Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	Q	N	A	G	S	L	V	V	L	G	S	I	N	A	D	H	I	L	N	L	Q	S	F	P	T	P	G	E	T	V	T	G	N	H	Y	Q	V	A	F	G	G	K	G	A	N	Q	A	V	A	A	G	R	S	G	A	N	I	A	F
Secondary structure
SS confidence
Disorder		?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		I	A	C	T	G	D	D	S	I	G	E	S	V	R	Q	Q	L	A	T	D	N	I	D	I	T	P	V	S	V	I	K	G	E	S	T	G	V	A	L	I	F	V	N	G	E	G	E	N	V	I	G	I	H	A	G	A	N	A	A	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		S	P	A	L	V	E	A	Q	R	E	R	I	A	N	A	S	A	L	L	M	Q	L	E	S	P	L	E	S	V	M	A	A	A	K	I	A	H	Q	N	K	T	I	V	A	L	N	P	A	P	A	R	E	L	P	D	E	L	L	A	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		V	D	I	I	T	P	N	E	T	E	A	E	K	L	T	G	I	R	V	E	N	D	E	D	A	A	K	A	A	Q	V	L	H	E	K	G	I	R	T	V	L	I	T	L	G	S	R	G	V	W	A	S	V	N	G	E	G	Q	R	V
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		P	G	F	R	V	Q	A	V	D	T	I	A	A	G	D	T	F	N	G	A	L	I	T	A	L	L	E	E	K	P	L	P	E	A	I	R	F	A	H	A	A	A	A	I	A	V	T	R	K	G	A	Q	P	S	V	P	W	R	E	E
Secondary structure
SS confidence
Disorder																																																		?
Disorder confidence
		.	.	.	.	.	.	.	.	.
Sequence		I	D	A	F	L	D	R	Q	R
Secondary structure
SS confidence
Disorder								?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1rkd chain A Region: 4 - 309 Aligned: 306 Modelled: 306 Confidence: 100.0% Identity: 100% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 3kzh chain A Region: 2 - 309 Aligned: 307 Modelled: 308 Confidence: 100.0% Identity: 22% PDB header:transferase Chain: A: PDB Molecule:probable sugar kinase; PDBTitle: crystal structure of a putative sugar kinase from2 clostridium perfringens Phyre2 PDB 2fv7 chain A domain 1 Region: 1 - 305 Aligned: 302 Modelled: 305 Confidence: 100.0% Identity: 36% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 3go6 chain B Region: 4 - 308 Aligned: 280 Modelled: 280 Confidence: 100.0% Identity: 37% PDB header:transferase Chain: B: PDB Molecule:ribokinase rbsk; PDBTitle: crystal structure of m. tuberculosis ribokinase (rv2436) in2 complex with ribose and amp-pnp Phyre2 PDB 1vm7 chain A Region: 6 - 307 Aligned: 294 Modelled: 302 Confidence: 100.0% Identity: 39% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 2rbc chain A Region: 4 - 309 Aligned: 300 Modelled: 306 Confidence: 100.0% Identity: 22% PDB header:transferase Chain: A: PDB Molecule:sugar kinase; PDBTitle: crystal structure of a putative ribokinase from agrobacterium2 tumefaciens Phyre2 PDB 2c49 chain A Region: 1 - 309 Aligned: 293 Modelled: 309 Confidence: 100.0% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:sugar kinase mj0406; PDBTitle: crystal structure of methanocaldococcus jannaschii2 nucleoside kinase - an archaeal member of the ribokinase3 family Phyre2 PDB 3pl2 chain D Region: 4 - 305 Aligned: 293 Modelled: 297 Confidence: 100.0% Identity: 25% PDB header:transferase Chain: D: PDB Molecule:sugar kinase, ribokinase family; PDBTitle: crystal structure of a 5-keto-2-deoxygluconokinase (ncgl0155, cgl0158)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.89 a3 resolution Phyre2 PDB 2nwh chain A Region: 1 - 309 Aligned: 297 Modelled: 301 Confidence: 100.0% Identity: 26% PDB header:signaling protein,transferase Chain: A: PDB Molecule:carbohydrate kinase; PDBTitle: carbohydrate kinase from agrobacterium tumefaciens Phyre2 PDB 3i3y chain B Region: 6 - 306 Aligned: 279 Modelled: 283 Confidence: 100.0% Identity: 31% PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase; PDBTitle: crystal structure of ribokinase in complex with d-ribose from2 klebsiella pneumoniae Phyre2 PDB 2pkk chain A Region: 2 - 308 Aligned: 296 Modelled: 306 Confidence: 100.0% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of m tuberculosis adenosine kinase complexed with 2-2 fluro adenosine Phyre2 