Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP16916
DateWed Jan 25 15:20:39 GMT 2012
Unique Job ID47ca9e2d682e1b9a

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2oy7A_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:outer surface protein a;
PDBTitle: the crystal structure of ospa mutant
Confidence and coverage
Confidence: 95.2% Coverage: 19%
256 residues ( 19% of your sequence) have been modelled with 95.2% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSGKPAARQGDMTQYGGSIVQGSAGVRIGAPTGVACSVCPGGVTSGHPVNPLLGAKVLPG
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Disorder  ????????????????????????????
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   .........70.........80.........90.........100.........110.........120
Sequence  ETDIALPGPLPFILSRTYSSYRTKTPAPVGSLGPGWKMPADIRLQLRDNTLILSDNGGRS
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   .........130.........140.........150.........160.........170.........180
Sequence  LYFEHLFPGEDGYSRSESLWLVRGGVAKLDEGHRLAALWQALPEELRLSPHRYLATNSPQ
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   .........190.........200.........210.........220.........230.........240
Sequence  GPWWLLGWCERVPEADEVLPAPLPPYRVLTGLVDRFGRTQTFHREAAGEFSGEITGVTDG
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   .........250.........260.........270.........280.........290.........300
Sequence  AWRHFRLVLTTQAQRAEEARQQAISGGTEPSAFPDTLPGYTEYGRDNGIRLSAVWLTHDP
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   .........310.........320.........330.........340.........350.........360
Sequence  EYPENLPAAPLVRYGWTPRGELAVVYDRSGKQVRSFTYDDKYRGRMVAHRHTGRPEIRYR
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   .........370.........380.........390.........400.........410.........420
Sequence  YDSDGRVTEQLNPAGLSYTYQYEKDRITITDSLDRREVLHTQGEAGLKRVVKKEHADGSV
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   .........430.........440.........450.........460.........470.........480
Sequence  TQSQFDAVGRLRAQTDAAGRTTEYSPDVVTGLITRITTPDGRASAFYYNHHNQLTSATGP
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   .........490.........500.........510.........520.........530.........540
Sequence  DGLELRREYDELGRLIQETAPDGDITRYRYDNPHSDLPCATEDATGSRKTMTWSRYGQLL
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   .........550.........560.........570.........580.........590.........600
Sequence  SFTDCSGYVTRYDHDRFGQMTAVHREEGLSQYRAYDSRGQLIAVKDTQGHETRYEYNIAG
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   .........610.........620.........630.........640.........650.........660
Sequence  DLTAVIAPDGSRNGTQYDAWGKAVRTTQGGLTRSMEYDAAGRVIRLTSENGSHTTFRYDV
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   .........670.........680.........690.........700.........710.........720
Sequence  LDRLIQETGFDGRTQRYHHDLTGKLIRSEDEGLVTHWHYDEADRLTHRTVKGETAERWQY
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   .........730.........740.........750.........760.........770.........780
Sequence  DERGWLTDISHISEGHRVAVHYRYDEKGRLTGERQTVHHPQTEALLWQHETRHAYNAQGL
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   .........790.........800.........810.........820.........830.........840
Sequence  ANRCIPDSLPAVEWLTYGSGYLAGMKLGDTPLVEYTRDRLHRETLRSFGRYELTTAYTPA
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   .........850.........860.........870.........880.........890.........900
Sequence  GQLQSQHLNSLLSDRDYTWNDNGELIRISSPRQTRSYSYSTTGRLTGVHTTAANLDIRIP
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   .........910.........920.........930.........940.........950.........960
Sequence  YATDPAGNRLPDPELHPDSTLSMWPDNRIARDAHYLYRYDRHGRLTEKTDLIPEGVIRTD
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   .........970.........980.........990.........1000.........1010.........1020
Sequence  DERTHRYHYDSQHRLVHYTRTQYEEPLVESRYLYDPLGRRVAKRVWRRERDLTGWMSLSR
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   .........1030.........1040.........1050.........1060.........1070.........1080
Sequence  KPQVTWYGWDGDRLTTIQNDRTRIQTIYQPGSFTPLIRVETATGELAKTQRRSLADALQQ
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   .........1090.........1100.........1110.........1120.........1130.........1140
Sequence  SGGEDGGSVVFPPVLVQMLDRLESEILADRVSEESRRWLASCGLTVEQMQNQMDPVYTPA
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   .........1150.........1160.........1170.........1180.........1190.........1200
Sequence  RKIHLYHCDHRGLPLALISKEGTTEWCAEYDEWGNLLNEENPHQLQQLIRLPGQQYDEES
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   .........1210.........1220.........1230.........1240.........1250.........1260
Sequence  GLYYNRHRYYDPLQGRYITQDPIGLKGGWNFYQYPLNPVTNTDPLGLEVFPRPFPLPIPW
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   .........1270.........1280.........1290.........1300.........1310.........1320
Sequence  PKSPAQQQADDNAAKALTKWWNDTASQRIFDSLILNNPGLALDITMIASRGNVADTGITD
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   .........1330.........1340.........1350.........1360.........1370.......
Sequence  RVNDIINDRFWSDGKKPDRCDVLQELIDCGDISAKDAKSTQKAWNCRHSRQSNDKKR
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2oy7 chain A

