Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	T	C	I	T	K	G	I	V	T	V	S	L	T	A	I	L	L	S	C	S	S	A	W	A	A	G	K	G	G	I	G	L	A	A	T	R	L	V	Y	S	E	G	E	E	Q	I	S	L	G	V	R	N	T	S	P	D	V	P
Secondary structure
SS confidence
Disorder		?	?	?	?	?																							?	?	?	?			?										?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Y	L	I	Q	S	W	V	M	T	P	D	N	K	K	S	A	D	F	I	I	T	P	P	L	F	V	L	N	P	A	N	E	N	L	L	R	I	M	Y	I	G	A	P	L	A	K	D	R	E	T	L	F	F	T	S	V	R	A	V	P
Secondary structure
SS confidence
Disorder								?	?	?	?	?	?	?		?								?						?													?	?	?	?															?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		S	T	T	K	R	K	E	G	N	T	L	K	I	A	T	Q	S	V	I	K	L	F	W	R	P	K	G	L	A	Y	P	L	G	E	A	P	A	K	L	R	C	T	S	S	A	D	M	V	T	V	S	N	P	T	P	Y	F	I	T	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?																			?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Sequence		T	D	L	K	I	G	G	K	V	V	K	N	Q	M	I	S	P	F	D	K	Y	Q	F	S	L	P	K	G	A	K	N	S	S	V	T	Y	R	T	I	N	D	Y	G	A	E	T	P	Q	L	N	C	K	S
Secondary structure
SS confidence
Disorder						?	?	?	?	?	?	?	?								?						?	?	?	?	?	?																				?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1qun chain A Region: 31 - 230 Aligned: 194 Modelled: 200 Confidence: 100.0% Identity: 46% PDB header:chaperone/structural protein Chain: A: PDB Molecule:papd-like chaperone fimc; PDBTitle: x-ray structure of the fimc-fimh chaperone adhesin complex2 from uropathogenic e.coli Phyre2 PDB 1z9s chain A Region: 27 - 232 Aligned: 194 Modelled: 206 Confidence: 100.0% Identity: 29% PDB header:chaperone/immune system Chain: A: PDB Molecule:chaperone protein caf1m; PDBTitle: crystal structure of the native chaperone:subunit:subunit2 caf1m:caf1:caf1 complex Phyre2 PDB 2co7 chain B Region: 26 - 230 Aligned: 193 Modelled: 205 Confidence: 100.0% Identity: 31% PDB header:fibril protein Chain: B: PDB Molecule:putative fimbriae assembly chaperone; PDBTitle: salmonella enterica safa pilin in complex with the safb2 chaperone (type ii) Phyre2 PDB 1l4i chain A Region: 31 - 231 Aligned: 186 Modelled: 201 Confidence: 100.0% Identity: 46% PDB header:chaperone Chain: A: PDB Molecule:sfae protein; PDBTitle: crystal structure of the periplasmic chaperone sfae Phyre2 PDB 1qpx chain A Region: 31 - 233 Aligned: 189 Modelled: 203 Confidence: 100.0% Identity: 29% PDB header:chaperone Chain: A: PDB Molecule:papd chaperone; PDBTitle: crystal structures of self-capping papd chaperone homodimers Phyre2 PDB 3f6i chain B Region: 31 - 227 Aligned: 179 Modelled: 197 Confidence: 100.0% Identity: 26% PDB header:chaperone Chain: B: PDB Molecule:chaperone protein faee; PDBTitle: structure of the semet labeled f4 fibrial chaperone faee Phyre2 PDB 3q48 chain B Region: 33 - 227 Aligned: 172 Modelled: 179 Confidence: 100.0% Identity: 37% PDB header:chaperone Chain: B: PDB Molecule:chaperone cupb2; PDBTitle: crystal structure of pseudomonas aeruginosa cupb2 chaperone Phyre2 PDB 2co7 chain B domain 1 Region: 26 - 148 Aligned: 117 Modelled: 123 Confidence: 100.0% Identity: 35% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 1p5v chain A domain 1 Region: 25 - 148 Aligned: 112 Modelled: 124 Confidence: 100.0% Identity: 36% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 2j2z chain A domain 1 Region: 31 - 152 Aligned: 120 Modelled: 122 Confidence: 100.0% Identity: 33% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 3bwu chain C domain 1 Region: 31 - 149 Aligned: 115 Modelled: 119 Confidence: 100.0% Identity: 48% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 1l4i chain A domain 1 Region: 31 - 148 Aligned: 111 Modelled: 118 Confidence: 100.0% Identity: 46% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 3bwu chain C domain 2 Region: 151 - 230 Aligned: 79 Modelled: 80 Confidence: 99.8% Identity: 46% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 1p5v chain A domain 2 Region: 149 - 232 Aligned: 78 Modelled: 84 Confidence: 99.8% Identity: 24% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 1l4i chain A domain 2 Region: 151 - 230 Aligned: 72 Modelled: 80 Confidence: 99.8% Identity: 49% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 2co7 chain B domain 2 Region: 149 - 232 Aligned: 78 Modelled: 84 Confidence: 99.8% Identity: 24% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 2j2z chain A domain 2 Region: 153 - 233 Aligned: 78 Modelled: 75 Confidence: 99.7% Identity: 23% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 1m1s chain A Region: 29 - 127 Aligned: 90 Modelled: 98 Confidence: 97.6% Identity: 12% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: MSP-like Phyre2 PDB 1grw chain A Region: 29 - 145 Aligned: 111 Modelled: 117 Confidence: 97.2% Identity: 14% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: MSP-like Phyre2 PDB 1row chain A Region: 32 - 116 Aligned: 79 Modelled: 85 Confidence: 96.8% Identity: 10% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: MSP-like Phyre2 1 c1qunA_ 2 c1z9sA_ 3 c2co7B_ 4 c1l4iA_ 5 c1qpxA_ 6 c3f6iB_ 7 c3q48B_ 8 d2co7b1 9 d1p5va1 10 d2j2za1 11 d3bwuc1 12 d1l4ia1 13 d3bwuc2 14 d1p5va2 15 d1l4ia2 16 d2co7b2 17 d2j2za2 18 d1m1sa_ 19 d1grwa_ 20 d1rowa_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1qunA_ 100.0 46 PDB header:chaperone/structural protein Chain: A: PDB Molecule:papd-like chaperone fimc; PDBTitle: x-ray structure of the fimc-fimh chaperone adhesin complex2 from uropathogenic e.coli 2 c1z9sA_ 100.0 29 PDB header:chaperone/immune system Chain: A: PDB Molecule:chaperone protein caf1m; PDBTitle: crystal structure of the native chaperone:subunit:subunit2 caf1m:caf1:caf1 complex 3 c2co7B_ 100.0 31 PDB header:fibril protein Chain: B: PDB Molecule:putative fimbriae assembly chaperone; PDBTitle: salmonella enterica safa pilin in complex with the safb2 chaperone (type ii) 4 c1l4iA_ 100.0 46 PDB header:chaperone Chain: A: PDB Molecule:sfae protein; PDBTitle: crystal structure of the periplasmic chaperone sfae 5 c1qpxA_ 100.0 29 PDB header:chaperone Chain: A: PDB Molecule:papd chaperone; PDBTitle: crystal structures of self-capping papd chaperone homodimers 6 c3f6iB_ 100.0 26 PDB header:chaperone Chain: B: PDB Molecule:chaperone protein faee; PDBTitle: structure of the semet labeled f4 fibrial chaperone faee 7 c3q48B_ 100.0 37 PDB header:chaperone Chain: B: PDB Molecule:chaperone cupb2; PDBTitle: crystal structure of pseudomonas aeruginosa cupb2 chaperone 8 d2co7b1 100.0 35 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 9 d1p5va1 100.0 36 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 10 d2j2za1 100.0 33 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 11 d3bwuc1 100.0 48 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 12 d1l4ia1 100.0 46 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 13 d3bwuc2 99.8 46 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 14 d1p5va2 99.8 24 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 15 d1l4ia2 99.8 49 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 16 d2co7b2 99.8 24 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 17 d2j2za2 99.7 23 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 18 d1m1sa_ 97.6 12 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 19 d1grwa_ 97.2 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 