Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	M	R	K	M	L	L	A	A	A	L	S	V	T	A	M	T	A	H	A	D	Y	Q	C	S	V	T	P	R	D	D	V	I	V	S	P	Q	T	V	Q	V	K	G	E	N	G	N	L	V	I	T	P	D	G	N	V	M	Y	N	G
Secondary structure
SS confidence
Disorder		?	?	?											?			?	?	?	?	?	?	?																					?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		K	Q	Y	S	L	N	A	A	Q	R	E	Q	A	K	D	Y	Q	A	E	L	R	S	T	L	P	W	I	D	E	G	A	K	S	R	V	E	K	A	R	I	A	L	D	K	I	I	V	Q	E	M	G	E	S	S	K	M	R	S	R	L
Secondary structure
SS confidence
Disorder			?		?	?	?																																										?	?			?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		T	K	L	D	A	Q	L	K	E	Q	M	N	R	I	I	E	T	R	S	D	G	L	T	F	H	Y	K	A	I	D	Q	V	R	A	E	G	Q	Q	L	V	N	Q	A	M	G	G	I	L	Q	D	S	I	N	E	M	G	A	K	A	V
Secondary structure
SS confidence
Disorder													?	?						?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Sequence		L	K	S	G	G	N	P	L	Q	N	V	L	G	S	L	G	G	L	Q	S	S	I	Q	T	E	W	K	K	Q	E	K	D	F	Q	Q	F	G	K	D	V	C	S	R	V	V	T	L	E	D	S	R	K	A	L	V	G	N	L	K
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																																																	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1eq1 chain A Region: 145 - 239 Aligned: 95 Modelled: 95 Confidence: 60.9% Identity: 13% Fold: Apolipophorin-III Superfamily: Apolipophorin-III Family: Apolipophorin-III Phyre2 PDB 2pfu chain A Region: 48 - 72 Aligned: 25 Modelled: 25 Confidence: 54.9% Identity: 8% PDB header:transport protein Chain: A: PDB Molecule:biopolymer transport exbd protein; PDBTitle: nmr strcuture determination of the periplasmic domain of exbd from2 e.coli Phyre2 PDB 1kgs chain A domain 1 Region: 46 - 74 Aligned: 29 Modelled: 29 Confidence: 53.2% Identity: 14% Fold: DNA/RNA-binding 3-helical bundle Superfamily: C-terminal effector domain of the bipartite response regulators Family: PhoB-like Phyre2 PDB 1eej chain A domain 2 Region: 36 - 69 Aligned: 34 Modelled: 34 Confidence: 52.0% Identity: 26% Fold: Cystatin-like Superfamily: DsbC/DsbG N-terminal domain-like Family: DsbC/DsbG N-terminal domain-like Phyre2 PDB 3poa chain A Region: 21 - 64 Aligned: 43 Modelled: 44 Confidence: 46.2% Identity: 14% PDB header:peptide binding protein Chain: A: PDB Molecule:putative uncharacterized protein tb39.8; PDBTitle: structural and functional analysis of phosphothreonine-dependent fha2 domain interactions Phyre2 PDB 1t3b chain A domain 2 Region: 36 - 69 Aligned: 34 Modelled: 34 Confidence: 42.9% Identity: 24% Fold: Cystatin-like Superfamily: DsbC/DsbG N-terminal domain-like Family: DsbC/DsbG N-terminal domain-like Phyre2 PDB 6pax chain A Region: 50 - 78 Aligned: 27 Modelled: 29 Confidence: 38.4% Identity: 22% PDB header:gene regulation/dna Chain: A: PDB Molecule:homeobox protein pax-6; PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions Phyre2 PDB 2pmu chain D Region: 46 - 74 Aligned: 29 Modelled: 29 Confidence: 38.3% Identity: 14% PDB header:transcription regulation Chain: D: PDB Molecule:response regulator phop; PDBTitle: crystal structure of the dna-binding domain of phop Phyre2 PDB 2iyj chain A Region: 36 - 66 Aligned: 31 Modelled: 31 Confidence: 38.2% Identity: 29% PDB header:isomerase Chain: A: PDB Molecule:thiol disulfide interchange protein dsbc; PDBTitle: crystal structure of the n-terminal dimer domain of e.coli2 dsbc Phyre2 PDB 1opc chain A Region: 46 - 74 Aligned: 29 Modelled: 29 Confidence: 35.8% Identity: 10% Fold: DNA/RNA-binding 3-helical bundle Superfamily: C-terminal effector domain of the bipartite response regulators Family: PhoB-like Phyre2 PDB 1pdn chain C Region: 50 - 78 Aligned: 27 Modelled: 29 Confidence: 