Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	S	T	A	R	S	L	R	Y	A	L	A	I	L	T	T	S	L	V	T	P	S	V	W	A	H	A	H	L	T	H	Q	Y	P	A	A	N	A	Q	V	T	A	A	P	Q	A	I	T	L	N	F	S	E	G	V	E	T	G	F
Secondary structure
SS confidence
Disorder		?	?	?	?																		?	?	?	?	?	?	?			?	?	?			?	?	?	?																	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		S	G	A	K	I	T	G	P	K	N	E	N	I	K	T	L	P	A	K	R	N	E	Q	D	Q	K	Q	L	I	V	P	L	A	D	S	L	K	P	G	T	Y	T	V	D	W	H	V	V	S	V	D	G	H	K	T	K	G	H	Y	T
Secondary structure
SS confidence
Disorder		?									?			?	?	?	?	?	?	?	?	?	?	?	?	?								?	?																?
Disorder confidence
		.	.	.	.
Sequence		F	S	V	K
Secondary structure
SS confidence
Disorder					?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2c9q chain A domain 1 Region: 27 - 124 Aligned: 97 Modelled: 98 Confidence: 99.9% Identity: 39% Fold: Immunoglobulin-like beta-sandwich Superfamily: E set domains Family: Copper resistance protein C (CopC, PcoC) Phyre2 PDB 1ix2 chain A Region: 28 - 124 Aligned: 96 Modelled: 97 Confidence: 99.9% Identity: 41% Fold: Immunoglobulin-like beta-sandwich Superfamily: E set domains Family: Copper resistance protein C (CopC, PcoC) Phyre2 PDB 3isy chain A Region: 43 - 124 Aligned: 79 Modelled: 82 Confidence: 96.9% Identity: 19% PDB header:protein binding Chain: A: PDB Molecule:intracellular proteinase inhibitor; PDBTitle: crystal structure of an intracellular proteinase inhibitor (ipi,2 bsu11130) from bacillus subtilis at 2.61 a resolution Phyre2 PDB 2xwx chain B Region: 40 - 124 Aligned: 83 Modelled: 85 Confidence: 96.3% Identity: 12% PDB header:chitin-binding protein Chain: B: PDB Molecule:glcnac-binding protein a; PDBTitle: vibrio cholerae colonization factor gbpa crystal structure Phyre2 PDB 2r5o chain A Region: 47 - 123 Aligned: 77 Modelled: 77 Confidence: 95.7% Identity: 12% PDB header:transport protein Chain: A: PDB Molecule:putative atp binding component of abc- PDBTitle: crystal structure of the c-terminal domain of wzt Phyre2 PDB 3c12 chain A Region: 35 - 116 Aligned: 80 Modelled: 80 Confidence: 95.4% Identity: 19% PDB header:biosynthetic protein Chain: A: PDB Molecule:flagellar protein; PDBTitle: crystal structure of flgd from xanthomonas campestris:2 insights into the hook capping essential for flagellar3 assembly Phyre2 PDB 2p9r chain A Region: 53 - 124 Aligned: 68 Modelled: 72 Confidence: 95.1% Identity: 21% PDB header:signaling protein Chain: A: PDB Molecule:alpha-2-macroglobulin; PDBTitle: human alpha2-macroglogulin is composed of multiple domains,2 as predicted by homology with complement component c3 Phyre2 PDB 2x5p chain A Region: 38 - 124 Aligned: 77 Modelled: 87 Confidence: 94.6% Identity: 25% PDB header:protein binding Chain: A: PDB Molecule:fibronectin binding protein; PDBTitle: crystal structure of the streptococcus pyogenes fibronectin binding2 protein fbab-b Phyre2 PDB 3pe9 chain B Region: 33 - 124 Aligned: 78 Modelled: 92 Confidence: 94.2% Identity: 12% PDB header:unknown function Chain: B: PDB Molecule:fibronectin(iii)-like module; PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules Phyre2 PDB 3d33 chain B Region: 46 - 120 Aligned: 68 Modelled: 75 Confidence: 93.3% Identity: 15% PDB header:unknown function Chain: B: PDB Molecule:domain of unknown function with an immunoglobulin-like PDBTitle: crystal structure of a duf3244 family protein with an immunoglobulin-2 like beta-sandwich fold (bvu_0276) from bacteroides vulgatus atcc3 8482 at 1.70 a resolution Phyre2 PDB 2e59 chain A Region: 47 - 123 Aligned: 76 Modelled: 77 Confidence: 93.0% Identity: 13% PDB header:lipid binding protein Chain: A: PDB Molecule:lymphocyte antigen 96; PDBTitle: crystal structure of human md-2 in complex with lipid iva Phyre2 PDB 