3D model

Region: 432 - 724
Aligned: 256
Modelled: 266
Confidence: 95.2%
Identity: 16%
PDB header:membrane protein
Chain: A: PDB Molecule:outer surface protein a;
PDBTitle: the crystal structure of ospa mutant

Phyre2

PDB 1x3z chain A domain 1

3D model

Region: 1209 - 1242
Aligned: 32
Modelled: 34
Confidence: 52.2%
Identity: 19%
Fold: Cysteine proteinases
Superfamily: Cysteine proteinases
Family: Transglutaminase core

Phyre2

PDB 1ulv chain A domain 3

3D model

Region: 1220 - 1303
Aligned: 77
Modelled: 84
Confidence: 45.0%
Identity: 19%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: CBD9-like
Family: Glucodextranase, domain C

Phyre2

PDB 1n7d chain A

3D model

Region: 470 - 647
Aligned: 178
Modelled: 178
Confidence: 44.1%
Identity: 11%
PDB header:lipid transport
Chain: A: PDB Molecule:low-density lipoprotein receptor;
PDBTitle: extracellular domain of the ldl receptor

Phyre2

PDB 3esw chain A

3D model

Region: 1209 - 1242
Aligned: 32
Modelled: 34
Confidence: 31.3%
Identity: 19%
PDB header:hydrolase
Chain: A: PDB Molecule:peptide-n(4)-(n-acetyl-beta-glucosaminyl)asparagine
PDBTitle: complex of yeast pngase with glcnac2-iac.

Phyre2

PDB 3msw chain A

3D model

Region: 926 - 975
Aligned: 34
Modelled: 34
Confidence: 30.2%
Identity: 21%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a protein with unknown function (bf3112) from2 bacteroides fragilis nctc 9343 at 1.90 a resolution

Phyre2

PDB 1oey chain A

3D model

Region: 1345 - 1371
Aligned: 27
Modelled: 27
Confidence: 29.6%
Identity: 15%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: CAD & PB1 domains
Family: PB1 domain

Phyre2

PDB 2f4m chain A domain 1

3D model

Region: 1209 - 1242
Aligned: 34
Modelled: 34
Confidence: 29.4%
Identity: 18%
Fold: Cysteine proteinases
Superfamily: Cysteine proteinases
Family: Transglutaminase core

Phyre2

PDB 2ivz chain D

3D model

Region: 385 - 626
Aligned: 238
Modelled: 242
Confidence: 26.0%
Identity: 11%
PDB header:protein transport/hydrolase
Chain: D: PDB Molecule:protein tolb;
PDBTitle: structure of tolb in complex with a peptide of the colicin2 e9 t-domain

Phyre2

PDB 3rwx chain A

3D model

Region: 62 - 75
Aligned: 14
Modelled: 14
Confidence: 24.5%
Identity: 21%
PDB header:transport protein
Chain: A: PDB Molecule:hypothetical bacterial outer membrane protein;
PDBTitle: crystal structure of a hypothetical bacterial outer membrane protein2 (bf2706) from bacteroides fragilis nctc 9343 at 2.40 a resolution

Phyre2

PDB 2w8b chain B

3D model

Region: 347 - 599
Aligned: 243
Modelled: 253
Confidence: 23.3%
Identity: 12%
PDB header:protein transport/membrane protein
Chain: B: PDB Molecule:protein tolb;
PDBTitle: crystal structure of processed tolb in complex with pal

