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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c1l9uH_

Fold library idPDB HeaderMoleculeTitle
c1l9uH_PDB header: transcriptionChain: H: PDB Molecule: sigma factor siga;PDBTitle: thermus aquaticus rna polymerase holoenzyme at 4 a2 resolution


Added to library: Tue Mar 16 13:27:51 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARVEEVDGK
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Known secondary structure (DSSP)

STTS



TTTTTTTTTT
TTTTTSS

TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence LKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRR
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Known secondary structure (DSSP) S

TT
STTGGGSSSSSTTTTSTTSSSS
TTS

SSST
 .........150.........160.........170.........180.........190.........200.........210
Sequence FKFSTYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAK
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Known secondary structure (DSSP) T
SSTSSSSS


SSS


S
SS

 .........220.........230.........240.........250.........260.........270.........280
Sequence RVEETLKIAQEPVSLETPIDFIPDENLPSPVEAAAQSLLSEELEKALSKLSEREAMVLKLRKGLIDGREH
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Known secondary structure (DSSP) TT
SS
S

S
SSS





TT
TTTTSS
TTTTTTSSTTSS


 .........290.........300.........310.........320..
Sequence TLEEVGAYFGVTRERIRQIENKALRKLKYHESRTRKLRDFLE
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Known secondary structure (DSSP)
TTS
S
S

GGGTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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