PDB 3iq0 chain B Region: 1 - 308 Aligned: 294 Modelled: 307 Confidence: 100.0% Identity: 26% PDB header:transferase Chain: B: PDB Molecule:putative ribokinase ii; PDBTitle: crystal structure of a putative ribokinase ii in complex2 with atp and mg+2 from e.coli Phyre2 PDB 3in1 chain A Region: 6 - 309 Aligned: 297 Modelled: 304 Confidence: 100.0% Identity: 27% PDB header:transferase Chain: A: PDB Molecule:uncharacterized sugar kinase ydjh; PDBTitle: crystal structure of a putative ribokinase in complex with2 adp from e.coli Phyre2 PDB 3cqd chain B Region: 1 - 307 Aligned: 300 Modelled: 307 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: B: PDB Molecule:6-phosphofructokinase isozyme 2; PDBTitle: structure of the tetrameric inhibited form of2 phosphofructokinase-2 from escherichia coli Phyre2 PDB 3b1q chain D Region: 6 - 308 Aligned: 288 Modelled: 295 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: D: PDB Molecule:ribokinase, putative; PDBTitle: structure of burkholderia thailandensis nucleoside kinase (bthnk) in2 complex with inosine Phyre2 PDB 1v19 chain A Region: 1 - 305 Aligned: 286 Modelled: 302 Confidence: 100.0% Identity: 26% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 2qcv chain A Region: 1 - 309 Aligned: 298 Modelled: 307 Confidence: 100.0% Identity: 23% PDB header:transferase Chain: A: PDB Molecule:putative 5-dehydro-2-deoxygluconokinase; PDBTitle: crystal structure of a putative 5-dehydro-2-deoxygluconokinase (iolc)2 from bacillus halodurans c-125 at 1.90 a resolution Phyre2 PDB 2abq chain A domain 1 Region: 7 - 309 Aligned: 293 Modelled: 299 Confidence: 100.0% Identity: 22% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 2var chain B Region: 6 - 309 Aligned: 296 Modelled: 301 Confidence: 100.0% Identity: 19% PDB header:transferase Chain: B: PDB Molecule:fructokinase; PDBTitle: crystal structure of sulfolobus solfataricus 2-keto-3-2 deoxygluconate kinase complexed with 2-keto-3-3 deoxygluconate Phyre2 PDB 2dcn chain A domain 1 Region: 5 - 307 Aligned: 290 Modelled: 302 Confidence: 100.0% Identity: 22% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 1 d1rkda_ 2 c3kzhA_ 3 d2fv7a1 4 c3go6B_ 5 d1vm7a_ 6 c2rbcA_ 7 c2c49A_ 8 c3pl2D_ 9 c2nwhA_ 10 c3i3yB_ 11 c2pkkA_ 12 c3iq0B_ 13 c3in1A_ 14 c3cqdB_ 15 c3b1qD_ 16 d1v19a_ 17 c2qcvA_ 18 d2abqa1 19 c2varB_ 20 d2dcna1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1rkda_ 100.0 100 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 2 c3kzhA_ 100.0 22 PDB header:transferase Chain: A: PDB Molecule:probable sugar kinase; PDBTitle: crystal structure of a putative sugar kinase from2 clostridium perfringens 3 d2fv7a1 100.0 36 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 4 c3go6B_ 100.0 37 PDB header:transferase Chain: B: PDB Molecule:ribokinase rbsk; PDBTitle: crystal structure of m. tuberculosis ribokinase (rv2436) in2 complex with ribose and amp-pnp 5 d1vm7a_ 100.0 39 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 6 c2rbcA_ 100.0 22 PDB header:transferase Chain: A: PDB Molecule:sugar kinase; PDBTitle: crystal structure of a putative ribokinase from agrobacterium2 tumefaciens 7 c2c49A_ 100.0 21 PDB header:transferase Chain: A: PDB Molecule:sugar kinase mj0406; PDBTitle: crystal structure of methanocaldococcus jannaschii2 nucleoside kinase - an archaeal member of the ribokinase3 family 8 c3pl2D_ 100.0 25 PDB header:transferase Chain: D: PDB Molecule:sugar kinase, ribokinase family; PDBTitle: crystal structure of a 5-keto-2-deoxygluconokinase (ncgl0155, cgl0158)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.89 a3 resolution 9 c2nwhA_ 100.0 26 PDB header:signaling protein,transferase Chain: A: PDB Molecule:carbohydrate kinase; PDBTitle: carbohydrate kinase from agrobacterium tumefaciens 10 c3i3yB_ 100.0 31 PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase; PDBTitle: crystal structure of ribokinase in complex with d-ribose from2 klebsiella pneumoniae 11 c2pkkA_ 100.0 19 PDB header:transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of m tuberculosis adenosine kinase complexed with 2-2 fluro adenosine 12 c3iq0B_ 100.0 26 PDB header:transferase Chain: B: PDB Molecule:putative ribokinase ii; PDBTitle: crystal structure of a putative ribokinase ii in complex2 with atp and mg+2 from e.coli 13 c3in1A_ 100.0 27 PDB header:transferase Chain: A: PDB Molecule:uncharacterized sugar kinase ydjh; PDBTitle: crystal structure of a putative ribokinase in complex with2 adp from e.coli 14 c3cqdB_ 100.0 20 PDB header:transferase Chain: B: PDB Molecule:6-phosphofructokinase isozyme 2; PDBTitle: structure of the tetrameric inhibited form of2 phosphofructokinase-2 from escherichia coli 15 c3b1qD_ 100.0 18 PDB header:transferase Chain: D: PDB Molecule:ribokinase, putative; PDBTitle: structure of burkholderia thailandensis nucleoside kinase (bthnk) in2 complex with inosine 16 d1v19a_ 100.0 26 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 17 c2qcvA_ 100.0 23 PDB header:transferase Chain: A: PDB Molecule:putative 5-dehydro-2-deoxygluconokinase; PDBTitle: crystal structure of a putative 5-dehydro-2-deoxygluconokinase (iolc)2 from bacillus halodurans c-125 at 1.90 a resolution 18 d2abqa1 100.0 22 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 19 c2varB_ 100.0 19 PDB header:transferase Chain: B: PDB Molecule:fructokinase; PDBTitle: crystal structure of sulfolobus solfataricus 2-keto-3-2 deoxygluconate kinase complexed with 2-keto-3-3 deoxygluconate 20 d2dcna1 100.0 22 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 21 c2jg1C_ not modelled 100.0 15 PDB header:transferase Chain: C: PDB Molecule:tagatose-6-phosphate kinase; PDBTitle: structure of staphylococcus aureus d-tagatose-6-phosphate2 kinase with cofactor and substrate 22 c2jg5B_ not modelled 100.0 17 PDB header:transferase Chain: B: PDB Molecule:fructose 1-phosphate kinase; PDBTitle: crystal structure of a putative phosphofructokinase from2 staphylococcus aureus 23 c2xtbA_ not modelled 100.0 19 PDB header:transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of trypanosoma brucei rhodesiense2 adenosine kinase complexed with activator 24 d2f02a1 not modelled 100.0 19 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 25 d1bx4a_ not modelled 100.0 26 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 26 c3looC_ not modelled 100.0 22 PDB header:transferase Chain: C: PDB Molecule:anopheles gambiae adenosine kinase; PDBTitle: crystal structure of anopheles gambiae adenosine kinase in complex2 with p1,p4-di(adenosine-5) tetraphosphate 27 c3ktnA_ not modelled 100.0 17 PDB header:transferase Chain: A: PDB Molecule:carbohydrate kinase, pfkb family; PDBTitle: crystal structure of a putative 2-keto-3-deoxygluconate2 kinase from enterococcus faecalis 28 d2afba1 not modelled 100.0 24 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 29 c3gbuD_ not modelled 100.0 25 PDB header:transferase Chain: D: PDB Molecule:uncharacterized sugar kinase ph1459; PDBTitle: crystal structure of an uncharacterized sugar kinase ph1459 from2 pyrococcus horikoshii in complex with atp 30 c3b3lC_ not modelled 100.0 19 PDB header:transferase Chain: C: PDB Molecule:ketohexokinase; PDBTitle: crystal structures of alternatively-spliced isoforms of human2 ketohexokinase 31 d1tyya_ not modelled 100.0 29 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 32 c2absA_ not modelled 100.0 21 PDB header:signaling