Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP45578
DateThu Jan 5 12:03:25 GMT 2012
Unique Job ID3e2bfb4332893072

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1j6wa_
Top template information
Fold:LuxS/MPP-like metallohydrolase
Superfamily:LuxS/MPP-like metallohydrolase
Family:Autoinducer-2 production protein LuxS
Confidence and coverage
Confidence:100.0% Coverage: 94%
160 residues ( 94% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLF
Secondary structure 



















SS confidence 



























































Disorder  ???????















???????














?
?????







Disorder confidence 



























































 
   .........70.........80.........90.........100.........110.........120
Sequence  AGFMRNHLNGNGVEIIDISPMGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQI
Secondary structure 

























SS confidence 



























































Disorder 



























































Disorder confidence 



























































 
   .........130.........140.........150.........160.........170.
Sequence  PELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELALPKEKLQELHI
Secondary structure 






















SS confidence 


















































Disorder 





























?


?











????
Disorder confidence 


















































 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1j6w chain A

3D model

Region: 3 - 162
Aligned: 160
Modelled: 160
Confidence: 100.0%
Identity: 66%
Fold: LuxS/MPP-like metallohydrolase
Superfamily: LuxS/MPP-like metallohydrolase
Family: Autoinducer-2 production protein LuxS

Phyre2

PDB 1j6x chain A

3D model

Region: 3 - 152
Aligned: 143
Modelled: 150
Confidence: 100.0%
Identity: 37%
Fold: LuxS/MPP-like metallohydrolase
Superfamily: LuxS/MPP-like metallohydrolase
Family: Autoinducer-2 production protein LuxS

Phyre2

PDB 1vje chain A

3D model

Region: 5 - 161
Aligned: 150
Modelled: 155
Confidence: 100.0%
Identity: 46%
Fold: LuxS/MPP-like metallohydrolase
Superfamily: LuxS/MPP-like metallohydrolase
Family: Autoinducer-2 production protein LuxS

Phyre2

PDB 1j98 chain A

3D model

Region: 4 - 157
Aligned: 150
Modelled: 154
Confidence: 100.0%
Identity: 35%
Fold: LuxS/MPP-like metallohydrolase
Superfamily: LuxS/MPP-like metallohydrolase
Family: Autoinducer-2 production protein LuxS

Phyre2

PDB 1k1s chain A domain 1

3D model

Region: 93 - 159
Aligned: 63
Modelled: 67
Confidence: 76.4%
Identity: 19%
Fold: Lesion bypass DNA polymerase (Y-family), little finger domain
Superfamily: Lesion bypass DNA polymerase (Y-family), little finger domain
Family: Lesion bypass DNA polymerase (Y-family), little finger domain

Phyre2

PDB 3gqe chain A

3D model

Region: 14 - 170
Aligned: 148
Modelled: 149
Confidence: 75.6%
Identity: 13%
PDB header:viral protein
Chain: A: PDB Molecule:non-structural protein 3;
PDBTitle: crystal structure of macro domain of venezuelan equine encephalitis2 virus

Phyre2

PDB 1nyr chain A domain 3

3D model

Region: 54 - 113
Aligned: 56
Modelled: 60
Confidence: 69.1%
Identity: 21%
Fold: RRF/tRNA synthetase additional domain-like
Superfamily: ThrRS/AlaRS common domain
Family: Threonyl-tRNA synthetase (ThrRS), second 'additional' domain

Phyre2

PDB 1tke chain A domain 2

3D model

Region: 54 - 113
Aligned: 56
Modelled: 60
Confidence: 63.5%
Identity: 25%
Fold: RRF/tRNA synthetase additional domain-like
Superfamily: ThrRS/AlaRS common domain
Family: Threonyl-tRNA synthetase (ThrRS), second 'additional' domain

Phyre2

PDB 3k2g chain A

3D model

Region: 60 - 149
Aligned: 83
Modelled: 85
Confidence: 61.8%
Identity: 16%
PDB header:resiniferatoxin binding protein
Chain: A: PDB Molecule:resiniferatoxin-binding, phosphotriesterase-
PDBTitle: crystal structure of a resiniferatoxin-binding protein from2 rhodobacter sphaeroides

