:chaperone
Chain: B: PDB Molecule:chaperone cupb2;
PDBTitle: crystal structure of pseudomonas aeruginosa cupb2 chaperone
8d3bwuc1



100.0 100 Fold:Immunoglobulin-like beta-sandwich
Superfamily:PapD-like
Family:Pilus chaperone
9d2j2za1



100.0 36 Fold:Immunoglobulin-like beta-sandwich
Superfamily:PapD-like
Family:Pilus chaperone
10d2co7b1



100.0 39 Fold:Immunoglobulin-like beta-sandwich
Superfamily:PapD-like
Family:Pilus chaperone
11d1l4ia1



100.0 79 Fold:Immunoglobulin-like beta-sandwich
Superfamily:PapD-like
Family:Pilus chaperone
12d1p5va1



100.0 42 Fold:Immunoglobulin-like beta-sandwich
Superfamily:PapD-like
Family:Pilus chaperone
13d3bwuc2



99.9 100 Fold:C2 domain-like
Superfamily:Periplasmic chaperone C-domain
Family:Periplasmic chaperone C-domain
14d1p5va2



99.9 30 Fold:C2 domain-like
Superfamily:Periplasmic chaperone C-domain
Family:Periplasmic chaperone C-domain
15d1l4ia2



99.8 63 Fold:C2 domain-like
Superfamily:Periplasmic chaperone C-domain
Family:Periplasmic chaperone C-domain
16d2co7b2



99.8 29 Fold:C2 domain-like
Superfamily:Periplasmic chaperone C-domain
Family:Periplasmic chaperone C-domain
17d2j2za2



99.7 28 Fold:C2 domain-like
Superfamily:Periplasmic chaperone C-domain
Family:Periplasmic chaperone C-domain
18d1m1sa_



96.7 16 Fold:Immunoglobulin-like beta-sandwich
Superfamily:PapD-like
Family:MSP-like
19d1rowa_



95.2 10 Fold:Immunoglobulin-like beta-sandwich
Superfamily:PapD-like
Family:MSP-like
20d1grwa_



94.5 14 Fold:Immunoglobulin-like beta-sandwich
Superfamily:PapD-like
Family:MSP-like
21c2qsvA_



not modelled 93.8 11 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of protein of unknown function from porphyromonas2 gingivalis w83
22c1z9oB_



not modelled 92.0 13 PDB header:protein binding/lipid binding protein
Chain: B: PDB Molecule:vesicle-associated membrane protein-associated protein a;
PDBTitle: 1.9 angstrom crystal structure of the rat vap-a msp homology domain in2 complex with the rat orp1 ffat motif
23d1mspa_



not modelled 92.0 13 Fold:Immunoglobulin-like beta-sandwich
Superfamily:PapD-like
Family:MSP-like
24c3qisA_



not modelled 91.4 9 PDB header:hydrolase/protein binding
Chain: A: PDB Molecule:inositol polyphosphate 5-phosphatase ocrl-1;
PDBTitle: recognition of the f&h motif by the lowe syndrome protein ocrl
25c2e6jA_



not modelled 89.6 11 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hydin protein;
PDBTitle: solution structure of the c-terminal papd-like domain from2 human hydin protein
26c3qbtH_



not modelled 88.9 10 PDB header:protein transport/hydrolase
Chain: H: PDB Molecule:inositol polyphosphate 5-phosphatase ocrl-1;
PDBTitle: crystal structure of ocrl1 540-678 in complex with rab8a:gppnhp
27d2vzsa2



not modelled 82.8 14 Fold:Immunoglobulin-like beta-sandwich
Superfamily:beta-Galactosidase/glucuronidase domain
Family:beta-Galactosidase/glucuronidase domain
28c3ac0B_



not modelled 79.3 9 PDB header:hydrolase
Chain: B: PDB Molecule:beta-glucosidase i;
PDBTitle: crystal structure of beta-glucosidase from kluyveromyces marxianus in2 complex with glucose
29d1wica_



not modelled 77.6 11 Fold:Immunoglobulin-like beta-sandwich
Superfamily:PapD-like
Family:MSP-like
30c3ginB_



not modelled 76.9 8 PDB header:metal binding protein
Chain: B: PDB Molecule:sodium/calcium exchanger 1;
PDBTitle: crystal structure of e454k-cbd1
31c2ys4A_



not modelled 69.3 10 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hydrocephalus-inducing protein homolog;
PDBTitle: solution structure of the n-terminal papd-like domain of2 hydin protein from human
32c2qvkA_



not modelled 61.7 8 PDB header:metal binding protein
Chain: A: PDB Molecule:sodium/calcium exchanger 1;
PDBTitle: the second ca2+-binding domain of the na+-ca2+ exchanger is2 essential for regulation: crystal structures and3 mutational analysis
33d4ubpb_