20 d1rowa_ 96.8 10 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 21 d1mspa_ not modelled 96.5 10 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 22 c1z9oB_ not modelled 95.9 14 PDB header:protein binding/lipid binding protein Chain: B: PDB Molecule:vesicle-associated membrane protein-associated protein a; PDBTitle: 1.9 angstrom crystal structure of the rat vap-a msp homology domain in2 complex with the rat orp1 ffat motif 23 c2qsvA_ not modelled 94.6 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein of unknown function from porphyromonas2 gingivalis w83 24 c2e6jA_ not modelled 94.1 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hydin protein; PDBTitle: solution structure of the c-terminal papd-like domain from2 human hydin protein 25 c3qisA_ not modelled 91.1 14 PDB header:hydrolase/protein binding Chain: A: PDB Molecule:inositol polyphosphate 5-phosphatase ocrl-1; PDBTitle: recognition of the f&h motif by the lowe syndrome protein ocrl 26 d2vzsa2 not modelled 91.0 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain 27 c2ys4A_ not modelled 90.3 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hydrocephalus-inducing protein homolog; PDBTitle: solution structure of the n-terminal papd-like domain of2 hydin protein from human 28 d1wica_ not modelled 89.9 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 29 c3qbtH_ not modelled 83.5 13 PDB header:protein transport/hydrolase Chain: H: PDB Molecule:inositol polyphosphate 5-phosphatase ocrl-1; PDBTitle: crystal structure of ocrl1 540-678 in complex with rab8a:gppnhp 30 d1ejxb_ not modelled 79.2 14 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 31 d4ubpb_ not modelled 78.3 22 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 32 c3ac0B_ not modelled 77.3 16 PDB header:hydrolase Chain: B: PDB Molecule:beta-glucosidase i; PDBTitle: crystal structure of beta-glucosidase from kluyveromyces marxianus in2 complex with glucose 33 c3h6aB_ not modelled 76.4 10 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-4; PDBTitle: structure of the calx-beta domain of integrin beta42 crystallized in the presence of calcium 34 d2dpka1 not modelled 76.4 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:CalX-like Family:CalX-beta domain 35 d1e9ya1 not modelled 73.3 26 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 36 c2x41A_ not modelled 71.0 11 PDB header:hydrolase Chain: A: PDB Molecule:beta-glucosidase; PDBTitle: structure of beta-glucosidase 3b from thermotoga neapolitana2 in complex with glucose 37 c3qgaD_ not modelled 69.9 16 PDB header:hydrolase Chain: D: PDB Molecule:fusion of urease beta and gamma subunits; PDBTitle: 3.0 a model of iron containing urease urea2b2 from helicobacter2 mustelae 38 c1e9zA_ not modelled 66.2 26 PDB header:hydrolase Chain: A: PDB Molecule:urease subunit alpha; PDBTitle: crystal structure of helicobacter pylori urease 39 c3o0lB_ not modelled 62.7 9 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a pfam duf1425 family member (shew_1734) from2 shewanella sp. pv-4 at 1.81 a resolution 40 c3ginB_ not modelled 62.0 11 PDB header:metal binding protein Chain: B: PDB Molecule:sodium/calcium exchanger 1; PDBTitle: crystal structure of e454k-cbd1 41 d1aoza2 not modelled 57.9 13 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 42 d1e42a1 not modelled 56.2 17 Fold:Immunoglobulin-like beta-sandwich Superfamily:Clathrin adaptor appendage domain Family:Alpha-adaptin ear subdomain-like 43 c3eujB_ not modelled 52.1 18 PDB header:cell cycle Chain: B: PDB Molecule:chromosome partition protein mukf; PDBTitle: crystal