Phyre2

PDB 1tke chain A

3D model

Region: 54 - 113
Aligned: 56
Modelled: 60
Confidence: 56.7%
Identity: 20%
PDB header:ligase
Chain: A: PDB Molecule:threonyl-trna synthetase;
PDBTitle: crystal structure of the editing domain of threonyl-trna2 synthetase complexed with serine

Phyre2

PDB 1m5h chain A domain 2

3D model

Region: 88 - 131
Aligned: 38
Modelled: 44
Confidence: 49.4%
Identity: 18%
Fold: Ferredoxin-like
Superfamily: Formylmethanofuran:tetrahydromethanopterin formyltransferase
Family: Formylmethanofuran:tetrahydromethanopterin formyltransferase

Phyre2

PDB 1m5s chain A domain 2

3D model

Region: 88 - 131
Aligned: 38
Modelled: 44
Confidence: 48.0%
Identity: 26%
Fold: Ferredoxin-like
Superfamily: Formylmethanofuran:tetrahydromethanopterin formyltransferase
Family: Formylmethanofuran:tetrahydromethanopterin formyltransferase

Phyre2

PDB 1nyq chain A

3D model

Region: 54 - 113
Aligned: 55
Modelled: 60
Confidence: 44.0%
Identity: 20%
PDB header:ligase
Chain: A: PDB Molecule:threonyl-trna synthetase 1;
PDBTitle: structure of staphylococcus aureus threonyl-trna synthetase2 complexed with an analogue of threonyl adenylate

Phyre2

PDB 1ryp chain 1

3D model

Region: 74 - 154
Aligned: 75
Modelled: 76
Confidence: 43.2%
Identity: 11%
Fold: Ntn hydrolase-like
Superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family: Proteasome subunits

Phyre2

PDB 1ftr chain A domain 2

3D model

Region: 88 - 131
Aligned: 38
Modelled: 44
Confidence: 42.8%
Identity: 24%
Fold: Ferredoxin-like
Superfamily: Formylmethanofuran:tetrahydromethanopterin formyltransferase
Family: Formylmethanofuran:tetrahydromethanopterin formyltransferase

Phyre2

PDB 1fcd chain A domain 2

3D model

Region: 28 - 82
Aligned: 50
Modelled: 55
Confidence: 40.8%
Identity: 20%
Fold: FAD/NAD(P)-binding domain
Superfamily: FAD/NAD(P)-binding domain
Family: FAD/NAD-linked reductases, N-terminal and central domains

Phyre2

PDB 2rp4 chain C

3D model

Region: 23 - 66
Aligned: 40
Modelled: 44
Confidence: 40.2%
Identity: 30%
PDB header:transcription
Chain: C: PDB Molecule:transcription factor p53;
PDBTitle: solution structure of the oligomerization domain in dmp53

Phyre2

PDB 1m5s chain C

3D model

Region: 88 - 131
Aligned: 38
Modelled: 44
Confidence: 39.4%
Identity: 26%
PDB header:transferase
Chain: C: PDB Molecule:formylmethanofuran--tetrahydromethanopterin
PDBTitle: formylmethanofuran:tetrahydromethanopterin2 fromyltransferase from methanosarcina barkeri

Phyre2

PDB 3kew chain A

3D model

Region: 53 - 113
Aligned: 56
Modelled: 61
Confidence: 38.7%
Identity: 20%
PDB header:transferase
Chain: A: PDB Molecule:dhha1 domain protein;
PDBTitle: crystal structure of probable alanyl-trna-synthase from clostridium2 perfringens

Phyre2

PDB 2kvo chain A

3D model

Region: 1 - 45
Aligned: 40
Modelled: 41
Confidence: 38.0%
Identity: 28%
PDB header:photosynthesis
Chain: A: PDB Molecule:photosystem ii reaction center psb28 protein;
PDBTitle: solution nmr structure of photosystem ii reaction center psb28 protein2 from synechocystis sp.(strain pcc 6803), northeast structural3 genomics consortium target sgr171

