Email l.a.kelley@imperial.ac.uk Description P15078 Date Thu Jan 5 11:34:36 GMT 2012 Unique Job ID 418770152a832dd9

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3giaA_ 97.0 16 PDB header:transport protein Chain: A: PDB Molecule:uncharacterized protein mj0609; PDBTitle: crystal structure of apct transporter 2 c2jlnA_ 96.9 15 PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter 3 c3lrcC_ 94.8 15 PDB header:transport protein Chain: C: PDB Molecule:arginine/agmatine antiporter; PDBTitle: structure of e. coli adic (p1) 4 c2xq2A_ 94.0 15 PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: structure of the k294a mutant of vsglt 5 c3dh4A_ 87.2 13 PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus 6 c3a8qB_ 42.1 70 PDB header:signaling protein Chain: B: PDB Molecule:t-lymphoma invasion and metastasis-inducing PDBTitle: low-resolution crystal structure of the tiam2 phccex domain 7 c3a8nA_ 40.7 58 PDB header:signaling protein Chain: A: PDB Molecule:t-lymphoma invasion and metastasis-inducing PDBTitle: crystal structure of the tiam1 phccex domain 8 c3pl0B_ 38.2 44 PDB header:biosynthetic protein Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a bsma homolog (mpe_a2762) from methylobium2 petroleophilum pm1 at 1.91 a resolution 9 d2axtj1 27.7 36 Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein J, PsbJ Family:PsbJ-like 10 d2bfdb2 27.3 4 Fold:TK C-terminal domain-like Superfamily:TK C-terminal domain-like Family:Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain 11 d1rp4a_ 26.8 36 Fold:ERO1-like Superfamily:ERO1-like Family:ERO1-like 12 c3hd6A_ 26.3 14 PDB header:membrane protein, transport protein Chain: A: PDB Molecule:ammonium transporter rh type c; PDBTitle: crystal structure of the human rhesus glycoprotein rhcg 13 c2k9pA_ 26.3 18 PDB header:membrane protein Chain: A: PDB Molecule:pheromone alpha factor receptor; PDBTitle: structure of tm1_tm2 in lppg micelles 14 d1h5pa_ 24.8 33 Fold:SAND domain-like Superfamily:SAND domain-like Family:SAND domain 15 c2ktlA_ 24.5 16 PDB header:ligase Chain: A: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: structure of c-terminal domain from mttyrrs of a. nidulans 16 d1qs0b2 24.1 15 Fold:TK C-terminal domain-like Superfamily:TK C-terminal domain-like Family:Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain 17 d2jeka1 23.7 19 Fold:Rv1873-like Superfamily:Rv1873-like Family:Rv1873-like 18 d1oqja_ 23.6 20 Fold:SAND domain-like Superfamily:SAND domain-like Family:SAND domain 19 d1s6la1 23.5 31 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MerB N-terminal domain-like 20 c3b9yA_ 23.3 11 PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter family rh-like protein; PDBTitle: crystal structure of the nitrosomonas europaea rh protein 21 d1afra_ not modelled 23.0 30 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 22 d1ufna_ not modelled 22.4 27 Fold:SAND domain-like Superfamily:SAND domain-like Family:SAND domain 23 c3zy6A_ not modelled 22.4 21 PDB header:transferase Chain: A: PDB Molecule:putative gdp-fucose protein o-fucosyltransferase 1; PDBTitle: crystal structure of pofut1 in complex with gdp-fucose2 (crystal-form-ii) 24 d1ik6a2 not modelled 21.2 12 Fold:TK C-terminal domain-like Superfamily:TK C-terminal domain-like Family:Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain 25 d2awia1 not modelled 20.7 29 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:PrgX N-terminal domain-like 26 c3iymA_ not modelled 20.6 35 PDB header:virus Chain: A: PDB Molecule:capsid protein; PDBTitle: backbone trace of the capsid protein dimer of a fungal partitivirus2 from electron cryomicroscopy and homology modeling 27 c2qx5B_ not modelled 19.9 12 PDB header:transport protein Chain: B: PDB Molecule:nucleoporin nic96; PDBTitle: structure of nucleoporin nic96 28 d2ozlb2 not modelled 19.5 10 Fold:TK C-terminal domain-like Superfamily:TK C-terminal domain-like Family:Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain 29 c3ahrA_ not modelled 19.0 33 PDB header:oxidoreductase Chain: A: PDB Molecule:ero1-like protein alpha; PDBTitle: inactive human ero1 30 c3pppA_ not modelled 18.8 11 PDB header:transport protein Chain: A: PDB Molecule:glycine betaine/carnitine/choline-binding protein; PDBTitle: structures of the substrate-binding protein provide insights into the2 multiple compatible solutes binding specificities of bacillus3 subtilis abc transporter opuc 31 d1w85b2 not modelled 17.5 28 Fold:TK C-terminal domain-like Superfamily:TK C-terminal domain-like Family:Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain 32 d2fug61 not modelled 17.3 36 Fold:HydA/Nqo6-like Superfamily:HydA/Nqo6-like Family:Nq06-like 33 d1i0za2 not modelled 17.2 21 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 34 d1llda2 not modelled 17.0 29 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 35 d2yrka1 not modelled 16.8 27 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:HkH motif-containing C2H2 finger 36 d9ldta2 not modelled 16.7 25 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 37 c2lbfA_ not modelled 16.6 43 PDB header:ribosomal protein Chain: A: PDB Molecule:60s acidic ribosomal protein p1; PDBTitle: solution structure of the dimerization domain of human ribosomal2 protein p1/p2 heterodimer 38 d1nekd_ not modelled 16.6 13 Fold:Heme-binding four-helical bundle Superfamily:Fumarate reductase respiratory complex transmembrane subunits Family:Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD) 39 c2k42A_ not modelled 16.4 15 PDB header:signaling protein Chain: A: PDB Molecule:wiskott-aldrich syndrome protein; PDBTitle: solution structure of the gtpase binding domain of wasp in2 complex with espfu, an ehec effector 40 c2elnA_ not modelled 16.2 50 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 406; PDBTitle: solution structure of the 11th c2h2 zinc finger of human2 zinc finger protein 406 41 c3iz5t_ not modelled 15.8 43 PDB header:ribosome Chain: T: PDB Molecule:60s ribosomal protein l19 (l19e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 42 c3nctC_ not modelled 15.8 22 PDB header:dna binding protein, chaperone Chain: C: PDB Molecule:protein psib; PDBTitle: x-ray crystal structure of the bacterial conjugation factor psib, a2 negative regulator of reca 43 c2etjA_ not modelled 15.7 67 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease hii; PDBTitle: crystal structure of ribonuclease hii (ec 3.1.26.4) (rnase hii)2 (tm0915) from thermotoga maritima at 1.74 a resolution 44 d2etja1 not modelled 15.7 67 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Ribonuclease H 45 d1fvka_ not modelled 15.7 29 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbA-like 46 d1i10a2 not modelled 15.7 25 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 47 d1umdb2 not modelled 15.6 19 Fold:TK C-terminal domain-like Superfamily:TK C-terminal domain-like Family:Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain 48 c1x4rA_ not modelled 15.2 29 PDB header:apoptosis Chain: A: PDB Molecule:parp14 protein; PDBTitle: solution structure of wwe domain in parp14 protein 49 d1oeya_ not modelled 15.0 20 Fold:beta-Grasp (ubiquitin-like) Superfamily:CAD & PB1 domains Family:PB1 domain 50 d1d4va1 not modelled 14.9 38 Fold:TNF receptor-like Superfamily:TNF receptor-like Family:TNF receptor-like 51 c2k1aA_ not modelled 14.8 45 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment 52 c3es4B_ not modelled 14.2 31 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein duf861 with a rmlc-like cupin fold; PDBTitle: crystal