Phyre2

PDB 1mje chain A

3D model

Region: 1220 - 1258
Aligned: 39
Modelled: 39
Confidence: 23.3%
Identity: 28%
PDB header:gene regulation/antitumor protein/dna
Chain: A: PDB Molecule:breast cancer 2;
PDBTitle: structure of a brca2-dss1-ssdna complex

Phyre2

PDB 1miu chain A

3D model

Region: 1214 - 1258
Aligned: 45
Modelled: 45
Confidence: 23.0%
Identity: 27%
PDB header:gene regulation/antitumor protein
Chain: A: PDB Molecule:breast cancer type 2 susceptibility protein;
PDBTitle: structure of a brca2-dss1 complex

Phyre2

PDB 1khd chain A domain 2

3D model

Region: 1332 - 1366
Aligned: 34
Modelled: 35
Confidence: 22.8%
Identity: 35%
Fold: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Superfamily: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Family: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain

Phyre2

PDB 2kij chain A

3D model

Region: 7 - 79
Aligned: 60
Modelled: 62
Confidence: 22.7%
Identity: 25%
PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting atpase 1;
PDBTitle: solution structure of the actuator domain of the copper-2 transporting atpase atp7a

Phyre2

PDB 2fz0 chain A

3D model

Region: 1318 - 1349
Aligned: 26
Modelled: 32
Confidence: 22.2%
Identity: 19%
PDB header:membrane protein
Chain: A: PDB Molecule:v-snare component of the vacuolar snare complex
PDBTitle: identification of yeast r-snare nyv1p as a novel longin2 domain protein

Phyre2

PDB 1j5q chain B

3D model

Region: 1189 - 1246
Aligned: 50
Modelled: 58
Confidence: 21.5%
Identity: 26%
PDB header:viral protein
Chain: B: PDB Molecule:major capsid protein;
PDBTitle: the structure and evolution of the major capsid protein of a large,2 lipid-containing, dna virus.

Phyre2

PDB 1qs0 chain B domain 1

3D model

Region: 1236 - 1266
Aligned: 31
Modelled: 31
Confidence: 18.8%
Identity: 32%
Fold: Thiamin diphosphate-binding fold (THDP-binding)
Superfamily: Thiamin diphosphate-binding fold (THDP-binding)
Family: Branched-chain alpha-keto acid dehydrogenase Pyr module

Phyre2

PDB 1o5u chain A

3D model

Region: 96 - 137
Aligned: 39
Modelled: 42
Confidence: 18.5%
Identity: 8%
Fold: Double-stranded beta-helix
Superfamily: RmlC-like cupins
Family: Hypothetical protein TM1112

Phyre2

PDB 1bcg chain A

3D model

Region: 2 - 18
Aligned: 17
Modelled: 17
Confidence: 16.2%
Identity: 35%
Fold: Knottins (small inhibitors, toxins, lectins)
Superfamily: Scorpion toxin-like
Family: Long-chain scorpion toxins

Phyre2
1

c2oy7A_
2

d1x3za1
3

d1ulva3
4

c1n7dA_
5

c3eswA_
6

c3mswA_
7

d1oeya_
8

d2f4ma1
9

c2ivzD_
10

c3rwxA_
11

c2w8bB_
12

c1mjeA_
13

c1miuA_
14

d1khda2
15

c2kijA_
16

c2fz0A_
17

c1j5qB_
18

d1qs0b1
19

d1o5ua_
20

d1bcga_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2oy7A_



95.2 16 PDB header:membrane protein
Chain: A: PDB Molecule:outer surface protein a;
PDBTitle: the crystal structure of ospa mutant
2d1x3za1



52.2 19 Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Transglutaminase core
3d1ulva3



45.0 19 Fold:Immunoglobulin-like beta-sandwich
Superfamily:CBD9-like
Family:Glucodextranase, domain C
4c1n7dA_



44.1 11 PDB header:lipid transport
Chain: A: PDB Molecule:low-density lipoprotein receptor;
PDBTitle: extracellular domain of the ldl receptor
5c3eswA_