Phyre2
1

d1j6wa_
2

d1j6xa_
3

d1vjea_
4

d1j98a_
5

d1k1sa1
6

c3gqeA_
7

d1nyra3
8

d1tkea2
9

c3k2gA_
10

c1tkeA_
11

d1m5ha2
12

d1m5sa2
13

c1nyqA_
14

d1ryp1_
15

d1ftra2
16

d1fcda2
17

c2rp4C_
18

c1m5sC_
19

c3kewA_
20

c2kvoA_
21



22



23



24



25



26



27



28



29



30



31



32



33



34



35



36



37



38



39



40



41



42



43



44



45



46



47



48



49



50



51



52



53



54



55



56



57



58



59



60



61



62



63



64



65



66



67



68



69



70



71



72



73



74



75



76



77



78



79



80



81



82



83



84



85



86



87



88



89



90



91



92



93



94



95



96



97



98



99






Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1j6wa_



100.0 66 Fold:LuxS/MPP-like metallohydrolase
Superfamily:LuxS/MPP-like metallohydrolase
Family:Autoinducer-2 production protein LuxS
2d1j6xa_



100.0 37 Fold:LuxS/MPP-like metallohydrolase
Superfamily:LuxS/MPP-like metallohydrolase
Family:Autoinducer-2 production protein LuxS
3d1vjea_



100.0 46 Fold:LuxS/MPP-like metallohydrolase
Superfamily:LuxS/MPP-like metallohydrolase
Family:Autoinducer-2 production protein LuxS
4d1j98a_



100.0 35 Fold:LuxS/MPP-like metallohydrolase
Superfamily:LuxS/MPP-like metallohydrolase
Family:Autoinducer-2 production protein LuxS
5d1k1sa1



76.4 19 Fold:Lesion bypass DNA polymerase (Y-family), little finger domain
Superfamily:Lesion bypass DNA polymerase (Y-family), little finger domain
Family:Lesion bypass DNA polymerase (Y-family), little finger domain
6c3gqeA_



75.6 13 PDB header:viral protein
Chain: A: PDB Molecule:non-structural protein 3;
PDBTitle: crystal structure of macro domain of venezuelan equine encephalitis2 virus
7d1nyra3



69.1 21 Fold:RRF/tRNA synthetase additional domain-like
Superfamily:ThrRS/AlaRS common domain
Family:Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
8d1tkea2



63.5 25 Fold:RRF/tRNA synthetase additional domain-like
Superfamily:ThrRS/AlaRS common domain
Family:Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
9c3k2gA_



61.8 16 PDB header:resiniferatoxin binding protein
Chain: A: PDB Molecule:resiniferatoxin-binding, phosphotriesterase-
PDBTitle: crystal structure of a resiniferatoxin-binding protein from2 rhodobacter sphaeroides
10c1tkeA_



56.7 20 PDB header:ligase
Chain: A: PDB Molecule:threonyl-trna synthetase;
PDBTitle: crystal structure of the editing domain of threonyl-trna2 synthetase complexed with serine
11d1m5ha2



49.4 18 Fold:Ferredoxin-like
Superfamily:Formylmethanofuran:tetrahydromethanopterin formyltransferase
Family:Formylmethanofuran:tetrahydromethanopterin formyltransferase
12d1m5sa2



48.0 26 Fold:Ferredoxin-like
Superfamily:Formylmethanofuran:tetrahydromethanopterin formyltransferase
Family:Formylmethanofuran:tetrahydromethanopterin formyltransferase
13c1nyqA_



44.0 20 PDB header:ligase
Chain: A: PDB Molecule:threonyl-trna synthetase 1;
PDBTitle: structure of staphylococcus aureus threonyl-trna synthetase2 complexed with an analogue of threonyl adenylate
14d1ryp1_



43.2 11 Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Proteasome subunits
15d1ftra2



42.8 24 Fold:Ferredoxin-like
Superfamily:Formylmethanofuran:tetrahydromethanopterin formyltransferase
Family:Formylmethanofuran:tetrahydromethanopterin formyltransferase
16d1fcda2



40.8 20 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
17c2rp4C_



40.2 30 PDB header:transcription
Chain: C: PDB Molecule:transcription factor p53;
PDBTitle: solution structure of the oligomerization domain in dmp53
18c1m5sC_