structure of muke-mukf(residues 292-443)-mukb(head2 domain)-atpgammas complex, symmetric dimer 44 d1hfua2 not modelled 50.5 13 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 45 c2qvkA_ not modelled 48.8 17 PDB header:metal binding protein Chain: A: PDB Molecule:sodium/calcium exchanger 1; PDBTitle: the second ca2+-binding domain of the na+-ca2+ exchanger is2 essential for regulation: crystal structures and3 mutational analysis 46 d1yq2a1 not modelled 48.4 20 Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain 47 c3rb7E_ not modelled 48.2 13 PDB header:metal binding protein Chain: E: PDB Molecule:na/ca exchange protein; PDBTitle: crystal structure of cbd12 from calx1.2 48 d1k3ra1 not modelled 46.7 18 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Hypothetical protein MTH1 (MT0001), insert domain 49 c1e42A_ not modelled 42.6 16 PDB header:endocytosis Chain: A: PDB Molecule:ap-2 complex subunit beta; PDBTitle: beta2-adaptin appendage domain, from clathrin adaptor ap2 50 c2je8B_ not modelled 39.6 12 PDB header:hydrolase Chain: B: PDB Molecule:beta-mannosidase; PDBTitle: structure of a beta-mannosidase from bacteroides2 thetaiotaomicron 51 c3jt0B_ not modelled 38.1 10 PDB header:structural protein Chain: B: PDB Molecule:lamin-b1; PDBTitle: crystal structure of the c-terminal fragment (426-558)2 lamin-b1 from homo sapiens, northeast structural genomics3 consortium target hr5546a 52 c3butA_ not modelled 36.9 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein af_0446; PDBTitle: crystal structure of protein af_0446 from archaeoglobus fulgidus 53 c3e9uA_ not modelled 36.3 10 PDB header:membrane protein Chain: A: PDB Molecule:na/ca exchange protein; PDBTitle: crystal structure of calx cbd2 domain 54 c1yycA_ not modelled 34.8 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative late embryogenesis abundant protein; PDBTitle: solution structure of a putative late embryogenesis2 abundant (lea) protein at2g46140.1 55 d2fwua1 not modelled 34.1 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:CalX-like Family:CalX-beta domain 56 c3e9tD_ not modelled 32.6 10 PDB header:membrane protein Chain: D: PDB Molecule:na/ca exchange protein; PDBTitle: crystal structure of apo-form calx cbd1 domain 57 d1kyaa2 not modelled 29.5 10 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 58 d2huha1 not modelled 29.5 22 Fold:C2 domain-like Superfamily:Smr-associated domain-like Family:Smr-associated domain 59 d1jz8a2 not modelled 28.5 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain 60 d1gyca2 not modelled 25.3 9 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 61 c1l5gA_ not modelled 24.9 10 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha v; PDBTitle: crystal structure of the extracellular segment of integrin avb3 in2 complex with an arg-gly-asp ligand 62 d1xo8a_ not modelled 22.4 20 Fold:Immunoglobulin-like beta-sandwich Superfamily:LEA14-like Family:LEA14-like 63 d1r7aa1 not modelled 21.6 23 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain 64 d1ufga_ not modelled 20.6 20 Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain 65 d1w8oa1 not modelled 17.8 10 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 66 c2lllA_ not modelled 15.5 12 PDB header:structural protein Chain: A: PDB Molecule:lamin-b2; PDBTitle: solution nmr structure of c-terminal globular domain of human lamin-2 b2, northeast structural genomics consortium target hr8546a 67 d1ifra_ not modelled 14.8 20 Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain 68 c2qziA_ not modelled 14.1 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of a conserved protein of unknown function from2 streptococcus thermophilus lmg 18311. 