3osv chain C Region: 38 - 122 Aligned: 85 Modelled: 85 Confidence: 92.3% Identity: 9% PDB header:structural protein Chain: C: PDB Molecule:flagellar basal-body rod modification protein flgd; PDBTitle: the crytsal structure of flgd from p. aeruginosa Phyre2 PDB 3pdg chain A Region: 33 - 124 Aligned: 82 Modelled: 92 Confidence: 91.3% Identity: 17% PDB header:unknown function Chain: A: PDB Molecule:fibronectin(iii)-like module; PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules Phyre2 PDB 3cu7 chain A Region: 48 - 124 Aligned: 75 Modelled: 77 Confidence: 91.2% Identity: 13% PDB header:immune system Chain: A: PDB Molecule:complement c5; PDBTitle: human complement component 5 Phyre2 PDB 3jqx chain A Region: 43 - 124 Aligned: 71 Modelled: 78 Confidence: 90.1% Identity: 13% PDB header:cell adhesion Chain: A: PDB Molecule:colh protein; PDBTitle: crystal structure of clostridium histolyticum colh collagenase2 collagen binding domain 3 at 2.2 angstrom resolution in the presence3 of calcium and cademium Phyre2 PDB 3mu3 chain A Region: 87 - 124 Aligned: 37 Modelled: 38 Confidence: 89.6% Identity: 22% PDB header:immune system Chain: A: PDB Molecule:protein md-1; PDBTitle: crystal structure of chicken md-1 complexed with lipid iva Phyre2 PDB 3pe9 chain D Region: 33 - 124 Aligned: 77 Modelled: 90 Confidence: 88.3% Identity: 13% PDB header:unknown function Chain: D: PDB Molecule:fibronectin(iii)-like module; PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules Phyre2 PDB 3pe9 chain C Region: 33 - 124 Aligned: 81 Modelled: 91 Confidence: 88.1% Identity: 12% PDB header:unknown function Chain: C: PDB Molecule:fibronectin(iii)-like module; PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules Phyre2 PDB 3pe9 chain A Region: 33 - 124 Aligned: 81 Modelled: 92 Confidence: 88.1% Identity: 12% PDB header:unknown function Chain: A: PDB Molecule:fibronectin(iii)-like module; PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules Phyre2 PDB 2pn5 chain A Region: 62 - 124 Aligned: 59 Modelled: 63 Confidence: 87.9% Identity: 20% PDB header:immune system Chain: A: PDB Molecule:thioester-containing protein i; PDBTitle: crystal structure of tep1r Phyre2 PDB 3nme chain A Region: 5 - 113 Aligned: 100 Modelled: 98 Confidence: 59.1% Identity: 20% PDB header:hydrolase Chain: A: PDB Molecule:sex4 glucan phosphatase; PDBTitle: structure of a plant phosphatase Phyre2 1 d2c9qa1 2 d1ix2a_ 3 c3isyA_ 4 c2xwxB_ 5 c2r5oA_ 6 c3c12A_ 7 c2p9rA_ 8 c2x5pA_ 9 c3pe9B_ 10 c3d33B_ 11 c2e59A_ 12 c3osvC_ 13 c3pdgA_ 14 c3cu7A_ 15 c3jqxA_ 16 c3mu3A_ 17 c3pe9D_ 18 c3pe9C_ 19 c3pe9A_ 20 c2pn5A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 c3nmeA_ 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2c9qa1 99.9 39 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Copper resistance protein C (CopC, PcoC) 2 d1ix2a_ 99.9 41 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Copper resistance protein C (CopC, PcoC) 3 c3isyA_ 96.9 19 PDB header:protein binding Chain: A: PDB Molecule:intracellular proteinase inhibitor; PDBTitle: crystal structure of an intracellular proteinase inhibitor (ipi,2 bsu11130) from bacillus subtilis at 2.61 a resolution 4 c2xwxB_ 96.3 12 PDB header:chitin-binding protein Chain: B: PDB Molecule:glcnac-binding protein a; PDBTitle: vibrio cholerae colonization factor gbpa crystal structure 5 c2r5oA_ 95.7 12 PDB header:transport protein Chain: A: PDB Molecule:putative atp binding component of abc- PDBTitle: crystal structure of the c-terminal domain of wzt 6 c3c12A_ 95.4 19 PDB header:biosynthetic protein Chain: A: PDB Molecule:flagellar protein; PDBTitle: crystal structure of flgd from xanthomonas campestris:2 insights into the hook capping essential