31.3 19 PDB header:hydrolase
Chain: A: PDB Molecule:peptide-n(4)-(n-acetyl-beta-glucosaminyl)asparagine
PDBTitle: complex of yeast pngase with glcnac2-iac.
6c3mswA_



30.2 21 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a protein with unknown function (bf3112) from2 bacteroides fragilis nctc 9343 at 1.90 a resolution
7d1oeya_



29.6 15 Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:PB1 domain
8d2f4ma1



29.4 18 Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Transglutaminase core
9c2ivzD_



26.0 11 PDB header:protein transport/hydrolase
Chain: D: PDB Molecule:protein tolb;
PDBTitle: structure of tolb in complex with a peptide of the colicin2 e9 t-domain
10c3rwxA_



24.5 21 PDB header:transport protein
Chain: A: PDB Molecule:hypothetical bacterial outer membrane protein;
PDBTitle: crystal structure of a hypothetical bacterial outer membrane protein2 (bf2706) from bacteroides fragilis nctc 9343 at 2.40 a resolution
11c2w8bB_



23.3 12 PDB header:protein transport/membrane protein
Chain: B: PDB Molecule:protein tolb;
PDBTitle: crystal structure of processed tolb in complex with pal
12c1mjeA_



23.3 28 PDB header:gene regulation/antitumor protein/dna
Chain: A: PDB Molecule:breast cancer 2;
PDBTitle: structure of a brca2-dss1-ssdna complex
13c1miuA_



23.0 27 PDB header:gene regulation/antitumor protein
Chain: A: PDB Molecule:breast cancer type 2 susceptibility protein;
PDBTitle: structure of a brca2-dss1 complex
14d1khda2



22.8 35 Fold:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
15c2kijA_



22.7 25 PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting atpase 1;
PDBTitle: solution structure of the actuator domain of the copper-2 transporting atpase atp7a
16c2fz0A_



22.2 19 PDB header:membrane protein
Chain: A: PDB Molecule:v-snare component of the vacuolar snare complex
PDBTitle: identification of yeast r-snare nyv1p as a novel longin2 domain protein
17c1j5qB_



21.5 26 PDB header:viral protein
Chain: B: PDB Molecule:major capsid protein;
PDBTitle: the structure and evolution of the major capsid protein of a large,2 lipid-containing, dna virus.
18d1qs0b1



18.8 32 Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:Branched-chain alpha-keto acid dehydrogenase Pyr module
19d1o5ua_



18.5 8 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Hypothetical protein TM1112
20d1bcga_



16.2 35 Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Scorpion toxin-like
Family:Long-chain scorpion toxins
21c2hc8A_



not modelled 15.5 30 PDB header:transport protein
Chain: A: PDB Molecule:cation-transporting atpase, p-type;
PDBTitle: structure of the a. fulgidus copa a-domain
22c1iyjB_



not modelled 15.2 27 PDB header:gene regulation/antitumor protein
Chain: B: PDB Molecule:breast cancer susceptibility;
PDBTitle: structure of a brca2-dss1 complex
23c3e5zA_



not modelled 14.0 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative gluconolactonase;
PDBTitle: x-ray structure of the putative gluconolactonase in protein family2 pf08450. northeast structural genomics consortium target drr130.
24d1pk6c_



not modelled 14.0 27 Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
25d1ei5a1



not modelled 13.9 32 Fold:Streptavidin-like
Superfamily:D-aminopeptidase, middle and C-terminal domains
Family:D-aminopeptidase, middle and C-terminal domains
26c1dskA_



not modelled 13.6 100 PDB header:viral peptide
Chain: A: PDB Molecule:vpr protein;
PDBTitle: nmr solution structure of vpr59_86, 20 structures
27c2kz5A_



not modelled 13.5 18 PDB header:transcription
Chain: A: PDB Molecule:transcription factor nf-e2 45 kda subunit;
PDBTitle: solution nmr structure of transcription factor nf-e2 subunit's dna2 binding domain from homo sapiens, northeast structural genomics3 consortium target hr4653b
28d1miua3



not modelled 13.4 23 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
29c2x12A_



not modelled 13.2 23 PDB header:cell adhesion
Chain: A: PDB Molecule:fimbriae-associated protein fap1;
PDBTitle: ph-induced modulation of streptococcus parasanguinis2 adhesion by fap1 fimbriae
30d1bcoa1



