Email l.a.kelley@imperial.ac.uk Description P45956 Date Thu Jan 5 12:03:53 GMT 2012 Unique Job ID 486625614bbe4c63

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3oq2A_ 71.3 14 PDB header:immune system Chain: A: PDB Molecule:crispr-associated protein cas2; PDBTitle: structure of a crispr associated protein cas2 from desulfovibrio2 vulgaris 2 d1zpwx1 56.3 17 Fold:Ferredoxin-like Superfamily:TTP0101/SSO1404-like Family:TTP0101/SSO1404-like 3 d2i0xa1 44.4 24 Fold:Ferredoxin-like Superfamily:TTP0101/SSO1404-like Family:TTP0101/SSO1404-like 4 d2ivya1 39.2 16 Fold:Ferredoxin-like Superfamily:TTP0101/SSO1404-like Family:TTP0101/SSO1404-like 5 c1yz4A_ 34.1 20 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity phosphatase-like 15 isoform a; PDBTitle: crystal structure of dusp15 6 c2p4dA_ 29.1 26 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity protein phosphatase; PDBTitle: structure-assisted discovery of variola major h12 phosphatase inhibitors 7 d1m3ga_ 22.5 12 Fold:(Phosphotyrosine protein) phosphatases II Superfamily:(Phosphotyrosine protein) phosphatases II Family:Dual specificity phosphatase-like 8 c2e5jA_ 22.4 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:methenyltetrahydrofolate synthetase domain PDBTitle: solution structure of rna binding domain in2 methenyltetrahydrofolate synthetase domain containing 9 c1zzwA_ 21.6 13 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity protein phosphatase 10; PDBTitle: crystal structure of catalytic domain of human map kinase2 phosphatase 5 10 d1h4vb1 20.8 13 Fold:Anticodon-binding domain-like Superfamily:Class II aaRS ABD-related Family:Anticodon-binding domain of Class II aaRS 11 d1wf0a_ 20.5 23 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 12 d1x52a1 20.4 10 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:ERF1/Dom34 C-terminal domain-like 13 c3cwvB_ 20.0 20 PDB header:isomerase Chain: B: PDB Molecule:dna gyrase, b subunit, truncated; PDBTitle: crystal structure of b-subunit of the dna gyrase from myxococcus2 xanthus 14 c2dgyA_ 19.8 19 PDB header:translation Chain: A: PDB Molecule:mgc11102 protein; PDBTitle: solution structure of the eukaryotic initiation factor 1a2 in mgc11102 protein 15 d1f20a2 19.5 8 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:NADPH-cytochrome p450 reductase-like 16 c2r0bA_ 19.0 13 PDB header:hydrolase Chain: A: PDB Molecule:serine/threonine/tyrosine-interacting protein; PDBTitle: crystal structure of human tyrosine phosphatase-like2 serine/threonine/tyrosine-interacting protein 17 c2oqkA_ 16.3 14 PDB header:translation Chain: A: PDB Molecule:putative translation initiation factor eif-1a; PDBTitle: crystal structure of putative cryptosporidium parvum translation2 initiation factor eif-1a 18 c3lnuA_ 15.7 30 PDB header:isomerase Chain: A: PDB Molecule:topoisomerase iv subunit b; PDBTitle: crystal structure of pare subunit 19 c1no8A_ 15.7 13 PDB header:rna binding protein Chain: A: PDB Molecule:aly; PDBTitle: solution structure of the nuclear factor aly rbd domain 20 d1no8a_ 15.7 13 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 21 c2osrA_ not modelled 14.7 9 PDB header:rna binding protein Chain: A: PDB Molecule:nucleolar protein 3; PDBTitle: nmr structure of rrm-2 of yeast npl3 protein 22 c2esbA_ not modelled 14.6 20 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity protein phosphatase 18; PDBTitle: crystal structure of human dusp18 23 c3d0jA_ not modelled 14.3 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ca_c3497; PDBTitle: crystal structure of conserved protein of unknown function ca_c34972 from clostridium acetobutylicum atcc 824 24 c2e0tA_ not modelled 14.3 35 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity phosphatase 26; PDBTitle: crystal structure of catalytic domain of dual specificity phosphatase2 26, ms0830 from homo sapiens 