for flagellar3 assembly 7 c2p9rA_ 95.1 21 PDB header:signaling protein Chain: A: PDB Molecule:alpha-2-macroglobulin; PDBTitle: human alpha2-macroglogulin is composed of multiple domains,2 as predicted by homology with complement component c3 8 c2x5pA_ 94.6 25 PDB header:protein binding Chain: A: PDB Molecule:fibronectin binding protein; PDBTitle: crystal structure of the streptococcus pyogenes fibronectin binding2 protein fbab-b 9 c3pe9B_ 94.2 12 PDB header:unknown function Chain: B: PDB Molecule:fibronectin(iii)-like module; PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules 10 c3d33B_ 93.3 15 PDB header:unknown function Chain: B: PDB Molecule:domain of unknown function with an immunoglobulin-like PDBTitle: crystal structure of a duf3244 family protein with an immunoglobulin-2 like beta-sandwich fold (bvu_0276) from bacteroides vulgatus atcc3 8482 at 1.70 a resolution 11 c2e59A_ 93.0 13 PDB header:lipid binding protein Chain: A: PDB Molecule:lymphocyte antigen 96; PDBTitle: crystal structure of human md-2 in complex with lipid iva 12 c3osvC_ 92.3 9 PDB header:structural protein Chain: C: PDB Molecule:flagellar basal-body rod modification protein flgd; PDBTitle: the crytsal structure of flgd from p. aeruginosa 13 c3pdgA_ 91.3 17 PDB header:unknown function Chain: A: PDB Molecule:fibronectin(iii)-like module; PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules 14 c3cu7A_ 91.2 13 PDB header:immune system Chain: A: PDB Molecule:complement c5; PDBTitle: human complement component 5 15 c3jqxA_ 90.1 13 PDB header:cell adhesion Chain: A: PDB Molecule:colh protein; PDBTitle: crystal structure of clostridium histolyticum colh collagenase2 collagen binding domain 3 at 2.2 angstrom resolution in the presence3 of calcium and cademium 16 c3mu3A_ 89.6 22 PDB header:immune system Chain: A: PDB Molecule:protein md-1; PDBTitle: crystal structure of chicken md-1 complexed with lipid iva 17 c3pe9D_ 88.3 13 PDB header:unknown function Chain: D: PDB Molecule:fibronectin(iii)-like module; PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules 18 c3pe9C_ 88.1 12 PDB header:unknown function Chain: C: PDB Molecule:fibronectin(iii)-like module; PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules 19 c3pe9A_ 88.1 12 PDB header:unknown function Chain: A: PDB Molecule:fibronectin(iii)-like module; PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules 20 c2pn5A_ 87.9 20 PDB header:immune system Chain: A: PDB Molecule:thioester-containing protein i; PDBTitle: crystal structure of tep1r 21 d1nepa_ not modelled 87.9 9 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:ML domain 22 d1w8oa1 not modelled 87.8 12 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 23 d1nqjb_ not modelled 87.1 20 Fold:CUB-like Superfamily:Collagen-binding domain Family:Collagen-binding domain 24 c2b39B_ not modelled 86.8 15 PDB header:immune system Chain: B: PDB Molecule:c3; PDBTitle: structure of mammalian c3 with an intact thioester at 3a resolution 25 c2kpnA_ not modelled 85.5 36 PDB header:hydrolase Chain: A: PDB Molecule:bacillolysin; PDBTitle: solution nmr structure of a bacterial ig-like (big_3) domain from2 bacillus cereus. northeast structural genomics consortium target3 bcr147a 26 c2ra1A_ not modelled 84.5 11 PDB header:sugar binding protein Chain: A: PDB Molecule:surface layer protein; PDBTitle: crystal structure of the n-terminal part of the bacterial s-layer2 protein sbsc 27 c2qkiA_ not modelled 83.8 13 PDB header:immune system/hydrolase inhibitor Chain: A: PDB Molecule:complement c3; PDBTitle: human c3c in complex with the inhibitor compstatin 28 c3ottB_ not modelled 83.4 16 PDB header:transcription Chain: B: PDB Molecule:two-component system