not modelled 61.6 14 Fold:beta-clip
Superfamily:Urease, beta-subunit
Family:Urease, beta-subunit
34d1ejxb_



not modelled 60.9 10 Fold:beta-clip
Superfamily:Urease, beta-subunit
Family:Urease, beta-subunit
35d2dpka1



not modelled 57.5 8 Fold:Immunoglobulin-like beta-sandwich
Superfamily:CalX-like
Family:CalX-beta domain
36c2x41A_



not modelled 56.5 9 PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucosidase;
PDBTitle: structure of beta-glucosidase 3b from thermotoga neapolitana2 in complex with glucose
37d2fwua1



not modelled 55.7 8 Fold:Immunoglobulin-like beta-sandwich
Superfamily:CalX-like
Family:CalX-beta domain
38d1e9ya1



not modelled 55.5 18 Fold:beta-clip
Superfamily:Urease, beta-subunit
Family:Urease, beta-subunit
39d1e42a1



not modelled 55.4 22 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Clathrin adaptor appendage domain
Family:Alpha-adaptin ear subdomain-like
40c3h6aB_



not modelled 52.6 8 PDB header:cell adhesion
Chain: B: PDB Molecule:integrin beta-4;
PDBTitle: structure of the calx-beta domain of integrin beta42 crystallized in the presence of calcium
41c1e9zA_



not modelled 42.8 18 PDB header:hydrolase
Chain: A: PDB Molecule:urease subunit alpha;
PDBTitle: crystal structure of helicobacter pylori urease
42c3o0lB_



not modelled 42.6 14 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a pfam duf1425 family member (shew_1734) from2 shewanella sp. pv-4 at 1.81 a resolution
43c1yycA_



not modelled 41.4 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative late embryogenesis abundant protein;
PDBTitle: solution structure of a putative late embryogenesis2 abundant (lea) protein at2g46140.1
44c3eujB_



not modelled 40.1 33 PDB header:cell cycle
Chain: B: PDB Molecule:chromosome partition protein mukf;
PDBTitle: crystal structure of muke-mukf(residues 292-443)-mukb(head2 domain)-atpgammas complex, symmetric dimer
45c3qgaD_



not modelled 38.2 15 PDB header:hydrolase
Chain: D: PDB Molecule:fusion of urease beta and gamma subunits;
PDBTitle: 3.0 a model of iron containing urease urea2b2 from helicobacter2 mustelae
46c3butA_



not modelled 32.3 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein af_0446;
PDBTitle: crystal structure of protein af_0446 from archaeoglobus fulgidus
47d1k3ra1



not modelled 31.0 18 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Hypothetical protein MTH1 (MT0001), insert domain
48c3jt0B_



not modelled 29.7 11 PDB header:structural protein
Chain: B: PDB Molecule:lamin-b1;
PDBTitle: crystal structure of the c-terminal fragment (426-558)2 lamin-b1 from homo sapiens, northeast structural genomics3 consortium target hr5546a
49d1xo8a_



not modelled 29.3 13 Fold:Immunoglobulin-like beta-sandwich
Superfamily:LEA14-like
Family:LEA14-like
50c3rb7E_



not modelled 26.1 9 PDB header:metal binding protein
Chain: E: PDB Molecule:na/ca exchange protein;
PDBTitle: crystal structure of cbd12 from calx1.2
51c1e42A_



not modelled 22.5 21 PDB header:endocytosis
Chain: A: PDB Molecule:ap-2 complex subunit beta;
PDBTitle: beta2-adaptin appendage domain, from clathrin adaptor ap2
52d1jz8a2



not modelled 21.1 23 Fold:Immunoglobulin-like beta-sandwich
Superfamily:beta-Galactosidase/glucuronidase domain
Family:beta-Galactosidase/glucuronidase domain
53d2f7fa1



not modelled 20.8 16 Fold:TIM beta/alpha-barrel
Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like
Family:NadC C-terminal domain-like
54c3rfrI_



not modelled 19.4 19 PDB header:oxidoreductase
Chain: I: PDB Molecule:pmob;
PDBTitle: crystal structure of particulate methane monooxygenase (pmmo) from2 methylocystis sp. strain m
55c2f7fA_



not modelled 18.4 15 PDB header:transferase
Chain: A: PDB Molecule:nicotinate phosphoribosyltransferase, putative;
PDBTitle: crystal structure of enterococcus faecalis putative nicotinate2 phosphoribosyltransferase, new york structural genomics consortium
56d1r7aa1



not modelled 18.3 20 Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
57d1kyaa2



not modelled 17.4 9 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
58d1w8oa1



not modelled 16.9 11 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
59d1ufga_



not modelled 16.6 12 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Lamin A/C globular tail domain
Family:Lamin A/C globular tail domain
60c3e9uA_



