Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	T	S	D	D	I	H	N	T	T	A	T	G	K	C	P	F	H	Q	G	G	H	D	Q	S	A	G	A	G	T	T	T	R	D	W	W	P	N	Q	L	R	V	D	L	L	N	Q	H	S	N	R	S	N	P	L	G	E	D	F
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?		?					?		?	?	?	?		?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	Y	R	K	E	F	S	K	L	D	Y	Y	G	L	K	K	D	L	K	A	L	L	T	E	S	Q	P	W	W	P	A	D	W	G	S	Y	A	G	L	F	I	R	M	A	W	H	G	A	G	T	Y	R	S	I	D	G	R	G	G	A
Secondary structure
SS confidence
Disorder																													?	?			?																							?		?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	R	G	Q	Q	R	F	A	P	L	N	S	W	P	D	N	V	S	L	D	K	A	R	R	L	L	W	P	I	K	Q	K	Y	G	Q	K	I	S	W	A	D	L	F	I	L	A	G	N	V	A	L	E	N	S	G	F	R	T	F	G
Secondary structure
SS confidence
Disorder			?	?	?	?		?		?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		F	G	A	G	R	E	D	V	W	E	P	D	L	D	V	N	W	G	D	E	K	A	W	L	T	H	R	H	P	E	A	L	A	K	A	P	L	G	A	T	E	M	G	L	I	Y	V	N	P	E	G	P	D	H	S	G	E	P	L	S
Secondary structure
SS confidence
Disorder												?	?	?	?	?	?	?	?	?	?		?		?	?	?	?		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?		?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		A	A	A	A	I	R	A	T	F	G	N	M	G	M	N	D	E	E	T	V	A	L	I	A	G	G	H	T	L	G	K	T	H	G	A	G	P	T	S	N	V	G	P	D	P	E	A	A	P	I	E	E	Q	G	L	G	W	A	S	T
Secondary structure
SS confidence
Disorder		?																																					?		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		Y	G	S	G	V	G	A	D	A	I	T	S	G	L	E	V	V	W	T	Q	T	P	T	Q	W	S	N	Y	F	F	E	N	L	F	K	Y	E	W	V	Q	T	R	S	P	A	G	A	I	Q	F	E	A	V	D	A	P	E	I	I	P
Secondary structure
SS confidence
Disorder		?	?	?		?	?	?			?	?				?	?	?		?																	?	?	?	?	?	?	?		?	?	?	?						?	?	?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		D	P	F	D	P	S	K	K	R	K	P	T	M	L	V	T	D	L	T	L	R	F	D	P	E	F	E	K	I	S	R	R	F	L	N	D	P	Q	A	F	N	E	A	F	A	R	A	W	F	K	L	T	H	R	D	M	G	P	K	S
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?																																												?			?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		R	Y	I	G	P	E	V	P	K	E	D	L	I	W	Q	D	P	L	P	Q	P	I	Y	N	P	T	E	Q	D	I	I	D	L	K	F	A	I	A	D	S	G	L	S	V	S	E	L	V	S	V	A	W	A	S	A	S	T	F	R	G
Secondary structure
SS confidence
Disorder				?										?	?	?				?	?	?																		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Sequence		G	D	K	R	G	G	A	N	G	A	R	L	A	L	M	P	Q	R	D	W	D	V	N	A	A	A	V	R	A	L	P	V	L	E	K	I	Q	K	E	S	G	K	A	S	L	A	D	I	I	V	L	A	G	V	V	G	V	E	K	A
Secondary structure
SS confidence
Disorder		?	?			?		?							?			?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600
Sequence		A	S	A	A	G	L	S	I	H	V	P	F	A	P	G	R	V	D	A	R	Q	D	Q	T	D	I	E	M	F	E	L	L	E	P	I	A	D	G	F	R	N	Y	R	A	R	L	D	V	S	T	T	E	S	L	L	I	D	K	A	Q
Secondary structure
SS confidence
Disorder																							?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?		?		?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660
Sequence		Q	L	T	L	T	A	P	E	M	T	A	L	V	G	G	M	R	V	L	G	A	N	F	D	G	S	K	N	G	V	F	T	D	R	V	G	V	L	S	N	D	F	F	V	N	L	L	D	M	R	Y	E	W	K	A	T	D	E	S	K
Secondary structure
SS confidence
Disorder																																		?																				?					?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720
Sequence		E	L	F	E	G	R	D	R	E	T	G	E	V	K	F	T	A	S	R	A	D	L	V	F	G	S	N	S	V	L	R	A	V	A	E	V	Y	A	S	S	D	A	H	E	K	F	V	K	D	F	V	A	A	W	V	K	V	M	N	L
Secondary structure
SS confidence
Disorder						?	?	?	?	?	?	?	?	?																													?																		?
Disorder confidence
		.	.	.	.	.	.