39.4 26 PDB header:transferase
Chain: C: PDB Molecule:formylmethanofuran--tetrahydromethanopterin
PDBTitle: formylmethanofuran:tetrahydromethanopterin2 fromyltransferase from methanosarcina barkeri
19c3kewA_



38.7 20 PDB header:transferase
Chain: A: PDB Molecule:dhha1 domain protein;
PDBTitle: crystal structure of probable alanyl-trna-synthase from clostridium2 perfringens
20c2kvoA_



38.0 28 PDB header:photosynthesis
Chain: A: PDB Molecule:photosystem ii reaction center psb28 protein;
PDBTitle: solution nmr structure of photosystem ii reaction center psb28 protein2 from synechocystis sp.(strain pcc 6803), northeast structural3 genomics consortium target sgr171
21c1m5hF_



not modelled 37.2 18 PDB header:transferase
Chain: F: PDB Molecule:formylmethanofuran--tetrahydromethanopterin
PDBTitle: formylmethanofuran:tetrahydromethanopterin2 formyltransferase from archaeoglobus fulgidus
22c2fhjD_



not modelled 37.0 24 PDB header:transferase
Chain: D: PDB Molecule:formylmethanofuran--tetrahydromethanopterin
PDBTitle: crystal structure of formylmethanofuran:2 tetrahydromethanopterin formyltransferase in complex with3 its coenzymes
23d1hk8a_



not modelled 34.1 67 Fold:PFL-like glycyl radical enzymes
Superfamily:PFL-like glycyl radical enzymes
Family:Class III anaerobic ribonucleotide reductase NRDD subunit
24c1hk8A_



not modelled 34.1 67 PDB header:oxidoreductase
Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase;
PDBTitle: structural basis for allosteric substrate specificity2 regulation in class iii ribonucleotide reductases:3 nrdd in complex with dgtp
25c2kdnA_



not modelled 32.1 20 PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein pfe0790c;
PDBTitle: solution structure of pfe0790c, a putative bola-like2 protein from the protozoan parasite plasmodium falciparum.
26d3bvua1



not modelled 31.8 12 Fold:immunoglobulin/albumin-binding domain-like
Superfamily:Families 57/38 glycoside transferase middle domain
Family:alpha-mannosidase, domain 2
27d1p42a1



not modelled 31.3 21 Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC
28c3ol0C_



not modelled 30.9 43 PDB header:de novo protein
Chain: C: PDB Molecule:de novo designed monomer trefoil-fold sub-domain which
PDBTitle: crystal structure of monofoil-4p homo-trimer: de novo designed monomer2 trefoil-fold sub-domain which forms homo-trimer assembly
29d1v9ja_



not modelled 24.8 23 Fold:Alpha-lytic protease prodomain-like
Superfamily:BolA-like
Family:BolA-like
30d1v4pa_



not modelled 24.4 15 Fold:RRF/tRNA synthetase additional domain-like
Superfamily:ThrRS/AlaRS common domain
Family:AlaX-like
31c2go4A_



not modelled 23.4 20 PDB header:hydrolase
Chain: A: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine
PDBTitle: crystal structure of aquifex aeolicus lpxc complexed with tu-514
32c3nzkB_



not modelled 19.3 33 PDB header:hydrolase
Chain: B: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine
PDBTitle: structure of lpxc from yersinia enterocolitica complexed with chir0902 inhibitor
33c2vesA_



not modelled 19.3 36 PDB header:hydrolase
Chain: A: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine
PDBTitle: crystal structure of lpxc from pseudomonas aeruginosa2 complexed with the potent bb-78485 inhibitor
34d1vlia1



not modelled 18.8 6 Fold:beta-clip
Superfamily:AFP III-like domain
Family:AFP III-like domain
35d1qkia1



not modelled 18.3 11 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
36d2e1ba2



not modelled 17.7 18 Fold:RRF/tRNA synthetase additional domain-like
Superfamily:ThrRS/AlaRS common domain
Family:AlaX-like
37c3jtzA_



not modelled 17.4 27 PDB header:dna binding protein
Chain: A: PDB Molecule:integrase;
PDBTitle: structure of the arm-type binding domain of hpi integrase
38d1r5pa_



not modelled 16.9 17 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:KaiB-like
39c3p5rB_