69 c2vzvB_ not modelled 14.0 17 PDB header:hydrolase Chain: B: PDB Molecule:exo-beta-d-glucosaminidase; PDBTitle: substrate complex of amycolatopsis orientalis exo-2 chitosanase csxa e541a with chitosan 70 c1wkwB_ not modelled 13.9 38 PDB header:translation/protein binding Chain: B: PDB Molecule:eukaryotic translation initiation factor 4e PDBTitle: crystal structure of the ternary complex of eif4e-m7gpppa-2 4ebp1 peptide 71 d1hmja_ not modelled 11.3 3 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 72 c2f1eA_ not modelled 11.2 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein apag; PDBTitle: solution structure of apag protein 73 c3i3fB_ not modelled 11.1 16 PDB header:unknown function Chain: B: PDB Molecule:hypothetical protein; PDBTitle: hypothetical protein from giardia lamblia gl50803_14299 74 c3of6D_ not modelled 8.8 12 PDB header:immune system Chain: D: PDB Molecule:pre t-cell antigen receptor alpha; PDBTitle: human pre-t cell receptor crystal structure 75 c2zooA_ not modelled 8.6 17 PDB header:oxidoreductase Chain: A: PDB Molecule:probable nitrite reductase; PDBTitle: crystal structure of nitrite reductase from pseudoalteromonas2 haloplanktis tac125 76 d1ivta_ not modelled 8.2 20 Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain 77 c1zpuE_ not modelled 7.9 17 PDB header:oxidoreductase Chain: E: PDB Molecule:iron transport multicopper oxidase fet3; PDBTitle: crystal structure of fet3p, a multicopper oxidase that functions in2 iron import 78 c2phgB_ not modelled 7.8 50 PDB header:transcription Chain: B: PDB Molecule:alpha trans-inducing protein; PDBTitle: model for vp16 binding to tfiib 79 c2pheC_ not modelled 7.7 50 PDB header:transcription Chain: C: PDB Molecule:alpha trans-inducing protein; PDBTitle: model for vp16 binding to pc4 80 d1ty0a1 not modelled 7.7 50 Fold:OB-fold Superfamily:Bacterial enterotoxins Family:Superantigen toxins, N-terminal domain 81 c2ph7B_ not modelled 7.4 40 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein af_2093; PDBTitle: crystal structure of af2093 from archaeoglobus fulgidus 82 d1tzaa_ not modelled 6.9 23 Fold:Immunoglobulin-like beta-sandwich Superfamily:ApaG-like Family:ApaG-like 83 d1eu3a1 not modelled 6.4 24 Fold:OB-fold Superfamily:Bacterial enterotoxins Family:Superantigen toxins, N-terminal domain 84 c1hymB_ not modelled 5.5 27 PDB header:hydrolase (serine proteinase) Chain: B: PDB Molecule:hydrolyzed cucurbita maxima trypsin inhibitor v; PDBTitle: hydrolyzed trypsin inhibitor (cmti-v, minimized average nmr2 structure) 85 c2b9kA_ not modelled 5.5 13 PDB header:antibiotic Chain: A: PDB Molecule:antimicrobial peptide lci; PDBTitle: solution structure of lci, an amp from bacillus subtilis 86 c2l02B_ not modelled 5.4 8 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of protein bt2368 from bacteroides2 thetaiotaomicron, northeast structural genomics consortium target3 btr375 87 c1pzdA_ not modelled 5.4 10 PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:coatomer gamma subunit; PDBTitle: structural identification of a conserved appendage domain2 in the carboxyl-terminus of the copi gamma-subunit. 88 c1egpB_ not modelled 5.3 22 PDB header:proteinase inhibitor Chain: B: PDB Molecule:eglin-c; PDBTitle: proteinase inhibitor eglin c with hydrolysed reactive center 89 d1v7wa1 not modelled 5.2 10 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Glycosyltransferase family 36 C-terminal domain 90 d1pkoa_ not modelled 5.1 18 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0