35.5% Identity: 26% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Paired domain Phyre2 PDB 2hwv chain A Region: 46 - 74 Aligned: 29 Modelled: 29 Confidence: 31.1% Identity: 31% PDB header:transcription Chain: A: PDB Molecule:dna-binding response regulator vicr; PDBTitle: crystal structure of an essential response regulator dna binding2 domain, vicrc in enterococcus faecalis, a member of the yycf3 subfamily. Phyre2 PDB 2jzy chain A Region: 46 - 76 Aligned: 31 Modelled: 31 Confidence: 30.8% Identity: 13% PDB header:transcription Chain: A: PDB Molecule:transcriptional regulatory protein pcor; PDBTitle: solution structure of c-terminal effector domain of2 putative two-component-system response regulator involved3 in copper resistance from klebsiella pneumoniae Phyre2 PDB 1smp chain I Region: 20 - 59 Aligned: 40 Modelled: 40 Confidence: 30.7% Identity: 18% Fold: Streptavidin-like Superfamily: beta-Barrel protease inhibitors Family: Metalloprotease inhibitor Phyre2 PDB 1p2f chain A domain 1 Region: 46 - 78 Aligned: 33 Modelled: 33 Confidence: 30.2% Identity: 27% Fold: DNA/RNA-binding 3-helical bundle Superfamily: C-terminal effector domain of the bipartite response regulators Family: PhoB-like Phyre2 PDB 1g3g chain A Region: 21 - 66 Aligned: 46 Modelled: 46 Confidence: 29.6% Identity: 15% Fold: SMAD/FHA domain Superfamily: SMAD/FHA domain Family: FHA domain Phyre2 PDB 3fm8 chain A Region: 21 - 64 Aligned: 43 Modelled: 44 Confidence: 25.7% Identity: 14% PDB header:transport protein/hydrolase activator Chain: A: PDB Molecule:kinesin-like protein kif13b; PDBTitle: crystal structure of full length centaurin alpha-1 bound with the fha2 domain of kif13b (capri target) Phyre2 PDB 1ys7 chain A domain 1 Region: 46 - 128 Aligned: 71 Modelled: 83 Confidence: 24.1% Identity: 15% Fold: DNA/RNA-binding 3-helical bundle Superfamily: C-terminal effector domain of the bipartite response regulators Family: PhoB-like Phyre2 PDB 2zxj chain B Region: 46 - 76 Aligned: 31 Modelled: 31 Confidence: 23.0% Identity: 23% PDB header:transcription Chain: B: PDB Molecule:transcriptional regulatory protein walr; PDBTitle: crystal structure of yycf dna-binding domain from staphylococcus2 aureus Phyre2 PDB 2kkl chain A Region: 21 - 64 Aligned: 43 Modelled: 44 Confidence: 22.9% Identity: 23% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mb1858; PDBTitle: solution nmr structure of fha domain of mb1858 from2 mycobacterium bovis. northeast structural genomics3 consortium target mbr243c (24-155). Phyre2 1 d1eq1a_ 2 c2pfuA_ 3 d1kgsa1 4 d1eeja2 5 c3poaA_ 6 d1t3ba2 7 c6paxA_ 8 c2pmuD_ 9 c2iyjA_ 10 d1opca_ 11 d1pdnc_ 12 c2hwvA_ 13 c2jzyA_ 14 d1smpi_ 15 d1p2fa1 16 d1g3ga_ 17 c3fm8A_ 18 d1ys7a1 19 c2zxjB_ 20 c2kklA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1eq1a_ 60.9 13 Fold:Apolipophorin-III Superfamily:Apolipophorin-III Family:Apolipophorin-III 2 c2pfuA_ 54.9 8 PDB header:transport protein Chain: A: PDB Molecule:biopolymer transport exbd protein; PDBTitle: nmr strcuture determination of the periplasmic domain of exbd from2 e.coli 3 d1kgsa1 53.2 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:PhoB-like 4 d1eeja2 52.0 26 Fold:Cystatin-like Superfamily:DsbC/DsbG N-terminal domain-like Family:DsbC/DsbG N-terminal domain-like 5 c3poaA_ 46.2 14 PDB header:peptide binding protein Chain: A: PDB Molecule:putative uncharacterized protein tb39.8; PDBTitle: structural and functional analysis of phosphothreonine-dependent fha2 domain interactions 6 d1t3ba2 42.9 24 Fold:Cystatin-like Superfamily:DsbC/DsbG N-terminal domain-like Family:DsbC/DsbG