sensor histidine kinase; PDBTitle: crystal structure of the extracellular domain of the putative one2 component system bt4673 from b. thetaiotaomicron 29 c3m7oB_ not modelled 81.9 10 PDB header:immune system Chain: B: PDB Molecule:lymphocyte antigen 86; PDBTitle: crystal structure of mouse md-1 in complex with phosphatidylcholine 30 c3kptA_ not modelled 81.2 16 PDB header:cell adhesion Chain: A: PDB Molecule:collagen adhesion protein; PDBTitle: crystal structure of bcpa, the major pilin subunit of2 bacillus cereus 31 d2a9da1 not modelled 80.1 8 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Molybdenum-containing oxidoreductases-like dimerisation domain 32 c2k7pA_ not modelled 79.7 17 PDB header:structural protein Chain: A: PDB Molecule:filamin-a; PDBTitle: filamin a ig-like domains 16-17 33 c3pddA_ not modelled 75.6 16 PDB header:unknown function Chain: A: PDB Molecule:glycoside hydrolase, family 9; PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules 34 d1owwa_ not modelled 75.6 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 35 c2z64C_ not modelled 74.7 11 PDB header:immune system Chain: C: PDB Molecule:lymphocyte antigen 96; PDBTitle: crystal structure of mouse tlr4 and mouse md-2 complex 36 c2bpbA_ not modelled 73.8 11 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite\:cytochrome c oxidoreductase subunit a; PDBTitle: sulfite dehydrogenase from starkeya novella 37 d1nqja_ not modelled 73.8 20 Fold:CUB-like Superfamily:Collagen-binding domain Family:Collagen-binding domain 38 c3sd2A_ not modelled 70.9 15 PDB header:unknown function Chain: A: PDB Molecule:putative member of duf3244 protein family; PDBTitle: crystal structure of a putative member of duf3244 protein family2 (bt_3571) from bacteroides thetaiotaomicron vpi-5482 at 1.40 a3 resolution 39 d2bvya1 not modelled 70.7 18 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 40 d1pfsa_ not modelled 68.7 19 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Phage ssDNA-binding proteins 41 d2diba1 not modelled 64.7 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 42 c2di7A_ not modelled 64.6 10 PDB header:structural protein Chain: A: PDB Molecule:bk158_1; PDBTitle: solution structure of the filamin domain from human bk158_12 protein 43 c3hrzA_ not modelled 64.0 14 PDB header:immune system Chain: A: PDB Molecule:cobra venom factor; PDBTitle: cobra venom factor (cvf) in complex with human factor b 44 c3qhtC_ not modelled 63.3 13 PDB header:de novo protein Chain: C: PDB Molecule:monobody ysmb-1; PDBTitle: crystal structure of the monobody ysmb-1 bound to yeast sumo 45 c2yrlA_ not modelled 62.9 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:kiaa1837 protein; PDBTitle: solution structure of the pkd domain from kiaa 1837 protein 46 c3payB_ not modelled 60.8 16 PDB header:cell adhesion Chain: B: PDB Molecule:putative adhesin; PDBTitle: crystal structure of a putative adhesin (bacova_04077) from2 bacteroides ovatus at 2.50 a resolution 47 c3nmeA_ 59.1 20 PDB header:hydrolase Chain: A: PDB Molecule:sex4 glucan phosphatase; PDBTitle: structure of a plant phosphatase 48 c2ds4A_ not modelled 57.0 18 PDB header:protein binding Chain: A: PDB Molecule:tripartite motif protein 45; PDBTitle: solution structure of the filamin domain from human2 tripartite motif protein 45 49 c3a0oB_ not modelled 56.9 14 PDB header:lyase Chain: B: PDB Molecule:oligo alginate lyase; PDBTitle: crystal structure of alginate lyase from agrobacterium tumefaciens c58 50 c3gf8A_ not modelled 56.2 10 PDB header:carbohydrate binding protein Chain: A: PDB Molecule:putative polysaccharide binding proteins (duf1812); PDBTitle: crystal structure of putative polysaccharide binding proteins2 (duf1812) (np_809975.1) from bacteroides thetaiotaomicron vpi-5482 at3 2.20 a resolution 51 c3irpX_ not modelled 54.9 16 PDB header:cell adhesion Chain: X: PDB Molecule:uro-adherence factor a; PDBTitle: crystal structure of functional region of uafa from staphylococcus2 saprophyticus at 1.50 angstrom resolution 52 d3csba1 not modelled 54.7 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 53 c1ttfA_ not modelled 54.5 17 PDB header:glycoprotein Chain: A: PDB Molecule:fibronectin; PDBTitle: the three-dimensional structure of the tenth type iii2 module of fibronectin: an insight into rgd-mediated3 interactions 54 c1ttgA_ not modelled 54.5 17 PDB header:glycoprotein Chain: A: PDB Molecule:fibronectin; PDBTitle: the three-dimensional structure of the tenth type iii2 module of fibronectin: an insight into rgd-mediated3 interactions 55 d2d7na1 not modelled 54.3 17 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 56 c3pvmB_ not modelled 53.3 10 PDB header:immune system Chain: B: PDB Molecule:cobra venom factor; PDBTitle: structure of complement c5 in complex with cvf 57 c2w1wB_ not modelled 52.2 13 PDB header:hydrolase Chain: B: PDB Molecule:lipolytic enzyme, g-d-s-l; PDBTitle: native structure of a family 35 carbohydrate binding module2 from clostridium thermocellum 58 d1uwya1 not modelled 51.7 11 Fold:Prealbumin-like Superfamily:Carboxypeptidase regulatory domain-like Family:Carboxypeptidase regulatory domain 59 c3jquA_ not modelled 50.0 32 PDB header:cell adhesion Chain: A: PDB Molecule:collagenase; PDBTitle: crystal structure of clostridium histolyticum colg collagenase2 polycystic kidney disease domain at 1.4 angstrom resolution 60 c2yetB_ not modelled 50.0 11 PDB header:hydrolase Chain: B: PDB Molecule:gh61 isozyme a; PDBTitle: thermoascus gh61 isozyme a 61 d2diaa1 not modelled 49.5 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 62 c3l48B_ not modelled 49.1 14 PDB header:transport protein Chain: B: PDB Molecule:outer membrane usher protein papc; PDBTitle: crystal structure of the c-terminal domain of the papc usher 63 c1qfhB_ not modelled 48.8 25 PDB header:actin binding protein Chain: B: PDB Molecule:protein (gelation factor); PDBTitle: dimerization of gelation factor from dictyostelium2 discoideum: crystal structure of rod domains 5 and 6 64 d1xwva_ not modelled 48.6 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:ML domain 65 c3rzwA_ not modelled 48.6 15 PDB header:protein binding Chain: A: PDB Molecule:monobody ysmb-9; PDBTitle: crystal structure of the monobody ysmb-9 bound to human sumo1 66 d2ag4a1 not modelled 48.0 24 Fold:Ganglioside M2 (gm2) activator Superfamily:Ganglioside M2 (gm2) activator Family:Ganglioside M2 (gm2) activator 67 c2xetB_ not modelled 47.6 16 PDB header:transport protein Chain: B: PDB Molecule:f1 capsule-anchoring protein; PDBTitle: conserved hydrophobic clusters on the surface of the caf1a usher2 c-terminal domain are important for f1 antigen assembly 68 c3ejaB_ not modelled 47.4 19 PDB header:unknown function Chain: B: PDB Molecule:protein gh61e; PDBTitle: magnesium-bound glycoside hydrolase 61 isoform e from thielavia2 terrestris 69 c3mn8A_ not modelled 46.7 17 PDB header:hydrolase Chain: A: PDB Molecule:lp15968p; PDBTitle: structure of drosophila melanogaster carboxypeptidase d isoform 1b2 short 70 d1fnfa2 not modelled 46.5 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 71 d1lmia_ not modelled 46.5 36 Fold:Immunoglobulin-like beta-sandwich Superfamily:Antigen MPT63/MPB63 (immunoprotective extracellular protein) Family:Antigen MPT63/MPB63 (immunoprotective extracellular protein) 72 c2o6dB_ not modelled 46.3 20 PDB header:membrane protein, protein binding Chain: B: PDB Molecule:34 kda