not modelled 13.2 17 Fold:mu transposase, C-terminal domain
Superfamily:mu transposase, C-terminal domain
Family:mu transposase, C-terminal domain
31d1vk8a_



not modelled 13.1 14 Fold:Ferredoxin-like
Superfamily:MTH1187/YkoF-like
Family:MTH1187-like
32c2ka3C_



not modelled 13.0 36 PDB header:structural protein
Chain: C: PDB Molecule:emilin-1;
PDBTitle: structure of emilin-1 c1q-like domain
33d1pzqa_



not modelled 12.6 32 Fold:Dimerisation interlock
Superfamily:Docking domain A of the erythromycin polyketide synthase (DEBS)
Family:Docking domain A of the erythromycin polyketide synthase (DEBS)
34d1pk6b_



not modelled 12.5 27 Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
35d1iyjb3



not modelled 12.4 23 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
36c2cseU_



not modelled 12.2 19 PDB header:virus
Chain: U: PDB Molecule:guanylyltransferase;
PDBTitle: features of reovirus outer-capsid protein mu1 revealed by2 electron and image reconstruction of the virion at 7.0-a3 resolution
37d2joya1



not modelled 11.9 7 Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:Ribosomal protein L14e
38d1brwa3



not modelled 11.6 26 Fold:alpha/beta-Hammerhead
Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain
Family:Pyrimidine nucleoside phosphorylase C-terminal domain
39d1lxna_



not modelled 11.5 15 Fold:Ferredoxin-like
Superfamily:MTH1187/YkoF-like
Family:MTH1187-like
40c3bmxB_



not modelled 11.5 25 PDB header:hydrolase
Chain: B: PDB Molecule:uncharacterized lipoprotein ybbd;
PDBTitle: beta-n-hexosaminidase (ybbd) from bacillus subtilis
41d1c3ha_



not modelled 11.3 31 Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
42c3dczA_



not modelled 11.2 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative rnfg subunit of electron transport complex;
PDBTitle: crystal structure of a putative rnfg subunit of electron transport2 complex (tm0246) from thermotoga maritima at 1.65 a resolution
43d1m3ya2



not modelled 11.0 33 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Group II dsDNA viruses VP
Family:Major capsid protein vp54
44d1uerc2



not modelled 10.9 20 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
45c1zrxA_



not modelled 10.9 23 PDB header:antimicrobial protein, antibiotic
Chain: A: PDB Molecule:stomoxyn;
PDBTitle: solution structure of stomoxyn in h20/tfe 50%
46c3fnkA_



not modelled 10.9 23 PDB header:structural protein
Chain: A: PDB Molecule:cellulosomal scaffoldin adaptor protein b;
PDBTitle: crystal structure of the second type ii cohesin module from2 the cellulosomal adaptor scaa scaffoldin of acetivibrio3 cellulolyticus
47d2tpta3



not modelled 10.7 26 Fold:alpha/beta-Hammerhead
Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain
Family:Pyrimidine nucleoside phosphorylase C-terminal domain
48c3izcN_



not modelled 10.6 21 PDB header:ribosome
Chain: N: PDB Molecule:60s ribosomal protein rpl14 (l14e);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
49c2jpnA_



not modelled 10.5 26 PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent dna helicase uvsw;
PDBTitle: solution structure of t4 bacteriophage helicase uvsw.1
50c3h1sB_



not modelled 10.2 15 PDB header:oxidoreductase
Chain: B: PDB Molecule:superoxide dismutase;
PDBTitle: crystal structure of superoxide dismutase from francisella tularensis2 subsp. tularensis schu s4
51c3iz5N_



not modelled 10.2 13 PDB header:ribosome
Chain: N: PDB Molecule:60s ribosomal protein l14 (l14e);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
52c1m4xC_



not modelled 10.0 33 PDB header:virus
Chain: C: PDB Molecule:pbcv-1 virus capsid;
PDBTitle: pbcv-1 virus capsid, quasi-atomic model
53c1trlB_



not modelled 10.0 19 PDB header:hydrolase (metalloprotease)
Chain: B: PDB Molecule:thermolysin fragment 255 - 316;
PDBTitle: nmr solution structure of the c-terminal fragment 255-3162 of thermolysin: a dimer formed by subunits having the3 native structure
54d2pyta1