25 c3pgwP_ not modelled 14.3 14 PDB header:splicing/dna/rna Chain: P: PDB Molecule:u1-a; PDBTitle: crystal structure of human u1 snrnp 26 c2wgpA_ not modelled 14.2 8 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity protein phosphatase 14; PDBTitle: crystal structure of human dual specificity phosphatase 14 27 c2y96A_ not modelled 13.4 36 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity phosphatase dupd1; PDBTitle: structure of human dual-specificity phosphatase 27 28 c2oudA_ not modelled 13.2 14 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity protein phosphatase 10; PDBTitle: crystal structure of the catalytic domain of human mkp5 29 c2hcmA_ not modelled 13.2 17 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity protein phosphatase; PDBTitle: crystal structure of mouse putative dual specificity phosphatase2 complexed with zinc tungstate, new york structural genomics3 consortium 30 c1wrmA_ not modelled 12.9 20 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity phosphatase 22; PDBTitle: crystal structure of jsp-1 31 c3ek1C_ not modelled 12.6 20 PDB header:oxidoreductase Chain: C: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of aldehyde dehydrogenase from brucella2 melitensis biovar abortus 2308 32 d1jl0a_ not modelled 12.4 12 Fold:S-adenosylmethionine decarboxylase Superfamily:S-adenosylmethionine decarboxylase Family:S-adenosylmethionine decarboxylase 33 c3jz4C_ not modelled 11.8 25 PDB header:oxidoreductase Chain: C: PDB Molecule:succinate-semialdehyde dehydrogenase [nadp+]; PDBTitle: crystal structure of e. coli nadp dependent enzyme 34 d2f9da1 not modelled 10.9 18 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 35 d1pvga2 not modelled 10.6 24 Fold:ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Superfamily:ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Family:DNA gyrase/MutL, N-terminal domain 36 c1qzrA_ not modelled 10.1 24 PDB header:isomerase Chain: A: PDB Molecule:dna topoisomerase ii; PDBTitle: crystal structure of the atpase region of saccharomyces cerevisiae2 topoisomerase ii bound to icrf-187 (dexrazoxane) 37 d2vgna3 not modelled 10.1 15 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:ERF1/Dom34 C-terminal domain-like 38 c3emuA_ not modelled 10.0 14 PDB header:hydrolase Chain: A: PDB Molecule:leucine rich repeat and phosphatase domain PDBTitle: crystal structure of a leucine rich repeat and phosphatase2 domain containing protein from entamoeba histolytica 39 d1mkpa_ not modelled 9.9 21 Fold:(Phosphotyrosine protein) phosphatases II Superfamily:(Phosphotyrosine protein) phosphatases II Family:Dual specificity phosphatase-like 40 d2ghpa2 not modelled 9.8 13 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 41 d1vhra_ not modelled 9.6 38 Fold:(Phosphotyrosine protein) phosphatases II Superfamily:(Phosphotyrosine protein) phosphatases II Family:Dual specificity phosphatase-like 42 c1zxnB_ not modelled 9.4 24 PDB header:isomerase Chain: B: PDB Molecule:dna topoisomerase ii, alpha isozyme; PDBTitle: human dna topoisomerase iia atpase/adp 43 d1uawa_ not modelled 9.2 19 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 44 c2kkuA_ not modelled 9.0 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of protein af2351 from archaeoglobus2 fulgidus. northeast structural genomics consortium target3 att9/ontario center for structural proteomics target af2351 45 d1o04a_ not modelled 8.8 18 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 46 c3pgwS_ not modelled 8.7 12 PDB header:splicing/dna/rna Chain: S: PDB Molecule:u1-70k; PDBTitle: crystal structure of human u1 snrnp 47 c2g6zB_ not modelled 8.5 27 PDB header:hydrolase Chain: B: PDB Molecule:dual specificity protein phosphatase 5; PDBTitle: crystal structure of human dusp5 48 c1flcB_ not modelled 8.5 25 PDB header:hydrolase Chain: B: PDB