structure of protein of unknown function (duf861) with a rmlc-2 like cupin fold (17741406) from agrobacterium tumefaciens str. c583 (dupont) at 1.64 a resolution 53 c3o66A_ not modelled 14.2 11 PDB header:transport protein Chain: A: PDB Molecule:glycine betaine/carnitine/choline abc transporter; PDBTitle: crystal structure of glycine betaine/carnitine/choline abc transporter 54 c1yewI_ not modelled 14.1 40 PDB header:oxidoreductase, membrane protein Chain: I: PDB Molecule:particulate methane monooxygenase, b subunit; PDBTitle: crystal structure of particulate methane monooxygenase 55 c2dnfA_ not modelled 14.0 13 PDB header:protein binding Chain: A: PDB Molecule:doublecortin domain-containing protein 2; PDBTitle: solution structure of rsgi ruh-062, a dcx domain from human 56 d1hyha2 not modelled 14.0 13 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 57 d5csma_ not modelled 14.0 20 Fold:Chorismate mutase II Superfamily:Chorismate mutase II Family:Allosteric chorismate mutase 58 d1rxwa1 not modelled 13.9 20 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 59 c2j8lB_ not modelled 13.9 43 PDB header:hydrolase Chain: B: PDB Molecule:coagulation factor xi; PDBTitle: fxi apple 4 domain loop-out conformation 60 d1i39a_ not modelled 13.7 56 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Ribonuclease H 61 c1i3aA_ not modelled 13.7 56 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease hii; PDBTitle: rnase hii from archaeoglobus fulgidus with cobalt hexammine2 chloride 62 c3k1qS_ not modelled 13.6 22 PDB header:virus Chain: S: PDB Molecule:vp7: protector protein (outer shell); PDBTitle: backbone model of an aquareovirus virion by cryo-electron2 microscopy and bioinformatics 63 c2hx6A_ not modelled 13.6 33 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease; PDBTitle: solution structure analysis of the phage t42 endoribonuclease regb 64 c2j8lA_ not modelled 13.6 43 PDB header:hydrolase Chain: A: PDB Molecule:coagulation factor xi; PDBTitle: fxi apple 4 domain loop-out conformation 65 c2j8jA_ not modelled 13.6 43 PDB header:hydrolase Chain: A: PDB Molecule:coagulation factor xi; PDBTitle: solution structure of the a4 domain of blood coagulation2 factor xi 66 d1k1ga_ not modelled 13.5 32 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 67 d2ldxa2 not modelled 13.5 25 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 68 c2kn6A_ not modelled 13.5 16 PDB header:apoptosis Chain: A: PDB Molecule:apoptosis-associated speck-like protein containing a card; PDBTitle: structure of full-length human asc (apoptosis-associated speck-like2 protein containing a card) 69 d2j0111 not modelled 13.4 40 Fold:L28p-like Superfamily:L28p-like Family:Ribosomal protein L28 70 d1ekea_ not modelled 13.4 67 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Ribonuclease H 71 c2h8bB_ not modelled 13.4 50 PDB header:hormone/growth factor Chain: B: PDB Molecule:insulin-like 3; PDBTitle: solution structure of insl3 72 d2axtc1 not modelled 13.3 18 Fold:Photosystem II antenna protein-like Superfamily:Photosystem II antenna protein-like Family:Photosystem II antenna protein-like 73 c2axtc_ not modelled 13.3 18 PDB header:electron transport Chain: C: PDB Molecule:photosystem ii cp43 protein; PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus 74 c2jrpA_ not modelled 13.2 44 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative cytoplasmic protein; PDBTitle: solution nmr structure of yfgj from salmonella typhimurium2 modeled with two zn+2 bound, northeast structural genomics3 consortium target str86 75 d2oara1 not modelled 13.2 14 Fold:Gated mechanosensitive channel Superfamily:Gated mechanosensitive channel Family:Gated mechanosensitive channel 76 c1sazA_ not modelled 13.2 29 PDB header:transferase Chain: A: PDB Molecule:probable butyrate kinase 2; PDBTitle: membership in the askha superfamily: enzymological2 properties and crystal structure of butyrate kinase 2 from3 thermotoga maritima 77 d2csba1 not modelled 13.1 71 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Topoisomerase V repeat domain 78 c2rejA_ not modelled 13.1 8 PDB header:choline-binding protein Chain: A: PDB Molecule:putative glycine betaine abc transporter protein; PDBTitle: abc-transporter choline binding protein in unliganded semi-2 closed conformation 79 c2yguA_ not modelled 13.0 20 PDB header:allergen Chain: A: PDB Molecule:venom allergen 2; PDBTitle: crystal structure of fire ant venom allergen, sol i 2 80 c2jo1A_ not modelled 13.0 2 PDB header:hydrolase regulator Chain: A: PDB Molecule:phospholemman; PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles 81 d2axti1 not modelled 13.0 23 Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein I, PsbI Family:PsbI-like 82 c3kioA_ not modelled 13.0 67 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease h2 subunit a; PDBTitle: mouse rnase h2 complex 83 d1l7la_ not modelled 13.0 14 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:PA-IL, galactose-binding lectin 1 84 d1m98a1 not modelled 13.0 26 Fold:Orange carotenoid protein, N-terminal domain Superfamily:Orange carotenoid protein, N-terminal domain Family:Orange carotenoid protein, N-terminal domain 85 c3g9rF_ not modelled 12.9 36 PDB header:viral protein Chain: F: PDB Molecule:fusion complex of hiv-1 envelope glycoprotein PDBTitle: structure of the hiv-1 gp41 membrane-proximal ectodomain2 region in a putative prefusion conformation 86 c2bbjB_ not modelled 12.9 15 PDB header:metal transport/membrane protein Chain: B: PDB Molecule:divalent cation transport-related protein; PDBTitle: crystal structure of the cora mg2+ transporter 87 d1uaxa_ not modelled 12.8 67 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Ribonuclease H 88 d1c9ka_ not modelled 12.8 55 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 89 c2j8jB_ not modelled 12.8 43 PDB header:hydrolase Chain: B: PDB Molecule:coagulation factor xi; PDBTitle: solution structure of the a4 domain of blood coagulation2 factor xi 90 d1uf0a_ not modelled 12.7 17 Fold:beta-Grasp (ubiquitin-like) Superfamily:Doublecortin (DC) Family:Doublecortin (DC) 91 c2p58C_ not modelled 12.7 45 PDB header:transport protein/chaperone Chain: C: PDB Molecule:putative type iii secretion protein yscg; PDBTitle: structure of the yersinia pestis type iii secretion system2 needle protein yscf in complex with its chaperones3 ysce/yscg 92 c1rr7A_ not modelled 12.6 29 PDB header:transcription Chain: A: PDB Molecule:middle operon regulator; PDBTitle: crystal structure of the middle operon regulator protein of2 bacteriophage mu 93 d1rr7a_ not modelled 12.6 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Middle operon regulator, Mor 94 d1j5pa4 not modelled 12.6 14 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 95 c3s0xB_ not modelled 12.6 14 PDB header:hydrolase Chain: B: PDB Molecule:peptidase a24b, flak domain protein; PDBTitle: the crystal structure of gxgd membrane protease flak 96 c2d0bA_ not modelled 12.6 44 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease hiii; PDBTitle: crystal structure of bst-rnase hiii in complex with mg2+ 97 c2jpmA_ not modelled 12.6 40 PDB header:antimicrobial protein Chain: A: PDB Molecule:bacteriocin lactococcin-g subunit beta; PDBTitle: lactococcin g-b in tfe 98 d1io2a_ not modelled 12.5 67 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Ribonuclease H 99 c2oarA_ not modelled 12.4 13 PDB header:membrane protein Chain: A: PDB Molecule:large-conductance mechanosensitive channel; PDBTitle: mechanosensitive channel of large conductance (mscl)