not modelled 16.5 17 PDB header:lyase
Chain: B: PDB Molecule:taxadiene synthase;
PDBTitle: crystal structure of taxadiene synthase from pacific yew (taxus2 brevifolia) in complex with mg2+ and 2-fluorogeranylgeranyl3 diphosphate
40d1vg0a2



not modelled 16.4 14 Fold:FAD-linked reductases, C-terminal domain
Superfamily:FAD-linked reductases, C-terminal domain
Family:GDI-like
41d1ppja1



not modelled 16.3 13 Fold:LuxS/MPP-like metallohydrolase
Superfamily:LuxS/MPP-like metallohydrolase
Family:MPP-like
42c3ju0A_



not modelled 15.9 23 PDB header:dna binding protein
Chain: A: PDB Molecule:phage integrase;
PDBTitle: structure of the arm-type binding domain of hai7 integrase
43c2wyhA_



not modelled 15.7 12 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-mannosidase;
PDBTitle: structure of the streptococcus pyogenes family gh38 alpha-2 mannosidase
44c2dj9A_



not modelled 15.3 83 PDB header:cytokine
Chain: A: PDB Molecule:growth-blocking peptide;
PDBTitle: solution structure of growth-blocking peptide of the2 cabbage armyworm, mamestra brassicae
45c3fwcO_



not modelled 15.1 21 PDB header:cell cycle, transcription
Chain: O: PDB Molecule:protein sus1;
PDBTitle: sac3:sus1:cdc31 complex
46c1qf6A_



not modelled 15.0 20 PDB header:ligase/rna
Chain: A: PDB Molecule:threonyl-trna synthetase;
PDBTitle: structure of e. coli threonyl-trna synthetase complexed with its2 cognate trna
47d2zdra1



not modelled 14.6 17 Fold:beta-clip
Superfamily:AFP III-like domain
Family:AFP III-like domain
48d1hr6b1



not modelled 14.4 13 Fold:LuxS/MPP-like metallohydrolase
Superfamily:LuxS/MPP-like metallohydrolase
Family:MPP-like
49c2kvtA_



not modelled 14.4 17 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein yaia;
PDBTitle: solution nmr structure of yaia from escherichia eoli. northeast2 structural genomics target er244
50d3eeqa1



not modelled 14.1 13 Fold:CobE/GbiG C-terminal domain-like
Superfamily:CobE/GbiG C-terminal domain-like
Family:CobE/GbiG C-terminal domain-like
51d2fgea4



not modelled 14.1 23 Fold:LuxS/MPP-like metallohydrolase
Superfamily:LuxS/MPP-like metallohydrolase
Family:MPP-like
52d1xg0b_



not modelled 14.0 38 Fold:Non-globular alpha+beta subunits of globular proteins
Superfamily:Non-globular alpha+beta subunits of globular proteins
Family:Phycoerythrin 545 alpha-subunits
53c3ogfA_



not modelled 14.0 33 PDB header:de novo protein
Chain: A: PDB Molecule:de novo designed dimeric trefoil-fold sub-domain which
PDBTitle: crystal structure of difoil-4p homo-trimer: de novo designed dimeric2 trefoil-fold sub-domain which forms homo-trimer assembly
54d1q5qa_



not modelled 13.0 19 Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Proteasome subunits
55d1vp8a_



not modelled 12.7 23 Fold:Pyruvate kinase C-terminal domain-like
Superfamily:PK C-terminal domain-like
Family:MTH1675-like
56d1xg0a_



not modelled 12.5 38 Fold:Non-globular alpha+beta subunits of globular proteins
Superfamily:Non-globular alpha+beta subunits of globular proteins
Family:Phycoerythrin 545 alpha-subunits
57d1bcca1



not modelled 12.4 15 Fold:LuxS/MPP-like metallohydrolase
Superfamily:LuxS/MPP-like metallohydrolase
Family:MPP-like
58c2pmfA_



not modelled 11.8 32 PDB header:ligase
Chain: A: PDB Molecule:glycyl-trna synthetase;
PDBTitle: the crystal structure of a human glycyl-trna synthetase mutant
59d3by5a1