Molecule:haemagglutinin-esterase-fusion glycoprotein; PDBTitle: x-ray structure of the haemagglutinin-esterase-fusion glycoprotein of2 influenza c virus 49 c2e44A_ not modelled 8.3 9 PDB header:rna binding protein Chain: A: PDB Molecule:insulin-like growth factor 2 mrna binding PDBTitle: solution structure of rna binding domain in insulin-like2 growth factor 2 mrna binding protein 3 50 d2cq3a1 not modelled 8.2 20 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 51 d1sqwa1 not modelled 8.0 14 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain 52 d1vpqa_ not modelled 8.0 19 Fold:TIM beta/alpha-barrel Superfamily:TM1631-like Family:TM1631-like 53 c2gwoC_ not modelled 7.9 33 PDB header:hydrolase Chain: C: PDB Molecule:dual specificity protein phosphatase 13; PDBTitle: crystal structure of tmdp 54 c3ifgH_ not modelled 7.6 21 PDB header:oxidoreductase Chain: H: PDB Molecule:succinate-semialdehyde dehydrogenase (nadp+); PDBTitle: crystal structure of succinate-semialdehyde dehydrogenase from2 burkholderia pseudomallei, part 1 of 2 55 d2cpja1 not modelled 7.6 23 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 56 c3lyrA_ not modelled 7.6 13 PDB header:transcription activator Chain: A: PDB Molecule:transcription factor coe1; PDBTitle: human early b-cell factor 1 (ebf1) dna-binding domain 57 c1s16B_ not modelled 7.4 26 PDB header:isomerase Chain: B: PDB Molecule:topoisomerase iv subunit b; PDBTitle: crystal structure of e. coli topoisomerase iv pare 43kda subunit2 complexed with adpnp 58 c2nt2C_ not modelled 7.3 18 PDB header:hydrolase Chain: C: PDB Molecule:protein phosphatase slingshot homolog 2; PDBTitle: crystal structure of slingshot phosphatase 2 59 c2vgmA_ not modelled 7.2 15 PDB header:cell cycle Chain: A: PDB Molecule:dom34; PDBTitle: structure of yeast dom34 : a protein related to translation2 termination factor erf1 and involved in no-go decay. 60 c3ed6B_ not modelled 6.9 16 PDB header:oxidoreductase Chain: B: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: 1.7 angstrom resolution crystal structure of betaine aldehyde2 dehydrogenase (betb) from staphylococcus aureus 61 c3b4wA_ not modelled 6.8 16 PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of mycobacterium tuberculosis aldehyde dehydrogenase2 complexed with nad+ 62 c3s01A_ not modelled 6.8 11 PDB header:rna binding protein Chain: A: PDB Molecule:heterogeneous nuclear ribonucleoprotein l; PDBTitle: crystal structure of a heterogeneous nuclear ribonucleoprotein l2 (hnrpl) from mus musculus at 2.15 a resolution 63 c3bs9A_ not modelled 6.8 19 PDB header:rna binding protein Chain: A: PDB Molecule:nucleolysin tia-1 isoform p40; PDBTitle: x-ray structure of human tia-1 rrm2 64 d1fjca_ not modelled 6.7 14 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 65 c2hvzA_ not modelled 6.7 23 PDB header:rna binding protein Chain: A: PDB Molecule:splicing factor, arginine/serine-rich 7; PDBTitle: solution structure of the rrm domain of sr rich factor 9g8 66 c3p6yD_ not modelled 6.7 7 PDB header:rna binding protein/rna Chain: D: PDB Molecule:cleavage and polyadenylation specificity factor subunit 6; PDBTitle: cf im25-cf im68-uguaa complex 67 d1y0na_ not modelled 6.6 14 Fold:YehU-like Superfamily:YehU-like Family:YehU-like 68 d1x4aa1 not modelled 6.5 19 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 69 d1fnxh1 not modelled 6.5 10 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 70 c2fhoB_ not modelled 6.4 17 PDB header:rna binding protein Chain: B: PDB Molecule:spliceosomal protein p14; PDBTitle: nmr solution structure of the human spliceosomal protein2 complex p14-sf3b155 71 c2i38A_ not modelled 6.3 23 PDB header:rna binding protein/chimera Chain: A: PDB Molecule:fusion protein consists of immunoglobin g- PDBTitle: solution structure of the rrm of srp20 72 c3mlpE_ not modelled 6.2 13 PDB header:transcription/dna