membrane antigen; PDBTitle: structure of native rtp34 from treponema pallidum 73 c2o0i1_ not modelled 46.0 15 PDB header:surface active protein Chain: 1: PDB Molecule:c protein alpha-antigen; PDBTitle: crystal structure of the r185a mutant of the n-terminal domain of the2 group b streptococcus alpha c protein 74 d1tdqa2 not modelled 44.9 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 75 d1v5ja_ not modelled 43.1 12 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 76 c2v4vA_ not modelled 42.7 14 PDB header:hydrolase Chain: A: PDB Molecule:gh59 galactosidase; PDBTitle: crystal structure of a family 6 carbohydrate-binding module2 from clostridium cellulolyticum in complex with xylose 77 d2dmca1 not modelled 41.4 12 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 78 d1ex0a1 not modelled 41.2 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Transglutaminase N-terminal domain 79 c2ocfD_ not modelled 41.1 17 PDB header:hormone/growth factor Chain: D: PDB Molecule:fibronectin; PDBTitle: human estrogen receptor alpha ligand-binding domain in complex with2 estradiol and the e2#23 fn3 monobody 80 c2a9dB_ not modelled 40.3 10 PDB header:oxidoreductase Chain: B: PDB Molecule:sulfite oxidase; PDBTitle: crystal structure of recombinant chicken sulfite oxidase with arg at2 residue 161 81 c2k7qA_ not modelled 39.6 15 PDB header:structural protein Chain: A: PDB Molecule:filamin-a; PDBTitle: filamin a ig-like domains 18-19 82 c2e9jA_ not modelled 39.6 12 PDB header:structural protein Chain: A: PDB Molecule:filamin-b; PDBTitle: solution structure of the 14th filamin domain from human2 filamin-b 83 c2vtcB_ not modelled 39.4 18 PDB header:hydrolase Chain: B: PDB Molecule:cel61b; PDBTitle: the structure of a glycoside hydrolase family 61 member,2 cel61b from the hypocrea jecorina. 84 d1ktja_ not modelled 39.2 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:ML domain 85 d1qfha1 not modelled 38.9 25 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 86 c2dtgE_ not modelled 38.8 17 PDB header:hormone receptor/immune system Chain: E: PDB Molecule:insulin receptor; PDBTitle: insulin receptor (ir) ectodomain in complex with fab's 87 d2fnba_ not modelled 37.6 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 88 d1tfpa_ not modelled 36.9 8 Fold:Prealbumin-like Superfamily:Transthyretin (synonym: prealbumin) Family:Transthyretin (synonym: prealbumin) 89 d1cwva3 not modelled 36.5 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:Invasin/intimin cell-adhesion fragments Family:Invasin/intimin cell-adhesion fragments 90 c2xtsC_ not modelled 35.9 9 PDB header:oxidoreductase/electron transport Chain: C: PDB Molecule:sulfite dehydrogenase; PDBTitle: crystal structure of the sulfane dehydrogenase soxcd from paracoccus2 pantotrophus 91 d1fnha3 not modelled 35.2 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 92 d2d7oa1 not modelled 34.2 22 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 93 c2jxpA_ not modelled 34.2 8 PDB header:lipoprotein Chain: A: PDB Molecule:putative lipoprotein b; PDBTitle: solution nmr structure of uncharacterized lipoprotein b2 from nitrosomonas europaea. northeast structural genomics3 target ner45a 94 c3qhtD_ not modelled 33.6 13 PDB header:de novo protein Chain: D: PDB Molecule:monobody ysmb-1; PDBTitle: crystal structure of the monobody ysmb-1 bound to yeast sumo 95 c3nrqB_ not modelled 33.3 11 PDB header:transport protein Chain: B: PDB Molecule:periplasmic protein-probably involved in high-affinity fe2+ PDBTitle: crystal structure of copper-reconstituted fetp from uropathogenic2 escherichia coli strain f11 96 c2kzwA_ not modelled 32.9 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of q8psa4 from