Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	C	E	G	Y	V	E	K	P	L	Y	L	L	I	A	E	W	M	M	A	E	N	R	W	V	I	A	R	E	I	S	I	H	F	D	I	E	H	S	K	A	V	N	T	L	T	Y	I	L	S	E	V	T	E	I	S	C	E	V	K
Secondary structure
SS confidence
Disorder		?	?	?	?	?																			?	?	?																							?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		M	I	P	N	K	L	E	G	R	G	C	Q	C	Q	R	L	V	K	V	V	D	I	D	E	Q	I	Y	A	R	L	R	N	N	S	R	E	K	L	V	G	V	R	K	T	P	R	I	P	A	V	P	L	T	E	L	N	R	E	Q	K
Secondary structure
SS confidence
Disorder					?					?		?																						?	?	?	?	?	?	?	?	?	?	?	?	?		?					?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.
Sequence		W	Q	M	M	L	S	K	S	M	R	R
Secondary structure
SS confidence
Disorder										?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1j5y chain A Region: 14 - 90 Aligned: 74 Modelled: 77 Confidence: 75.2% Identity: 19% PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, biotin repressor family; PDBTitle: crystal structure of transcriptional regulator (tm1602) from2 thermotoga maritima at 2.3 a resolution Phyre2 PDB 1bia chain A domain 1 Region: 19 - 48 Aligned: 30 Modelled: 30 Confidence: 58.8% Identity: 3% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Biotin repressor-like Phyre2 PDB 2vqc chain A Region: 19 - 46 Aligned: 28 Modelled: 28 Confidence: 51.1% Identity: 18% PDB header:dna-binding protein Chain: A: PDB Molecule:hypothetical 13.2 kda protein; PDBTitle: structure of a dna binding winged-helix protein, f-112,2 from sulfolobus spindle-shaped virus 1. Phyre2 PDB 2vqc chain A domain 1 Region: 19 - 46 Aligned: 28 Modelled: 28 Confidence: 51.1% Identity: 18% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: F112-like Phyre2 PDB 2ve8 chain A domain 1 Region: 6 - 45 Aligned: 39 Modelled: 40 Confidence: 46.8% Identity: 15% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: FtsK C-terminal domain-like Phyre2 PDB 2ev0 chain A domain 1 Region: 11 - 46 Aligned: 36 Modelled: 36 Confidence: 45.0% Identity: 11% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Iron-dependent repressor protein Phyre2 PDB 1ku3 chain A Region: 12 - 46 Aligned: 35 Modelled: 35 Confidence: 44.1% Identity: 11% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Sigma3 and sigma4 domains of RNA polymerase sigma factors Family: Sigma4 domain Phyre2 PDB 1tty chain A Region: 12 - 54 Aligned: 43 Modelled: 43 Confidence: 42.5% Identity: 9% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Sigma3 and sigma4 domains of RNA polymerase sigma factors Family: Sigma4 domain Phyre2 PDB 1ku7 chain A Region: 12 - 51 Aligned: 40 Modelled: 40 Confidence: 40.9% Identity: 13% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Sigma3 and sigma4 domains of RNA polymerase sigma factors Family: Sigma4 domain Phyre2 PDB 3h0d chain B Region: 25 - 46 Aligned: 22 Modelled: 22 Confidence: 39.9% Identity: 18% PDB header:transcription/dna Chain: B: PDB Molecule:ctsr; PDBTitle: crystal structure of ctsr in complex with a 26bp dna duplex Phyre2 PDB 1j5y chain A domain 1 Region: 11 - 48 Aligned: 38 Modelled: 38 Confidence: 34.5% Identity: 11% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Biotin repressor-like Phyre2 PDB 2p7v chain B domain 1 Region: 11 - 54 Aligned: 44 Modelled: 44 Confidence: 31.9% Identity: 14% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Sigma3 and sigma4 domains of RNA polymerase sigma factors Family: Sigma4 domain Phyre2 PDB 2x4h chain A Region: 11 - 46 Aligned: 36 Modelled: 36 Confidence: 29.8% Identity: 17% PDB header:transcription Chain: A: PDB Molecule:hypothetical protein sso2273; PDBTitle: crystal structure of the hypothetical protein sso2273 from2 sulfolobus solfataricus Phyre2 PDB 1f5t chain A Region: 11 - 46 Aligned: 36 Modelled: 36 Confidence: 28.6% Identity: 14% PDB header:transcription/dna Chain: A: PDB Molecule:diphtheria toxin repressor; PDBTitle: diphtheria tox repressor (c102d mutant) complexed with2 nickel and dtxr consensus binding sequence Phyre2 PDB 2h09 chain A Region: 11 - 46 Aligned: 36 Modelled: 36 Confidence: 26.8% Identity: 8% PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator mntr; PDBTitle: crystal structure of diphtheria