not modelled 10.0 15 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:EutQ-like
55c2oajA_



not modelled 10.0 12 PDB header:endocytosis/exocytosis
Chain: A: PDB Molecule:protein sni1;
PDBTitle: crystal structure of sro7 from s. cerevisiae
56c2jttD_



not modelled 9.9 36 PDB header:calcium binding protein/antitumor protei
Chain: D: PDB Molecule:calcyclin-binding protein;
PDBTitle: solution structure of calcium loaded s100a6 bound to c-2 terminal siah-1 interacting protein
57d1lxja_



not modelled 9.5 12 Fold:Ferredoxin-like
Superfamily:MTH1187/YkoF-like
Family:MTH1187-like
58c3lk6A_



not modelled 9.3 25 PDB header:hydrolase
Chain: A: PDB Molecule:lipoprotein ybbd;
PDBTitle: beta-n-hexosaminidase n318d mutant (ybbd_n318d) from bacillus subtilis
59c3jroA_



not modelled 9.1 13 PDB header:transport protein, structural protein
Chain: A: PDB Molecule:fusion protein of protein transport protein sec13
PDBTitle: nup84-nup145c-sec13 edge element of the npc lattice
60c2gacA_



not modelled 9.1 13 PDB header:hydrolase
Chain: A: PDB Molecule:glycosylasparaginase;
PDBTitle: t152c mutant glycosylasparaginase from flavobacterium2 meningosepticum
61d1sknp_



not modelled 9.0 11 Fold:A DNA-binding domain in eukaryotic transcription factors
Superfamily:A DNA-binding domain in eukaryotic transcription factors
Family:A DNA-binding domain in eukaryotic transcription factors
62d1ejxc1



not modelled 9.0 26 Fold:Composite domain of metallo-dependent hydrolases
Superfamily:Composite domain of metallo-dependent hydrolases
Family:alpha-Subunit of urease
63d1dfma_



not modelled 8.9 47 Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Restriction endonuclease BglII
64c2jtmA_



not modelled 8.9 29 PDB header:dna binding protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: solution structure of sso6901 from sulfolobus solfataricus2 p2
65d1jnpa_



not modelled 8.7 24 Fold:Oncogene products
Superfamily:Oncogene products
Family:Oncogene products
66d1a1xa_



not modelled 8.7 19 Fold:Oncogene products
Superfamily:Oncogene products
Family:Oncogene products
67c3nv4A_



not modelled 8.7 28 PDB header:sugar binding protein
Chain: A: PDB Molecule:galectin 9 short isoform variant;
PDBTitle: crystal structure of human galectin-9 c-terminal crd in complex with2 sialyllactose
68c2ksnA_



not modelled 8.6 18 PDB header:signaling protein
Chain: A: PDB Molecule:ubiquitin domain-containing protein 2;
PDBTitle: solution structure of the n-terminal domain of dc-ubp/ubtd2
69d1pk6a_



not modelled 8.6 22 Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
70c1bdeA_



not modelled 8.4 27 PDB header:aids
Chain: A: PDB Molecule:vpr protein;
PDBTitle: helical structure of polypeptides from the c-terminal half2 of hiv-1 vpr, nmr, 20 structures
71c3nqhA_



not modelled 8.4 15 PDB header:hydrolase
Chain: A: PDB Molecule:glycosyl hydrolase;
PDBTitle: crystal structure of a glycosyl hydrolase (bt_2959) from bacteroides2 thetaiotaomicron vpi-5482 at 2.11 a resolution
72d2f1fa1



not modelled 8.3 16 Fold:Ferredoxin-like
Superfamily:ACT-like
Family:IlvH-like
73d1f00i2



not modelled 8.3 33 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Invasin/intimin cell-adhesion fragments
Family:Invasin/intimin cell-adhesion fragments
74d1xata_



not modelled 8.3 21 Fold:Single-stranded left-handed beta-helix
Superfamily:Trimeric LpxA-like enzymes
Family:Galactoside acetyltransferase-like
75c2vtwF_



not modelled 8.2 32 PDB header:viral protein
Chain: F: PDB Molecule:fiber protein 2;
PDBTitle: structure of the c-terminal head domain of the fowl2 adenovirus type 1 short fibre
76c1gv3B_