Sequence		D	R	F	D	L	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1itk chain B Region: 30 - 725 Aligned: 696 Modelled: 696 Confidence: 100.0% Identity: 55% PDB header:oxidoreductase Chain: B: PDB Molecule:catalase-peroxidase; PDBTitle: crystal structure of catalase-peroxidase from haloarcula2 marismortui Phyre2 PDB 2b2q chain B Region: 30 - 725 Aligned: 695 Modelled: 696 Confidence: 100.0% Identity: 66% PDB header:oxidoreductase Chain: B: PDB Molecule:catalase-peroxidase; PDBTitle: crystal structure of native catalase-peroxidase katg at2 ph7.5 Phyre2 PDB 2fxh chain B Region: 30 - 725 Aligned: 695 Modelled: 696 Confidence: 100.0% Identity: 66% PDB header:oxidoreductase Chain: B: PDB Molecule:catalase-peroxidase protein; PDBTitle: crystal structure of katg at ph 6.5 Phyre2 PDB 2cca chain A Region: 15 - 725 Aligned: 698 Modelled: 701 Confidence: 100.0% Identity: 59% PDB header:oxidoreductase Chain: A: PDB Molecule:peroxidase/catalase t; PDBTitle: crystal structure of the catalase-peroxidase (katg) and2 s315t mutant from mycobacterium tuberculosis Phyre2 PDB 1ub2 chain A Region: 32 - 725 Aligned: 687 Modelled: 694 Confidence: 100.0% Identity: 58% PDB header:oxidoreductase Chain: A: PDB Molecule:catalase-peroxidase; PDBTitle: crystal structure of catalase-peroxidase from synechococcus pcc 7942 Phyre2 PDB 2cca chain A domain 1 Region: 15 - 431 Aligned: 406 Modelled: 407 Confidence: 100.0% Identity: 59% Fold: Heme-dependent peroxidases Superfamily: Heme-dependent peroxidases Family: Catalase-peroxidase KatG Phyre2 PDB 1mwv chain A domain 1 Region: 30 - 428 Aligned: 398 Modelled: 399 Confidence: 100.0% Identity: 70% Fold: Heme-dependent peroxidases Superfamily: Heme-dependent peroxidases Family: Catalase-peroxidase KatG Phyre2 PDB 1ub2 chain A domain 1 Region: 32 - 428 Aligned: 396 Modelled: 397 Confidence: 100.0% Identity: 58% Fold: Heme-dependent peroxidases Superfamily: Heme-dependent peroxidases Family: Catalase-peroxidase KatG Phyre2 PDB 1itk chain A domain 1 Region: 30 - 428 Aligned: 392 Modelled: 399 Confidence: 100.0% Identity: 56% Fold: Heme-dependent peroxidases Superfamily: Heme-dependent peroxidases Family: Catalase-peroxidase KatG Phyre2 PDB 1mwv chain A domain 2 Region: 429 - 725 Aligned: 297 Modelled: 297 Confidence: 100.0% Identity: 61% Fold: Heme-dependent peroxidases Superfamily: Heme-dependent peroxidases Family: Catalase-peroxidase KatG Phyre2 PDB 1ub2 chain A domain 2 Region: 429 - 725 Aligned: 291 Modelled: 297 Confidence: 100.0% Identity: 59% Fold: Heme-dependent peroxidases Superfamily: Heme-dependent peroxidases Family: Catalase-peroxidase KatG Phyre2 PDB 1itk chain A domain 2 Region: 429 - 725 Aligned: 296 Modelled: 297 Confidence: 100.0% Identity: 53% Fold: Heme-dependent peroxidases Superfamily: Heme-dependent peroxidases Family: Catalase-peroxidase KatG Phyre2 PDB 1u2j chain C Region: 432 - 726 Aligned: 279 Modelled: 278 Confidence: 100.0% Identity: 91% PDB header:oxidoreductase Chain: C: PDB Molecule:peroxidase/catalase hpi; PDBTitle: crystal structure of the c-terminal domain from the2 catalase-peroxidase katg of escherichia coli (p21 21 21) Phyre2 PDB 1u2k chain A Region: 435 - 726 Aligned: 276 Modelled: 275 Confidence: 100.0% Identity: 91% Fold: Heme-dependent peroxidases Superfamily: Heme-dependent peroxidases Family: Catalase-peroxidase KatG Phyre2 PDB 2cca chain A domain 2 Region: 432 - 706 Aligned: 274 Modelled: 275 Confidence: 100.0% Identity: 55% Fold: Heme-dependent peroxidases Superfamily: Heme-dependent peroxidases Family: Catalase-peroxidase KatG Phyre2 PDB 2eut chain A domain 1 Region: 436 - 721 Aligned: 258 Modelled: 271 Confidence: 100.0% Identity: 22% Fold: Heme-dependent peroxidases Superfamily: Heme-dependent peroxidases Family: CCP-like Phyre2 PDB 3q3u chain A Region: 443 - 725 Aligned: 251 Modelled: 266 Confidence: 100.0% Identity: 18% PDB header:oxidoreductase Chain: A: PDB Molecule:lignin peroxidase; PDBTitle: trametes cervina lignin peroxidase Phyre2 PDB 1b80 chain A Region: 443 - 725 Aligned: 252 Modelled: 266 Confidence: 100.0% Identity: 17% Fold: Heme-dependent peroxidases Superfamily: Heme-dependent peroxidases Family: CCP-like Phyre2 PDB 1qpa chain A Region: 443 - 725 Aligned: 252 Modelled: 261 Confidence: 100.0% Identity: 19% Fold: Heme-dependent peroxidases Superfamily: Heme-dependent peroxidases Family: CCP-like Phyre2 PDB 1iyn chain A Region: 64 - 419 Aligned: 263 Modelled: 278 Confidence: 100.0% Identity: 34% Fold: Heme-dependent peroxidases Superfamily: Heme-dependent peroxidases Family: CCP-like Phyre2 1 c1itkB_ 2 c2b2qB_ 3 c2fxhB_ 4 c2ccaA_ 5 c1ub2A_ 6 d2ccaa1 7 d1mwva1 8 d1ub2a1 9 d1itka1 10 d1mwva2 11 d1ub2a2 12 d1itka2 13 c1u2jC_ 14 d1u2ka_ 15 d2ccaa2 16 d2euta1 17 c3q3uA_ 18 d1b80a_ 19 d1qpaa_ 20 d1iyna_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99