toxin repressor like protein2 from e. coli Phyre2 PDB 2j5p chain A domain 1 Region: 6 - 48 Aligned: 42 Modelled: 43 Confidence: 26.3% Identity: 12% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: FtsK C-terminal domain-like Phyre2 PDB 3by6 chain C Region: 6 - 45 Aligned: 40 Modelled: 40 Confidence: 26.0% Identity: 28% PDB header:transcription regulator Chain: C: PDB Molecule:predicted transcriptional regulator; PDBTitle: crystal structure of a transcriptional regulator from oenococcus oeni Phyre2 PDB 2d1h chain A domain 1 Region: 5 - 50 Aligned: 46 Modelled: 0 Confidence: 25.3% Identity: 11% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: TrmB-like Phyre2 PDB 1g3w chain A domain 1 Region: 11 - 46 Aligned: 36 Modelled: 36 Confidence: 24.9% Identity: 14% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Iron-dependent repressor protein Phyre2 PDB 3t72 chain O Region: 12 - 46 Aligned: 35 Modelled: 35 Confidence: 24.6% Identity: 14% PDB header:transcription/dna Chain: O: PDB Molecule:pho box dna (strand 1); PDBTitle: phob(e)-sigma70(4)-(rnap-betha-flap-tip-helix)-dna transcription2 activation sub-complex Phyre2 1 c1j5yA_ 2 d1biaa1 3 c2vqcA_ 4 d2vqca1 5 d2ve8a1 6 d2ev0a1 7 d1ku3a_ 8 d1ttya_ 9 d1ku7a_ 10 c3h0dB_ 11 d1j5ya1 12 d2p7vb1 13 c2x4hA_ 14 c1f5tA_ 15 c2h09A_ 16 d2j5pa1 17 c3by6C_ 18 d2d1ha1 19 d1g3wa1 20 c3t72o_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1j5yA_ 75.2 19 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, biotin repressor family; PDBTitle: crystal structure of transcriptional regulator (tm1602) from2 thermotoga maritima at 2.3 a resolution 2 d1biaa1 58.8 3 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Biotin repressor-like 3 c2vqcA_ 51.1 18 PDB header:dna-binding protein Chain: A: PDB Molecule:hypothetical 13.2 kda protein; PDBTitle: structure of a dna binding winged-helix protein, f-112,2 from sulfolobus spindle-shaped virus 1. 4 d2vqca1 51.1 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:F112-like 5 d2ve8a1 46.8 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:FtsK C-terminal domain-like 6 d2ev0a1 45.0 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Iron-dependent repressor protein 7 d1ku3a_ 44.1 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 8 d1ttya_ 42.5 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 9 d1ku7a_ 40.9 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 10 c3h0dB_ 39.9 18 PDB header:transcription/dna Chain: B: PDB Molecule:ctsr; PDBTitle: crystal structure of ctsr in complex with a 26bp dna duplex 11 d1j5ya1 34.5 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Biotin repressor-like 12 d2p7vb1 31.9 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 13 c2x4hA_ 29.8 17 PDB header:transcription Chain: A: PDB Molecule:hypothetical protein sso2273; PDBTitle: crystal structure of the hypothetical protein sso2273 from2 sulfolobus solfataricus 14 c1f5tA_ 28.6 14 PDB header:transcription/dna Chain: A: PDB Molecule:diphtheria toxin repressor; PDBTitle: diphtheria tox repressor (c102d mutant) complexed with2 nickel and dtxr consensus binding sequence 15 c2h09A_ 26.8 8 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator mntr; PDBTitle: crystal structure of diphtheria toxin repressor like protein2 from e. coli 16 d2j5pa1 26.3 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:FtsK C-terminal domain-like 17 c3by6C_ 26.0 28 PDB header:transcription regulator Chain: C: PDB Molecule:predicted transcriptional regulator; PDBTitle: crystal structure of a transcriptional regulator from oenococcus oeni 18 d2d1ha1 25.3 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:TrmB-like 19 d1g3wa1 24.9 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Iron-dependent repressor protein 20 c3t72o_ 24.6 14 PDB header:transcription/dna Chain: O: PDB Molecule:pho box dna (strand 1); PDBTitle: phob(e)-sigma70(4)-(rnap-betha-flap-tip-helix)-dna transcription2 activation sub-complex 21 d2fqma1 not modelled 24.0 33 Fold:Phosphoprotein oligomerization domain-like Superfamily:Phosphoprotein oligomerization domain-like Family:Phosphoprotein oligomerization domain-like 22 c2ev5B_ not modelled 22.0 11 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator mntr; PDBTitle: bacillus subtilis manganese transport regulator (mntr)2 bound to calcium 23 c2xuvB_ not modelled 21.2 25 PDB header:unknown function Chain: B: PDB Molecule:hdeb; PDBTitle: the structure of hdeb 24 d6paxa1 not modelled 20.3 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Paired domain 25 d1z6ra1 not modelled 20.2 8 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ROK associated domain 26 d1z05a1 not modelled 20.0 3 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ROK associated domain 27 c2jpcA_ not modelled 19.5 10 PDB header:dna binding protein Chain: A: PDB Molecule:ssrb; PDBTitle: ssrb dna binding protein 28 c3eetA_ not modelled 18.9 22 PDB header:transcription regulator Chain: A: PDB Molecule:putative gntr-family transcriptional regulator; PDBTitle: crystal structure of putative gntr-family transcriptional2 regulator 29 c1l9uH_ not modelled 18.7 11 PDB header:transcription Chain: H: PDB Molecule:sigma factor siga; PDBTitle: thermus aquaticus rna polymerase holoenzyme at 4 a2 resolution 30 c2it0A_ not modelled 18.7 17 PDB header:transcription/dna Chain: A: PDB Molecule:iron-dependent repressor ider; PDBTitle: crystal structure of a two-domain ider-dna complex crystal2 form ii 31 d2hr3a1 not modelled 18.7 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 32 c1z6rC_ not modelled 18.6 8 PDB header:transcription Chain: C: PDB Molecule:mlc protein; PDBTitle: crystal structure of mlc from escherichia coli 33 c3su8X_ not modelled 18.4 42 PDB header:apoptosis/signaling protein Chain: X: PDB Molecule:plexin-b1; PDBTitle: crystal structure of a truncated intracellular domain of plexin-b1 in2 complex with rac1 34 d2isya1 not modelled 17.2 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Iron-dependent repressor protein 35 d1fi3a_ not modelled 16.5 17 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 36 d1k78a1 not modelled 16.5 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Paired domain 37 c1r71B_ not modelled 16.1 8 PDB header:transcription/dna Chain: B: PDB Molecule:transcriptional repressor protein korb; PDBTitle: crystal structure of the dna binding domain of korb in2 complex with the operator dna 38 c3hm6X_ not modelled 15.9 42 PDB header:signaling protein Chain: X: PDB Molecule:plexin-b1; PDBTitle: crystal structure of the cytoplasmic domain of human plexin b1 39 c3boqB_ not modelled 15.8 13 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, marr family; PDBTitle: crystal structure of marr family transcriptional regulator from2 silicibacter pomeroyi 40 d1r71a_ not modelled 15.4 8 Fold:DNA/RNA-binding 3-helical bundle Superfamily:KorB DNA-binding domain-like Family:KorB DNA-binding domain-like 41 d1r1ta_ not modelled 15.4 7 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ArsR-like transcriptional regulators 42 d1u2wa1 not modelled 15.1 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ArsR-like transcriptional regulators 43 c2oqgA_ not modelled 14.5 7 PDB header:transcription Chain: A: PDB Molecule:possible transcriptional regulator, arsr family protein; PDBTitle: arsr-like transcriptional regulator from rhodococcus sp. rha1 44 d1ynra1 not modelled 14.2 22 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 45 d1r1ua_ not modelled 14.0 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ArsR-like transcriptional regulators 46 c1r22B_ not modelled 13.8 6 PDB header:transcription repressor Chain: B: PDB Molecule:transcriptional repressor smtb; PDBTitle: crystal structure of the cyanobacterial metallothionein2 repressor smtb (c14s/c61s/c121s mutant) in the zn2alpha5-3 form 47 c3o27B_ not modelled 13.5 27 PDB header:dna binding protein Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: the crystal structure of c68 from the hybrid virus-plasmid pssvx 48 c3ig3A_ not modelled 13.4 33 PDB header:signaling protein, membrane protein Chain: A: PDB Molecule:plxna3 protein; PDBTitle: crystal strucure of mouse plexin a3 intracellular domain 49 c3e0jF_ not modelled 13.0 22 PDB header:transferase Chain: F: PDB Molecule:dna polymerase