not modelled 16.1 11 PDB header:membrane protein
Chain: A: PDB Molecule:na/ca exchange protein;
PDBTitle: crystal structure of calx cbd2 domain
61c1pzdA_



not modelled 15.7 10 PDB header:endocytosis/exocytosis
Chain: A: PDB Molecule:coatomer gamma subunit;
PDBTitle: structural identification of a conserved appendage domain2 in the carboxyl-terminus of the copi gamma-subunit.
62d1aoza2



not modelled 13.6 21 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
63c2vzvB_



not modelled 13.6 15 PDB header:hydrolase
Chain: B: PDB Molecule:exo-beta-d-glucosaminidase;
PDBTitle: substrate complex of amycolatopsis orientalis exo-2 chitosanase csxa e541a with chitosan
64c3k6sB_



not modelled 13.1 11 PDB header:cell adhesion
Chain: B: PDB Molecule:integrin beta-2;
PDBTitle: structure of integrin alphaxbeta2 ectodomain
65d1hfua2



not modelled 12.4 14 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
66d1pkoa_



not modelled 11.3 13 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
67d1v7wa1



not modelled 11.1 12 Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Glycosyltransferase family 36 C-terminal domain
68c1l9mB_



not modelled 10.4 10 PDB header:transferase
Chain: B: PDB Molecule:protein-glutamine glutamyltransferase e3;
PDBTitle: three-dimensional structure of the human transglutaminase 32 enzyme: binding of calcium ions change structure for3 activation
69c1r4xA_



not modelled 9.9 12 PDB header:protein transport
Chain: A: PDB Molecule:coatomer gamma subunit;
PDBTitle: crystal structure analys of the gamma-copi appendage domain
70d1ifra_



not modelled 9.5 12 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Lamin A/C globular tail domain
Family:Lamin A/C globular tail domain
71c3e9tD_



not modelled 9.3 10 PDB header:membrane protein
Chain: D: PDB Molecule:na/ca exchange protein;
PDBTitle: crystal structure of apo-form calx cbd1 domain
72c1wkwB_



not modelled 9.2 63 PDB header:translation/protein binding
Chain: B: PDB Molecule:eukaryotic translation initiation factor 4e
PDBTitle: crystal structure of the ternary complex of eif4e-m7gpppa-2 4ebp1 peptide
73c2lllA_



not modelled 9.2 11 PDB header:structural protein
Chain: A: PDB Molecule:lamin-b2;
PDBTitle: solution nmr structure of c-terminal globular domain of human lamin-2 b2, northeast structural genomics consortium target hr8546a
74c2zooA_



not modelled 8.4 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:probable nitrite reductase;
PDBTitle: crystal structure of nitrite reductase from pseudoalteromonas2 haloplanktis tac125
75d1ivta_



not modelled 8.0 15 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Lamin A/C globular tail domain
Family:Lamin A/C globular tail domain
76c2l02B_



not modelled 8.0 12 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of protein bt2368 from bacteroides2 thetaiotaomicron, northeast structural genomics consortium target3 btr375
77d1gyca2



not modelled 7.7 9 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
78d1hmja_



not modelled 6.8 13 Fold:RPB5-like RNA polymerase subunit
Superfamily:RPB5-like RNA polymerase subunit
Family:RPB5
79c3pdgA_



not modelled 6.8 21 PDB header:unknown function
Chain: A: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
80c2pheC_



not modelled 6.6 50 PDB header:transcription
Chain: C: PDB Molecule:alpha trans-inducing protein;
PDBTitle: model for vp16 binding to pc4
81c1u8cB_



not modelled 6.5 11 PDB header:cell adhesion
Chain: B: PDB Molecule:integrin beta-3;
PDBTitle: a novel adaptation of the integrin psi domain revealed from its2 crystal structure
82c2qziA_



not modelled 6.5 25 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: the crystal structure of a conserved protein of unknown function from2 streptococcus thermophilus lmg 18311.
83c2phgB_



not modelled 6.4 50 PDB header:transcription
Chain: B: PDB Molecule:alpha trans-inducing protein;
PDBTitle: model for vp16 binding to tfiib
84d2plta_



not modelled 6.4 11 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
85d1eu3a1



not modelled 5.7 20 Fold:OB-fold
Superfamily:Bacterial enterotoxins
Family:Superantigen toxins, N-terminal domain
86c3nuhB_



not modelled 5.7 40 PDB header:isomerase
Chain: B: PDB Molecule:dna gyrase subunit b;
PDBTitle: a domain insertion in e. coli gyrb adopts a novel fold that plays a2 critical role in gyrase function
87c2z4dA_



not modelled 5.6 21 PDB header:nuclear protein
Chain: A: PDB Molecule:26s proteasome regulatory subunit rpn13;
PDBTitle: nmr structures of yeast proteasome component rpn13
88d1v8ha1



not modelled 5.5 9 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:SoxZ-like

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0