not modelled 11.8 35 Fold:CobE/GbiG C-terminal domain-like
Superfamily:CobE/GbiG C-terminal domain-like
Family:CobE/GbiG C-terminal domain-like
60c3by5A_



not modelled 11.8 35 PDB header:biosynthetic protein
Chain: A: PDB Molecule:cobalamin biosynthesis protein;
PDBTitle: crystal structure of cobalamin biosynthesis protein chig from2 agrobacterium tumefaciens str. c58
61c3siiA_



not modelled 11.8 20 PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:poly(adp-ribose) glycohydrolase;
PDBTitle: the x-ray crystal structure of poly(adp-ribose) glycohydrolase bound2 to the inhibitor adp-hpd from thermomonospora curvata
62c1irrA_



not modelled 11.5 83 PDB header:cytokine
Chain: A: PDB Molecule:paralytic peptide;
PDBTitle: solution structure of paralytic peptide of the silkworm,2 bombyx mori
63c1wsuA_



not modelled 11.4 10 PDB header:translation/rna
Chain: A: PDB Molecule:selenocysteine-specific elongation factor;
PDBTitle: c-terminal domain of elongation factor selb complexed with2 secis rna
64c1v28A_



not modelled 11.4 83 PDB header:toxin
Chain: A: PDB Molecule:paralytic peptide;
PDBTitle: solution structure of paralytic peptide of the wild2 silkmoth, antheraea yamamai
65d1ivza_



not modelled 11.3 15 Fold:Ferredoxin-like
Superfamily:SEA domain
Family:SEA domain
66c2djcA_



not modelled 11.3 67 PDB header:cytokine
Chain: A: PDB Molecule:growth-blocking peptide;
PDBTitle: solution structure of growth-blocking peptide of the2 tobacco cutworm, spodoptera litura
67c3hbwA_



not modelled 11.0 25 PDB header:hormone
Chain: A: PDB Molecule:fibroblast growth factor 13;
PDBTitle: crystal structure of human fibroblast growth factor2 homologous factor 2a (fhf2a), also referred to as3 fibroblast growth factor 13a (fgf13a)
68d2w6ka1



not modelled 10.5 18 Fold:CobE/GbiG C-terminal domain-like
Superfamily:CobE/GbiG C-terminal domain-like
Family:CobE/GbiG C-terminal domain-like
69c1xuzA_



not modelled 10.2 15 PDB header:biosynthetic protein
Chain: A: PDB Molecule:polysialic acid capsule biosynthesis protein siac;
PDBTitle: crystal structure analysis of sialic acid synthase (neub)from2 neisseria meningitidis, bound to mn2+, phosphoenolpyruvate, and n-3 acetyl mannosaminitol
70c1vliA_



not modelled 10.1 13 PDB header:biosynthetic protein
Chain: A: PDB Molecule:spore coat polysaccharide biosynthesis protein spse;
PDBTitle: crystal structure of spore coat polysaccharide biosynthesis protein2 spse (bsu37870) from bacillus subtilis at 2.38 a resolution
71d1q1ua_



not modelled 10.0 8 Fold:beta-Trefoil
Superfamily:Cytokine
Family:Fibroblast growth factors (FGF)
72c3o3nB_



not modelled 9.7 10 PDB header:lyase
Chain: B: PDB Molecule:beta-subunit 2-hydroxyacyl-coa dehydratase;
PDBTitle: (r)-2-hydroxyisocaproyl-coa dehydratase in complex with its substrate2 (r)-2-hydroxyisocaproyl-coa
73d1qqla_



not modelled 9.5 33 Fold:beta-Trefoil
Superfamily:Cytokine
Family:Fibroblast growth factors (FGF)
74d1qqka_



not modelled 9.3 33 Fold:beta-Trefoil
Superfamily:Cytokine
Family:Fibroblast growth factors (FGF)
75c2q7aA_



not modelled 8.9 33 PDB header:heme binding protein
Chain: A: PDB Molecule:cell surface heme-binding protein;
PDBTitle: crystal structure of the cell surface heme transfer protein shp
76c1hrlA_



not modelled 8.8 67 PDB header:toxin
Chain: A: PDB Molecule:paralytic peptide i;
PDBTitle: structure of a paralytic peptide from an insect, manduca2 sexta
77d1osce_