subunit delta-3; PDBTitle: x-ray structure of the complex of regulatory subunits of2 human dna polymerase delta 50 d1sfxa_ not modelled 12.9 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:TrmB-like 51 c3f6oB_ not modelled 12.9 10 PDB header:transcription regulator Chain: B: PDB Molecule:probable transcriptional regulator, arsr family PDBTitle: crystal structure of arsr family transcriptional regulator,2 rha00566 52 d1ag7a_ not modelled 12.7 71 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:omega toxin-like Family:Conotoxin 53 d1ub9a_ not modelled 12.0 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 54 d1p4xa2 not modelled 11.7 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 55 c3kp3B_ not modelled 11.6 7 PDB header:transcription regulator/antibiotic Chain: B: PDB Molecule:transcriptional regulator tcar; PDBTitle: staphylococcus epidermidis in complex with ampicillin 56 d3ctaa1 not modelled 10.6 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 57 d1cora_ not modelled 10.4 22 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 58 d351ca_ not modelled 10.3 17 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 59 d1vz0a1 not modelled 9.6 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:KorB DNA-binding domain-like Family:KorB DNA-binding domain-like 60 c3lwfD_ not modelled 9.6 11 PDB header:transcription regulator Chain: D: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator (np_470886.1)2 from listeria innocua at 2.06 a resolution 61 d1ulya_ not modelled 8.9 6 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Hypothetical protein PH1932 62 d2gmga1 not modelled 8.8 7 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PF0610-like 63 c1g3wA_ not modelled 8.4 12 PDB header:gene regulation Chain: A: PDB Molecule:diphtheria toxin repressor; PDBTitle: cd-cys102ser dtxr 64 d1lvaa3 not modelled 8.3 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal fragment of elongation factor SelB 65 c3r0aB_ not modelled 8.3 10 PDB header:transcription regulator Chain: B: PDB Molecule:putative transcriptional regulator; PDBTitle: possible transcriptional regulator from methanosarcina mazei go1 (gi2 21227196) 66 c3cecA_ not modelled 8.2 0 PDB header:transcription Chain: A: PDB Molecule:putative antidote protein of plasmid maintenance system; PDBTitle: crystal structure of a putative antidote protein of plasmid2 maintenance system (npun_f2943) from nostoc punctiforme pcc 73102 at3 1.60 a resolution 67 c3s2wB_ not modelled 8.0 7 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, marr family; PDBTitle: the crystal structure of a marr transcriptional regulator from2 methanosarcina mazei go1 68 c1fx7C_ not modelled 7.9 15 PDB header:signaling protein Chain: C: PDB Molecule:iron-dependent repressor ider; PDBTitle: crystal structure of the iron-dependent regulator (ider)2 from mycobacterium tuberculosis 69 c3k69A_ not modelled 7.8 17 PDB header:transcription Chain: A: PDB Molecule:putative transcription regulator; PDBTitle: crystal structure of a putative transcriptional regulator (lp_0360)2 from lactobacillus plantarum at 1.95 a resolution 70 c3neuA_ not modelled 7.6 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin1836 protein; PDBTitle: the crystal structure of a functionally-unknown protein lin1836 from2 listeria innocua clip11262 71 c3t76A_ not modelled 7.5 14 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator vanug; PDBTitle: crystal structure of transcriptional regulator vanug, form ii 72 d1hlva1 not modelled 7.4 30 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Centromere-binding 73 c3ctaA_ not modelled 7.3 16 PDB header:transferase Chain: A: PDB Molecule:riboflavin kinase; PDBTitle: crystal structure of riboflavin kinase from thermoplasma2 acidophilum 74 c3i71B_ not modelled 7.0 33 PDB header:unknown function Chain: B: PDB Molecule:ethanolamine utilization protein eutk; PDBTitle: ethanolamine utilization microcompartment shell subunit, eutk c-2 terminal domain 75 c3ff5B_ not modelled 7.0 20 PDB header:protein transport Chain: B: PDB Molecule:peroxisomal biogenesis factor 14; PDBTitle: crystal structure