protein,transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of t. gondii adenosine kinase complexed2 with amp-pcp 33 d2absa1 not modelled 100.0 21 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 34 c3julA_ not modelled 100.0 17 PDB header:transferase Chain: A: PDB Molecule:lin2199 protein; PDBTitle: crystal structure of listeria innocua d-tagatose-6-phosphate2 kinase bound with substrate 35 d2ajra1 not modelled 100.0 16 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 36 c3lkiA_ not modelled 100.0 22 PDB header:transferase Chain: A: PDB Molecule:fructokinase; PDBTitle: crystal structure of fructokinase with bound atp from2 xylella fastidiosa 37 c1tz6B_ not modelled 100.0 30 PDB header:transferase Chain: B: PDB Molecule:putative sugar kinase; PDBTitle: crystal structure of aminoimidazole riboside kinase from2 salmonella enterica complexed with aminoimidazole riboside3 and atp analog 38 c3kd6B_ not modelled 100.0 23 PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase, pfkb family; PDBTitle: crystal structure of nucleoside kinase from chlorobium tepidum in2 complex with amp 39 c3bf5A_ not modelled 100.0 18 PDB header:transferase Chain: A: PDB Molecule:ribokinase related protein; PDBTitle: crystal structure of putative ribokinase (10640157) from thermoplasma2 acidophilum at 1.91 a resolution 40 c2qhpA_ not modelled 100.0 19 PDB header:transferase Chain: A: PDB Molecule:fructokinase; PDBTitle: crystal structure of fructokinase (np_810670.1) from bacteroides2 thetaiotaomicron vpi-5482 at 1.80 a resolution 41 c3lhxA_ not modelled 100.0 20 PDB header:transferase Chain: A: PDB Molecule:ketodeoxygluconokinase; PDBTitle: crystal structure of a ketodeoxygluconokinase (kdgk) from2 shigella flexneri 42 c3hj6B_ not modelled 100.0 24 PDB header:transferase Chain: B: PDB Molecule:fructokinase; PDBTitle: structure of halothermothrix orenii fructokinase (frk) 43 d1vk4a_ not modelled 100.0 17 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 44 c2ddmA_ not modelled 99.9 24 PDB header:transferase Chain: A: PDB Molecule:pyridoxine kinase; PDBTitle: crystal structure of pyridoxal kinase from the escherichia2 coli pdxk gene at 2.1 a resolution 45 d1vi9a_ not modelled 99.7 25 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:PfkB-like kinase 46 c2i5bC_ not modelled 99.7 21 PDB header:transferase Chain: C: PDB Molecule:phosphomethylpyrimidine kinase; PDBTitle: the crystal structure of an adp complex of bacillus2 subtilis pyridoxal kinase provides evidence for the3 parralel emergence of enzyme activity during evolution 47 c3mbjA_ not modelled 99.6 18 PDB header:transferase Chain: A: PDB Molecule:putative phosphomethylpyrimidine kinase; PDBTitle: crystal structure of a putative phosphomethylpyrimidine kinase2 (bt_4458) from bacteroides thetaiotaomicron vpi-5482 at 2.10 a3 resolution (rhombohedral form) 48 d1ub0a_ not modelled 99.6 28 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 49 c3ibqA_ not modelled 99.6 17 PDB header:transferase Chain: A: PDB Molecule:pyridoxal kinase; PDBTitle: crystal structure of pyridoxal kinase from lactobacillus2 plantarum in complex with atp 50 d1lhpa_ not modelled 99.6 23 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:PfkB-like kinase 51 d1jxha_ not modelled 99.4 23 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 52 c3rm5B_ not modelled 99.3 19 PDB header:transferase Chain: B: PDB Molecule:hydroxymethylpyrimidine/phosphomethylpyrimidine kinase PDBTitle: structure of trifunctional thi20 from yeast 53 c3dzvB_ not modelled 98.9 17 PDB header:transferase Chain: B: PDB Molecule:4-methyl-5-(beta-hydroxyethyl)thiazole kinase; PDBTitle: crystal structure of 4-methyl-5-(beta-hydroxyethyl)thiazole2 kinase (np_816404.1) from enterococcus faecalis v583 at3 2.57 a resolution 54 d1kyha_ not modelled 98.8 17 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:YjeF C-terminal domain-like 55 d2ax3a1 not modelled 98.8 11 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:YjeF C-terminal domain-like 56 d1v8aa_ not modelled 98.7 22 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 57 c2ax3A_ not modelled 98.4 10 PDB header:transferase Chain: A: PDB Molecule:hypothetical protein tm0922; PDBTitle: crystal structure of a putative carbohydrate kinase (tm0922) from2 thermotoga maritima msb8 at 2.25 a resolution 58 c2r3bA_ not modelled 97.9 19 PDB header:transferase Chain: A: PDB Molecule:yjef-related protein; PDBTitle: crystal structure of a ribokinase-like superfamily protein (ef1790)2 from enterococcus faecalis v583 at 1.80 a resolution 59 d1ekqa_ not modelled 97.9 18 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 60 c3k5wA_ not modelled 97.9 17 PDB header:transferase Chain: A: PDB Molecule:carbohydrate kinase; PDBTitle: crystal structure of a carbohydrate kinase (yjef family)from2 helicobacter pylori 61 d1gc5a_ not modelled 97.5 19 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase 62 d1u2xa_ not modelled 97.4 16 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase 63 c3nm3D_ not modelled 97.3 19 PDB header:transferase Chain: D: PDB Molecule:thiamine biosynthetic bifunctional enzyme; PDBTitle: the crystal structure of candida glabrata thi6, a bifunctional enzyme2 involved in thiamin biosyhthesis of eukaryotes 64 d1l2la_ not modelled 97.2 17 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase 65 c3drwA_ not modelled 97.2 12 PDB header:transferase Chain: A: PDB Molecule:adp-specific phosphofructokinase; PDBTitle: crystal structure of a phosphofructokinase from pyrococcus2 horikoshii ot3 with amp 66 d1ua4a_ not modelled 97.1 17 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase 67 c3bgkA_ not modelled 96.9 17 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: the crystal structure of hypothetic protein smu.573 from2 streptococcus mutans 68 d2dw4a2 not modelled 60.4 24 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain 69 c3k5iB_ not modelled 44.1 32 PDB header:lyase Chain: B: PDB Molecule:phosphoribosyl-aminoimidazole carboxylase; PDBTitle: crystal structure of n5-carboxyaminoimidazole synthase from2 aspergillus clavatus in complex with adp and 5-3 aminoimadazole ribonucleotide 70 c1c0iA_ not modelled 43.7 36 PDB header:oxidoreductase Chain: A: PDB Molecule:d-amino acid oxidase; PDBTitle: crystal structure of d-amino acid oxidase in complex with2 two anthranylate molecules 71 c3lzxB_ not modelled 38.4 30 PDB header:oxidoreductase Chain: B: PDB Molecule:ferredoxin--nadp reductase 2; PDBTitle: crystal structure of ferredoxin-nadp+ oxidoreductase from bacillus2 subtilis (form ii) 72 c3d3jA_ not modelled 38.2 13 PDB header:protein binding Chain: A: PDB Molecule:enhancer of mrna-decapping protein 3; PDBTitle: crystal structure of human edc3p 73 c2hkoA_ not modelled 35.4 25 PDB header:oxidoreductase Chain: A: PDB Molecule:lysine-specific histone demethylase 1; PDBTitle: crystal structure of lsd1 74 c2x1lC_ not modelled 34.2 11 PDB header:ligase Chain: C: PDB Molecule:methionyl-trna synthetase; PDBTitle: crystal structure of mycobacterium smegmatis methionyl-trna2 synthetase in complex with methionine and adenosine 75 c2v1dA_ not modelled 34.0 25 PDB header:oxidoreductase/repressor Chain: A: PDB Molecule:lysine-specific histone demethylase 1; PDBTitle: structural basis of lsd1-corest selectivity in histone h32 recognition 76 c2xagA_ not modelled 34.0 25 PDB header:transcription Chain: A: PDB Molecule:lysine-specific