N-terminal domain-like 7 c6paxA_ 38.4 22 PDB header:gene regulation/dna Chain: A: PDB Molecule:homeobox protein pax-6; PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions 8 c2pmuD_ 38.3 14 PDB header:transcription regulation Chain: D: PDB Molecule:response regulator phop; PDBTitle: crystal structure of the dna-binding domain of phop 9 c2iyjA_ 38.2 29 PDB header:isomerase Chain: A: PDB Molecule:thiol disulfide interchange protein dsbc; PDBTitle: crystal structure of the n-terminal dimer domain of e.coli2 dsbc 10 d1opca_ 35.8 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:PhoB-like 11 d1pdnc_ 35.5 26 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Paired domain 12 c2hwvA_ 31.1 31 PDB header:transcription Chain: A: PDB Molecule:dna-binding response regulator vicr; PDBTitle: crystal structure of an essential response regulator dna binding2 domain, vicrc in enterococcus faecalis, a member of the yycf3 subfamily. 13 c2jzyA_ 30.8 13 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulatory protein pcor; PDBTitle: solution structure of c-terminal effector domain of2 putative two-component-system response regulator involved3 in copper resistance from klebsiella pneumoniae 14 d1smpi_ 30.7 18 Fold:Streptavidin-like Superfamily:beta-Barrel protease inhibitors Family:Metalloprotease inhibitor 15 d1p2fa1 30.2 27 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:PhoB-like 16 d1g3ga_ 29.6 15 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 17 c3fm8A_ 25.7 14 PDB header:transport protein/hydrolase activator Chain: A: PDB Molecule:kinesin-like protein kif13b; PDBTitle: crystal structure of full length centaurin alpha-1 bound with the fha2 domain of kif13b (capri target) 18 d1ys7a1 24.1 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:PhoB-like 19 c2zxjB_ 23.0 23 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulatory protein walr; PDBTitle: crystal structure of yycf dna-binding domain from staphylococcus2 aureus 20 c2kklA_ 22.9 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mb1858; PDBTitle: solution nmr structure of fha domain of mb1858 from2 mycobacterium bovis. northeast structural genomics3 consortium target mbr243c (24-155). 21 d1pcfa_ not modelled 22.0 21 Fold:ssDNA-binding transcriptional regulator domain Superfamily:ssDNA-binding transcriptional regulator domain Family:Transcriptional coactivator PC4 C-terminal domain 22 d1wlna1 not modelled 22.0 19 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 23 c2raxY_ not modelled 21.8 13 PDB header:cell cycle Chain: Y: PDB Molecule:borealin; PDBTitle: crystal structure of borealin (20-78) bound to survivin (1-120) 24 d1d6za4 not modelled 19.7 18 Fold:N domain of copper amine oxidase-like Superfamily:Copper amine oxidase, domain N Family:Copper amine oxidase, domain N 25 c3gmgB_ not modelled 19.1 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein rv1825/mt1873; PDBTitle: crystal structure of an uncharacterized conserved protein2 from mycobacterium tuberculosis 26 c2hqnA_ not modelled 18.9 24 PDB header:signaling protein Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism 27 d1gxqa_ not modelled 18.7 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:PhoB-like 28 c2xu6B_ not modelled 18.5 14 PDB header:protein binding Chain: B: PDB Molecule:mdv1 coiled coil; PDBTitle: mdv1 coiled coil domain 29 d1oisa_ not modelled 18.4 30 Fold:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment Superfamily:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment Family:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment 30 c2k27A_ not modelled 17.9 21 PDB header:transcription regulator Chain: A: PDB Molecule:paired box protein pax-8; PDBTitle: solution structure of human pax8 paired box domain 31 c1nl3B_ not modelled 17.6 12 PDB header:protein transport Chain: B: PDB Molecule:preprotein translocase seca 1 subunit; PDBTitle: crystal structure of the seca protein translocation atpase2 from mycobacterium tuberculosis in apo form 32 d1k78a1 not modelled 17.4 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Paired domain 33 c2jv8A_ not modelled 17.3 38 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ne1242; PDBTitle: solution structure of protein ne1242 from nitrosomonas2 europaea. northeast structural genomics consortium target3 net4 34 c1r21A_ not modelled 16.7 14 PDB header:cell cycle Chain: A: PDB Molecule:antigen ki-67; PDBTitle: solution structure of human ki67 fha domain 35 c3prlD_ not modelled 16.3 25 PDB header:oxidoreductase Chain: D: PDB Molecule:nadp-dependent glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: crystal structure of nadp-dependent glyceraldehyde-3-phosphate2 dehydrogenase from bacillus halodurans c-125 36 d6paxa1 not modelled 15.8 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Paired domain 37 c1lq7A_ not modelled 15.0 18 PDB header:de novo protein Chain: A: PDB Molecule:alpha3w; PDBTitle: de novo designed protein model of radical enzymes 38 d1k4ta3 not modelled 15.0 26 Fold:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment Superfamily:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment Family:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment 39 d1ywya1 not modelled 14.8 15 Fold:PH domain-like barrel Superfamily:PA2021-like Family:PA2021-like 40 d1b63a1 not modelled 14.1 9 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:DNA gyrase/MutL, second domain 41 c3v4cB_ not modelled 13.8 27 PDB header:oxidoreductase Chain: B: PDB Molecule:aldehyde dehydrogenase (nadp+); PDBTitle: crystal structure of a semialdehyde dehydrogenase from sinorhizobium2 meliloti 1021 42 d1azca_ not modelled 13.4 18 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 43 d2hgsa1 not modelled 13.3 11 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:Eukaryotic glutathione synthetase, substrate-binding domain 44 d2o8ra2 not modelled 13.0 6 Fold:PHP14-like Superfamily:PHP14-like Family:PPK middle domain-like 45 c2b9sA_ not modelled 12.9 18 PDB header:isomerase/dna Chain: A: PDB Molecule:topoisomerase i-like protein; PDBTitle: crystal structure of heterodimeric l. donovani2 topoisomerase i-vanadate-dna complex 46 d1rz4a1 not modelled 12.4 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Eukaryotic translation initiation factor 3 subunit 12, eIF3k, C-terminal domain 47 d1cc3a_ not modelled 11.8 24 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 48 d1wnda_ not modelled 11.8 21 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 49 d2ccwa1 not modelled 11.2 18 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 50 c1gk9A_ not modelled 10.7 8 PDB header:antibiotic resistance Chain: A: PDB Molecule:penicillin g acylase alpha subunit; PDBTitle: crystal structures of penicillin acylase enzyme-substrate2 complexes: structural insights into the catalytic mechanism 51 d2g1la1 not modelled 10.3 13 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 52 c2ae3A_ not modelled 9.8 9 PDB header:hydrolase Chain: A: PDB Molecule:glutaryl 7-aminocephalosporanic acid acylase; PDBTitle: glutaryl 7-aminocephalosporanic acid acylase: mutational study of2 activation mechanism 53 c1a31A_ not modelled 9.6 27 PDB header:isomerase/dna Chain: A: PDB Molecule:protein (topoisomerase i); PDBTitle: human reconstituted dna topoisomerase i in covalent complex2 with a 22 base pair dna duplex 54 d1joia_ not modelled 9.4 21 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 55 c3nrlB_ not modelled 9.3 10 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein rumgna_01417; PDBTitle: crystal structure of protein rumgna_01417 from ruminococcus gnavus,2 northeast structural genomics consortium target ugr76 56 c1nh3A_ not modelled 9.3 27 PDB header:isomerase/dna Chain: A: PDB Molecule:dna topoisomerase i; PDBTitle: human topoisomerase i ara-c complex 57 c2h47C_ not modelled 9.2 15 PDB header:oxidoreductase/electron transport Chain: C: PDB Molecule:azurin; PDBTitle: crystal structure of an electron transfer complex between2 aromatic amine dephydrogenase and azurin from alcaligenes3 faecalis (form 1) 58 d2v4jc1 not modelled 9.0 29 Fold:DsrC, the gamma subunit of dissimilatory sulfite reductase Superfamily:DsrC, the gamma subunit of dissimilatory sulfite reductase Family:DsrC, the gamma subunit of dissimilatory sulfite reductase 59 c2p2uA_ not modelled 9.0 13 PDB header:dna binding protein Chain: A: PDB Molecule:host-nuclease inhibitor protein gam, putative; PDBTitle: crystal structure of putative host-nuclease inhibitor2 protein gam from desulfovibrio vulgaris 60 c3uotB_ not modelled 8.8 17 PDB header:cell cycle Chain: B: PDB Molecule:mediator of dna damage checkpoint protein 1; PDBTitle: crystal structure of mdc1 fha domain in complex with a phosphorylated2 peptide from the mdc1 n-terminus 61 c3k3wA_ not modelled 8.6 19 PDB header:hydrolase Chain: A: PDB Molecule:penicillin g acylase; PDBTitle: thermostable penicillin g acylase from alcaligence faecalis2 in orthorhombic form 62 d1jzga_ not modelled 8.5 21 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 63 d1uhta_ not modelled 8.5 17 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 64 d2ff4a3 not modelled 8.4 18 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 65 c2k4jA_ not modelled 8.2 19 PDB header:transcription Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: arsr dna binding domain 66 d1h7sa1 not modelled 8.2 14 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:DNA gyrase/MutL, second domain 67 c1t3jA_ not modelled 8.1 12 PDB header:membrane protein Chain: A: PDB Molecule:mitofusin 1; PDBTitle: mitofusin domain hr2 v686m/i708m mutant 68 d2affa1 not modelled 7.9 14 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 69 c3i38D_ not modelled 7.8 16 PDB header:chaperone Chain: D: PDB Molecule:putative chaperone dnaj; PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578 70 d2g82a1 not modelled 7.5 25 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 71 d1g6ga_ not modelled 7.5 20 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 72 c3gqsB_ not modelled 7.4 20 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:adenylate cyclase-like protein; PDBTitle: crystal structure of the fha domain of ct664 protein from chlamydia2 trachomatis 73 d1ggaa1 not modelled 7.3 17 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 74 c3swfA_ not modelled 7.2 18 PDB header:transport protein Chain: A: PDB Molecule:cgmp-gated cation channel alpha-1; PDBTitle: cnga1 621-690 containing clz domain 75 d1oaia_ not modelled 7.0 17 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TAP-C domain-like 76 c3iwkB_ not modelled 7.0 9 PDB header:oxidoreductase Chain: B: PDB Molecule:aminoaldehyde dehydrogenase; PDBTitle: crystal structure of