Chain: E: PDB Molecule:transcription factor coe1; PDBTitle: early b-cell factor 1 (ebf1) bound to dna 73 c2zamA_ not modelled 6.1 21 PDB header:protein transport Chain: A: PDB Molecule:vacuolar protein sorting-associating protein 4b; PDBTitle: crystal structure of mouse skd1/vps4b apo-form 74 c3r31A_ not modelled 6.1 20 PDB header:oxidoreductase Chain: A: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: crystal structure of betaine aldehyde dehydrogenase from agrobacterium2 tumefaciens 75 c2e5gA_ not modelled 6.0 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:u6 snrna-specific terminal uridylyltransferase 1; PDBTitle: solution structure of rna binding domain in rna binding2 motif protein 21 76 d2ghpa3 not modelled 6.0 11 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 77 d2qwva1 not modelled 5.9 29 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:AF1056-like 78 c2krbA_ not modelled 5.8 15 PDB header:translation Chain: A: PDB Molecule:eukaryotic translation initiation factor 3 PDBTitle: solution structure of eif3b-rrm bound to eif3j peptide 79 d2cqia1 not modelled 5.8 17 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 80 c1ei1B_ not modelled 5.8 28 PDB header:isomerase Chain: B: PDB Molecule:dna gyrase b; PDBTitle: dimerization of e. coli dna gyrase b provides a structural mechanism2 for activating the atpase catalytic center 81 c2vroB_ not modelled 5.7 27 PDB header:oxidoreductase Chain: B: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of aldehyde dehydrogenase from2 burkholderia xenovorans lb400 82 c2dngA_ not modelled 5.7 20 PDB header:translation Chain: A: PDB Molecule:eukaryotic translation initiation factor 4h; PDBTitle: solution structure of rna binding domain in eukaryotic2 translation initiation factor 4h 83 c1t90B_ not modelled 5.6 20 PDB header:oxidoreductase Chain: B: PDB Molecule:probable methylmalonate-semialdehyde PDBTitle: crystal structure of methylmalonate semialdehyde2 dehydrogenase from bacillus subtilis 84 d1bxsa_ not modelled 5.6 19 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 85 c3ep3A_ not modelled 5.6 17 PDB header:lyase Chain: A: PDB Molecule:s-adenosylmethionine decarboxylase alpha chain; PDBTitle: human adometdc d174n mutant with no putrescine bound 86 c3mcaB_ not modelled 5.5 14 PDB header:translation regulation/hydrolase Chain: B: PDB Molecule:protein dom34; PDBTitle: structure of the dom34-hbs1 complex and implications for its role in2 no-go decay 87 d1fjeb2 not modelled 5.5 14 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 88 d1wi8a_ not modelled 5.5 12 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 89 d1a4sa_ not modelled 5.4 20 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 90 d1ynya1 not modelled 5.3 15 Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:Hydantoinase (dihydropyrimidinase) 91 d1o89a2 not modelled 5.3 19 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Alcohol dehydrogenase-like, C-terminal domain 92 d3dhwc1 not modelled 5.3 9 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 93 d1x0fa1 not modelled 5.2 28 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 94 c3cp0A_ not modelled 5.2 13 PDB header:membrane protein Chain: A: PDB Molecule:membrane protein implicated in regulation of membrane PDBTitle: crystal structure of the soluble domain of membrane protein implicated2 in regulation of membrane protease activity from corynebacterium3 glutamicum 95 d1ky8a_ not modelled 5.2 21 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 96 c2fc9A_ not modelled 5.2 14 PDB header:rna binding protein Chain: A: PDB Molecule:ncl protein; PDBTitle: solution structure of the rrm_1 domain of ncl protein 97 c2fc8A_ not modelled 5.1 18 PDB header:rna binding protein Chain: A: PDB Molecule:ncl protein; PDBTitle: solution structure of the rrm_1 domain of ncl protein