not modelled 8.2 11 PDB header:manganese superoxide dismutase
Chain: B: PDB Molecule:manganese superoxide dismutase;
PDBTitle: the 2.0 angstrom resolution structure of the catalytic2 portion of a cyanobacterial membrane-bound manganese3 superoxide dismutase
77c1dfwA_



not modelled 8.2 57 PDB header:immune system
Chain: A: PDB Molecule:lung surfactant protein b;
PDBTitle: conformational mapping of the n-terminal segment of2 surfactant protein b in lipid using 13c-enhanced fourier3 transform infrared spectroscopy (ftir)
78d1x6va1



not modelled 8.2 19 Fold:PUA domain-like
Superfamily:PUA domain-like
Family:ATP sulfurylase N-terminal domain
79d2pc6a2



not modelled 8.1 16 Fold:Ferredoxin-like
Superfamily:ACT-like
Family:IlvH-like
80c2wlgA_



not modelled 7.9 26 PDB header:transferase
Chain: A: PDB Molecule:polysialic acid o-acetyltransferase;
PDBTitle: crystallographic analysis of the polysialic acid o-2 acetyltransferase oatwy
81d1e9yb1



not modelled 7.9 26 Fold:Composite domain of metallo-dependent hydrolases
Superfamily:Composite domain of metallo-dependent hydrolases
Family:alpha-Subunit of urease
82d1o91a_



not modelled 7.9 31 Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
83c1o91B_



not modelled 7.9 31 PDB header:collagen
Chain: B: PDB Molecule:collagen alpha 1(viii) chain;
PDBTitle: crystal structure of a collagen viii nc1 domain trimer
84c2iu9C_



not modelled 7.8 23 PDB header:transferase
Chain: C: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine
PDBTitle: chlamydia trachomatis lpxd with 100mm udpglcnac (complex ii)
85d2q09a1



not modelled 7.8 80 Fold:Composite domain of metallo-dependent hydrolases
Superfamily:Composite domain of metallo-dependent hydrolases
Family:Imidazolonepropionase-like
86d2jdqd1



not modelled 7.7 20 Fold:PB2 C-terminal domain-like
Superfamily:PB2 C-terminal domain-like
Family:PB2 C-terminal domain-like
87d2i5ua1



not modelled 7.7 17 Fold:DnaD domain-like
Superfamily:DnaD domain-like
Family:DnaD domain
88d1w9pa2



not modelled 7.6 18 Fold:FKBP-like
Superfamily:Chitinase insertion domain
Family:Chitinase insertion domain
89d1jsga_



not modelled 7.5 24 Fold:Oncogene products
Superfamily:Oncogene products
Family:Oncogene products
90d2hqya2



not modelled 7.5 19 Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:FemXAB nonribosomal peptidyltransferases
91d1azpa_



not modelled 7.5 17 Fold:SH3-like barrel
Superfamily:Chromo domain-like
Family:"Histone-like" proteins from archaea
92c2a03A_



not modelled 7.5 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:fe-superoxide dismutase homolog;
PDBTitle: superoxide dismutase protein from plasmodium berghei
93c3cl5A_



not modelled 7.4 20 PDB header:hydrolase
Chain: A: PDB Molecule:hemagglutinin-esterase;
PDBTitle: structure of coronavirus hemagglutinin-esterase in complex with 4,9-o-2 diacetyl sialic acid
94d1r7aa1



not modelled 7.4 36 Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
95d1thqa_



not modelled 7.4 50 Fold:Transmembrane beta-barrels
Superfamily:OMPA-like
Family:Outer membrane enzyme PagP
96d1zaka2



not modelled 7.4 33 Fold:Rubredoxin-like
Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain
Family:Microbial and mitochondrial ADK, insert "zinc finger" domain
97c2kjmA_



not modelled 7.4 16 PDB header:rna binding protein
Chain: A: PDB Molecule:histone rna hairpin-binding protein;
PDBTitle: solution structure of slbp rna binding domain fragment
98c1t3dB_



not modelled 7.3 30 PDB header:transferase
Chain: B: PDB Molecule:serine acetyltransferase;
PDBTitle: crystal structure of serine acetyltransferase from e.coli at 2.2a
99d1s6la1



not modelled 7.3 44 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MerB N-terminal domain-like

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0