aminoaldehyde dehydrogenase 1 from2 pisum sativum (psamadh1) 77 d1o04a_ not modelled 7.0 8 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 78 c3i38L_ not modelled 7.0 15 PDB header:chaperone Chain: L: PDB Molecule:putative chaperone dnaj; PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578 79 d1f32a_ not modelled 7.0 9 Fold:Pepsin inhibitor-3 Superfamily:Pepsin inhibitor-3 Family:Pepsin inhibitor-3 80 c3b4wA_ not modelled 6.7 18 PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of mycobacterium tuberculosis aldehyde dehydrogenase2 complexed with nad+ 81 c2wybA_ not modelled 6.6 23 PDB header:hydrolase Chain: A: PDB Molecule:acyl-homoserine lactone acylase pvdq subunit PDBTitle: the quorum quenching n-acyl homoserine lactone acylase pvdq2 with a covalently bound dodecanoic acid 82 d1tg7a5 not modelled 6.6 15 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Glycosyl hydrolases family 35 catalytic domain 83 c2ve5H_ not modelled 6.6 7 PDB header:oxidoreductase Chain: H: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: crystallographic structure of betaine aldehyde2 dehydrogenase from pseudomonas aeruginosa 84 c3ho6B_ not modelled 6.4 16 PDB header:toxin Chain: B: PDB Molecule:toxin a; PDBTitle: structure-function analysis of inositol hexakisphosphate-2 induced autoprocessing in clostridium difficile toxin a 85 d1xdpa2 not modelled 6.4 19 Fold:PHP14-like Superfamily:PHP14-like Family:PPK middle domain-like 86 c1jzdA_ not modelled 6.3 29 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbc; PDBTitle: dsbc-dsbdalpha complex 87 d1hloa_ not modelled 6.3 23 Fold:HLH-like Superfamily:HLH, helix-loop-helix DNA-binding domain Family:HLH, helix-loop-helix DNA-binding domain 88 c2kz6A_ not modelled 6.3 32 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of protein cv0426 from chromobacterium violaceum,2 northeast structural genomics consortium (nesg) target cvt2 89 d2ff4a1 not modelled 6.1 5 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:PhoB-like 90 c1fi4A_ not modelled 6.1 18 PDB header:lyase Chain: A: PDB Molecule:mevalonate 5-diphosphate decarboxylase; PDBTitle: the x-ray crystal structure of mevalonate 5-diphosphate decarboxylase2 at 2.3 angstrom resolution. 91 c3nepX_ not modelled 6.0 16 PDB header:oxidoreductase Chain: X: PDB Molecule:malate dehydrogenase; PDBTitle: 1.55a resolution structure of malate dehydrogenase from salinibacter2 ruber 92 c1ajnA_ not modelled 5.9 8 PDB header:antibiotic resistance Chain: A: PDB Molecule:penicillin amidohydrolase; PDBTitle: penicillin acylase complexed with p-nitrophenylacetic acid 93 d1n62a2 not modelled 5.9 14 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 94 c1m5iA_ not modelled 5.8 14 PDB header:antitumor protein Chain: A: PDB Molecule:apc protein; PDBTitle: crystal structure of the coiled coil region 129-250 of the2 tumor suppressor gene product apc 95 c2pnvA_ not modelled 5.8 32 PDB header:membrane protein Chain: A: PDB Molecule:small conductance calcium-activated potassium PDBTitle: crystal structure of the leucine zipper domain of small-2 conductance ca2+-activated k+ (skca) channel from rattus3 norvegicus 96 d1ag8a_ not modelled 5.7 8 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 97 c1t3bA_ not modelled 5.7 26 PDB header:isomerase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbc; PDBTitle: x-ray structure of dsbc from haemophilus influenzae 98 d1bhga3 not modelled 5.7 24 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 99 d1lgpa_ not modelled 5.6 13 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0