methanosarcina mazei, northeast2 structural genomics consortium target mar143a 97 c3iswA_ not modelled 32.9 17 PDB header:structural protein Chain: A: PDB Molecule:filamin-a; PDBTitle: crystal structure of filamin-a immunoglobulin-like repeat 21 bound to2 an n-terminal peptide of cftr 98 c1uwyA_ not modelled 32.5 11 PDB header:hydrolase Chain: A: PDB Molecule:carboxypeptidase m; PDBTitle: crystal structure of human carboxypeptidase m 99 d1ut9a2 not modelled 31.2 12 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 100 c3rghA_ not modelled 31.2 27 PDB header:cell adhesion Chain: A: PDB Molecule:filamin-a; PDBTitle: structure of filamin a immunoglobulin-like repeat 10 from homo sapiens 101 c2xicB_ not modelled 30.7 25 PDB header:cell adhesion Chain: B: PDB Molecule:ancillary protein 1; PDBTitle: pilus-presented adhesin, spy0125 (cpa), p212121 form (esrf data) 102 c3lxuX_ not modelled 30.6 18 PDB header:hydrolase Chain: X: PDB Molecule:tripeptidyl-peptidase 2; PDBTitle: crystal structure of tripeptidyl peptidase 2 (tpp ii) 103 c2lllA_ not modelled 28.4 10 PDB header:structural protein Chain: A: PDB Molecule:lamin-b2; PDBTitle: solution nmr structure of c-terminal globular domain of human lamin-2 b2, northeast structural genomics consortium target hr8546a 104 d1qfha2 not modelled 28.2 20 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 105 d1ogpa1 not modelled 27.8 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Molybdenum-containing oxidoreductases-like dimerisation domain 106 d1w9sa_ not modelled 27.3 14 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:Family 6 carbohydrate binding module, CBM6 107 d2qfra1 not modelled 26.7 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:Purple acid phosphatase, N-terminal domain Family:Purple acid phosphatase, N-terminal domain 108 c2gpzC_ not modelled 26.7 17 PDB header:hydrolase Chain: C: PDB Molecule:transthyretin-like protein; PDBTitle: transthyretin-like protein from salmonella dublin 109 c3gzkA_ not modelled 26.5 18 PDB header:hydrolase Chain: A: PDB Molecule:cellulase; PDBTitle: structure of a. acidocaldarius cellulase cela 110 c3uyoD_ not modelled 26.5 15 PDB header:signaling protein/protein binding Chain: D: PDB Molecule:monobody sh13; PDBTitle: crystal structure of monobody sh13/abl1 sh2 domain complex 111 d2e9ia1 not modelled 26.3 17 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 112 d2dj4a1 not modelled 25.9 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 113 c2nsmA_ not modelled 25.8 17 PDB header:hydrolase Chain: A: PDB Molecule:carboxypeptidase n catalytic chain; PDBTitle: crystal structure of the human carboxypeptidase n (kininase i)2 catalytic domain 114 d1ufga_ not modelled 25.8 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain 115 c2e7mA_ not modelled 25.0 22 PDB header:structural protein Chain: A: PDB Molecule:protein kiaa0319; PDBTitle: solution structure of the pkd domain (329-428) from human2 kiaa0319 116 d1tdqa1 not modelled 24.5 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 117 c2w3jA_ not modelled 24.4 15 PDB header:sugar-binding protein Chain: A: PDB Molecule:carbohydrate binding module; PDBTitle: structure of a family 35 carbohydrate binding module from2 an environmental isolate 118 c3d30A_ not modelled 23.8 30 PDB header:peptidoglycan-binding protein Chain: A: PDB Molecule:expansin like protein; PDBTitle: structure of an expansin like protein from bacillus subtilis at 1.9a2 resolution 119 d1kmta_ not modelled 23.7 17 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:RhoGDI-like 120 d1doab_ not modelled 22.9 17 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:RhoGDI-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0