not modelled 8.7 29 Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:Divalent ion tolerance proteins CutA (CutA1)
78d1su7a_



not modelled 8.6 17 Fold:Prismane protein-like
Superfamily:Prismane protein-like
Family:Carbon monoxide dehydrogenase
79c2piaA_



not modelled 8.4 43 PDB header:reductase
Chain: A: PDB Molecule:phthalate dioxygenase reductase;
PDBTitle: phthalate dioxygenase reductase: a modular structure for2 electron transfer from pyridine nucleotides to [2fe-2s]
80d1musa_



not modelled 8.4 14 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Transposase inhibitor (Tn5 transposase)
81c3h20A_



not modelled 8.1 17 PDB header:replication
Chain: A: PDB Molecule:replication protein b;
PDBTitle: crystal structure of primase repb'
82c2yutA_



not modelled 8.0 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative short-chain oxidoreductase;
PDBTitle: crystal structure of putative short-chain oxidoreductase tthb094 from2 thermus thermophilus hb8
83d1kr4a_



not modelled 7.6 29 Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:Divalent ion tolerance proteins CutA (CutA1)
84c3lmaC_



not modelled 7.6 19 PDB header:membrane protein
Chain: C: PDB Molecule:stage v sporulation protein ad (spovad);
PDBTitle: crystal structure of the stage v sporulation protein ad2 (spovad) from bacillus licheniformis. northeast structural3 genomics consortium target bir6.
85c1f0cB_



not modelled 7.4 41 PDB header:viral protein
Chain: B: PDB Molecule:ice inhibitor;
PDBTitle: structure of the viral serpin crma
86c3lvtA_



not modelled 7.4 15 PDB header:hydrolase
Chain: A: PDB Molecule:glycosyl hydrolase, family 38;
PDBTitle: the crystal structure of a protein in the glycosyl hydrolase2 family 38 from enterococcus faecalis to 2.55a
87c2wk1A_



not modelled 7.4 19 PDB header:transferase
Chain: A: PDB Molecule:novp;
PDBTitle: structure of the o-methyltransferase novp
88c3osuA_



not modelled 7.3 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:3-oxoacyl-[acyl-carrier-protein] reductase;
PDBTitle: crystal structure of the 3-oxoacyl-acyl carrier protein reductase,2 fabg, from staphylococcus aureus
89c2dgdD_



not modelled 7.0 19 PDB header:lyase
Chain: D: PDB Molecule:223aa long hypothetical arylmalonate decarboxylase;
PDBTitle: crystal structure of st0656, a function unknown protein from2 sulfolobus tokodaii
90c2zfhA_



not modelled 7.0 29 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:cuta;
PDBTitle: crystal structure of putative cuta1 from homo sapiens at 2.05a2 resolution
91d1rypl_



not modelled 6.8 10 Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Proteasome subunits
92d1p1la_



not modelled 6.7 47 Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:Divalent ion tolerance proteins CutA (CutA1)
93d1nzaa_



not modelled 6.7 29 Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:Divalent ion tolerance proteins CutA (CutA1)
94d1ukua_



not modelled 6.6 12 Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:Divalent ion tolerance proteins CutA (CutA1)
95c2e7vA_



not modelled 6.5 7 PDB header:hydrolase
Chain: A: PDB Molecule:transmembrane protease;
PDBTitle: crystal structure of sea domain of transmembrane protease2 from mus musculus
96d2nxca1



not modelled 6.5 22 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Ribosomal protein L11 methyltransferase PrmA
97c1ep3B_



not modelled 6.5 50 PDB header:oxidoreductase
Chain: B: PDB Molecule:dihydroorotate dehydrogenase b (pyrk subunit);
PDBTitle: crystal structure of lactococcus lactis dihydroorotate dehydrogenase2 b. data collected under cryogenic conditions.
98c1xk8A_



not modelled 6.5 29 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:divalent cation tolerant protein cuta;
PDBTitle: divalent cation tolerant protein cuta from homo sapiens2 o60888
99d2zfha1



not modelled 6.5 29 Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:Divalent ion tolerance proteins CutA (CutA1)

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0