of the conserved n-terminal domain of the2 peroxisomal matrix-protein-import receptor, pex14p 76 c3cuoB_ not modelled 6.9 14 PDB header:transcription regulator Chain: B: PDB Molecule:uncharacterized hth-type transcriptional regulator ygav; PDBTitle: crystal structure of the predicted dna-binding transcriptional2 regulator from e. coli 77 c2jscB_ not modelled 6.9 12 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator rv1994c/mt2050; PDBTitle: nmr structure of the cadmium metal-sensor cmtr from mycobacterium2 tuberculosis 78 d2dt5a1 not modelled 6.9 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Transcriptional repressor Rex, N-terminal domain 79 c2kpjA_ not modelled 6.7 7 PDB header:transcription regulator Chain: A: PDB Molecule:sos-response transcriptional repressor, lexa; PDBTitle: solution structure of protein sos-response transcriptional2 repressor, lexa from eubacterium rectale. northeast3 structural genomics consortium target err9a 80 c2hoeA_ not modelled 6.7 9 PDB header:transferase Chain: A: PDB Molecule:n-acetylglucosamine kinase; PDBTitle: crystal structure of n-acetylglucosamine kinase (tm1224) from2 thermotoga maritima at 2.46 a resolution 81 d1xd7a_ not modelled 6.7 3 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Transcriptional regulator Rrf2 82 c1aqsA_ not modelled 6.6 60 PDB header:metallothionein Chain: A: PDB Molecule:cu-metallothionein; PDBTitle: cu-metallothionein from saccharomyces cerevisiae, nmr, 102 structures 83 c3mlfC_ not modelled 6.6 12 PDB header:transcription regulator Chain: C: PDB Molecule:transcriptional regulator; PDBTitle: putative transcriptional regulator from staphylococcus aureus. 84 d1ylfa1 not modelled 6.4 3 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Transcriptional regulator Rrf2 85 d1dvva_ not modelled 6.4 22 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 86 c3iydF_ not modelled 6.4 15 PDB header:transcription/dna Chain: F: PDB Molecule:rna polymerase sigma factor rpod; PDBTitle: three-dimensional em structure of an intact activator-dependent2 transcription initiation complex 87 d1jhfa1 not modelled 6.3 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:LexA repressor, N-terminal DNA-binding domain 88 d1vola2 not modelled 6.2 14 Fold:Cyclin-like Superfamily:Cyclin-like Family:Transcription factor IIB (TFIIB), core domain 89 c3cu4A_ not modelled 6.2 17 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c family protein; PDBTitle: omcf, outer membrance cytochrome f from geobacter2 sulfurreducens 90 d1fasa_ not modelled 6.2 38 Fold:Snake toxin-like Superfamily:Snake toxin-like Family:Snake venom toxins 91 d1mkma1 not modelled 6.1 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Transcriptional regulator IclR, N-terminal domain 92 c2l4dA_ not modelled 6.1 11 PDB header:electron transport Chain: A: PDB Molecule:sco1/senc family protein/cytochrome c; PDBTitle: cytochrome c domain of pp3183 protein from pseudomonas putida 93 d1l3la1 not modelled 6.0 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:GerE-like (LuxR/UhpA family of transcriptional regulators) 94 c3jthA_ not modelled 6.0 12 PDB header:transcription Chain: A: PDB Molecule:transcription activator hlyu; PDBTitle: crystal structure of a transcriptional regulator hlyu from2 vibrio vulnificus cmcp6 95 d1y7ya1 not modelled 5.8 4 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 96 c3f6vA_ not modelled 5.8 13 PDB header:transcription regulator Chain: A: PDB Molecule:possible transcriptional regulator, arsr family PDBTitle: crystal structure of possible transcriptional regulator for2 arsenical resistance 97 c2fxaB_ not modelled 5.8 19 PDB header:transcription Chain: B: PDB Molecule:protease production regulatory protein hpr; PDBTitle: structure of the protease production regulatory protein hpr from2 bacillus subtilis. 98 c3dmiA_ not modelled 5.8 18 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c6; PDBTitle: crystallization and structural analysis of cytochrome c62 from the diatom phaeodactylum tricornutum at 1.5 a3 resolution 99 d1lnwa_ not modelled 5.7 6 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0