histone demethylase 1; PDBTitle: crystal structure of lsd1-corest in complex with para-bromo-2 (-)-trans-2-phenylcyclopropyl-1-amine 77 d1p3da1 not modelled 33.5 29 Fold:MurCD N-terminal domain Superfamily:MurCD N-terminal domain Family:MurCD N-terminal domain 78 c3kljA_ not modelled 28.4 35 PDB header:oxidoreductase Chain: A: PDB Molecule:nad(fad)-dependent dehydrogenase, nirb-family (n-terminal PDBTitle: crystal structure of nadh:rubredoxin oxidoreductase from clostridium2 acetobutylicum 79 d1uz5a3 not modelled 28.0 21 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 80 c3crcB_ not modelled 25.7 19 PDB header:hydrolase Chain: B: PDB Molecule:protein mazg; PDBTitle: crystal structure of escherichia coli mazg, the regulator2 of nutritional stress response 81 d1seza1 not modelled 24.9 33 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain 82 c3d8xB_ not modelled 24.4 23 PDB header:oxidoreductase Chain: B: PDB Molecule:thioredoxin reductase 1; PDBTitle: crystal structure of saccharomyces cerevisiae nadph dependent2 thioredoxin reductase 1 83 d1rqga2 not modelled 23.7 12 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain 84 d1c0pa1 not modelled 22.9 36 Fold:Nucleotide-binding domain Superfamily:Nucleotide-binding domain Family:D-aminoacid oxidase, N-terminal domain 85 d1wu2a3 not modelled 22.7 8 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 86 d1pfva2 not modelled 22.1 14 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain 87 c3d3kD_ not modelled 22.0 11 PDB header:protein binding Chain: D: PDB Molecule:enhancer of mrna-decapping protein 3; PDBTitle: crystal structure of human edc3p 88 d2ftsa3 not modelled 21.4 13 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 89 c3allA_ not modelled 21.3 29 PDB header:oxidoreductase Chain: A: PDB Molecule:2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase; PDBTitle: crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid2 oxygenase, mutant y270a 90 c3djeA_ not modelled 20.9 33 PDB header:oxidoreductase Chain: A: PDB Molecule:fructosyl amine: oxygen oxidoreductase; PDBTitle: crystal structure of the deglycating enzyme fructosamine2 oxidase from aspergillus fumigatus (amadoriase ii) in3 complex with fsa 91 c3kbqA_ not modelled 19.4 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein ta0487; PDBTitle: the crystal structure of the protein cina with unknown function from2 thermoplasma acidophilum 92 c2ct8A_ not modelled 19.3 11 PDB header:ligase/rna Chain: A: PDB Molecule:methionyl-trna synthetase; PDBTitle: crystal structure of aquifex aeolicus methionyl-trna2 synthetase complexed with trna(met) and methionyl-adenylate3 anologue 93 d2gtad1 not modelled 18.3 22 Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:MazG-like 94 c2bi8A_ not modelled 17.7 26 PDB header:isomerase Chain: A: PDB Molecule:udp-galactopyranose mutase; PDBTitle: udp-galactopyranose mutase from klebsiella pneumoniae with2 reduced fad 95 d1y5ea1 not modelled 17.3 19 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 96 d1d7ya2 not modelled 17.2 22 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 97 c2vdcI_ not modelled 17.0 29 PDB header:oxidoreductase Chain: I: PDB Molecule:glutamate synthase [nadph] small chain; PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications. 98 c3i3lA_ not modelled 15.4 22 PDB header:hydrolase Chain: A: PDB Molecule:alkylhalidase cmls; PDBTitle: crystal structure of cmls, a flavin-dependent halogenase 99 c1apzB_ not modelled 15.3 12 PDB header:complex (hydrolase/peptide) Chain: B: PDB Molecule:aspartylglucosaminidase; PDBTitle: human aspartylglucosaminidase complex with reaction product

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0