Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	T	P	S	D	L	N	I	Y	Q	L	I	D	T	Q	N	G	R	V	T	P	R	I	Y	T	D	P	D	I	Y	Q	L	E	L	E	R	I	F	G	R	C	W	L	F	L	A	H	E	S	Q	I	P	K	P	G	D	F	F	N
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?		?		?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		T	Y	M	G	E	D	A	V	V	V	V	R	Q	K	D	G	S	I	K	A	F	L	N	Q	C	R	H	R	A	M	R	V	S	Y	A	D	C	G	N	T	R	A	F	T	C	P	Y	H	G	W	S	Y	G	I	N	G	E	L	I	D
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		V	P	L	E	P	R	A	Y	P	Q	G	L	C	K	S	H	W	G	L	N	E	V	P	C	V	E	S	Y	K	G	L	I	F	G	N	W	D	T	S	A	P	G	L	R	D	Y	L	G	D	I	A	W	Y	L	D	G	M	L	D	R
Secondary structure
SS confidence
Disorder										?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		R	E	G	G	T	E	I	V	G	G	V	Q	K	W	V	I	N	C	N	W	K	F	P	A	E	Q	F	A	S	D	Q	Y	H	A	L	F	S	H	A	S	A	V	Q	V	L	G	A	K	D	D	G	S	D	K	R	L	G	D	G	Q
Secondary structure
SS confidence
Disorder																																													?	?		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		T	A	R	P	V	W	E	T	A	K	D	A	L	Q	F	G	Q	D	G	H	G	S	G	F	F	F	T	E	K	P	D	A	N	V	W	V	D	G	A	V	S	S	Y	Y	R	E	T	Y	A	E	A	E	Q	R	L	G	E	V	R	A
Secondary structure
SS confidence
Disorder											?																					?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		L	R	L	A	G	H	N	N	I	F	P	T	L	S	W	L	N	G	T	A	T	L	R	V	W	H	P	R	G	P	D	Q	V	E	V	W	A	F	C	I	T	D	K	A	A	S	D	E	V	K	A	A	F	E	N	S	A	T	R	A
Secondary structure
SS confidence
Disorder		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		F	G	P	A	G	F	L	E	Q	D	D	S	E	N	W	C	E	I	Q	K	L	L	K	G	H	R	A	R	N	S	K	L	C	L	E	M	G	L	G	Q	E	K	R	R	D	D	G	I	P	G	I	T	N	Y	I	F	S	E	T	A
Secondary structure
SS confidence
Disorder																								?	?	?	?	?	?	?	?									?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.
Sequence		A	R	G	M	Y	Q	R	W	A	D	L	L	S	S	E	S	W	Q	E	V	L	D	K	T	A	A	Y	Q	Q	E	V	M	K
Secondary structure
SS confidence
Disorder																	?	?	?	?	?	?	?	?	?	?	?						?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2gbx chain E Region: 12 - 447 Aligned: 428 Modelled: 430 Confidence: 100.0% Identity: 38% PDB header:oxidoreductase Chain: E: PDB Molecule:biphenyl 2,3-dioxygenase alpha subunit; PDBTitle: crystal structure of biphenyl 2,3-dioxygenase from sphingomonas2 yanoikuyae b1 bound to biphenyl Phyre2 PDB 2hmn chain A Region: 8 - 453 Aligned: 439 Modelled: 446 Confidence: 100.0% Identity: 36% PDB header:oxidoreductase Chain: A: PDB Molecule:naphthalene 1,2-dioxygenase alpha subunit; PDBTitle: crystal structure of the naphthalene 1,2-dioxygenase f352v2 mutant bound to anthracene. Phyre2 PDB 1wql chain A Region: 5 - 440 Aligned: 427 Modelled: 436 Confidence: 100.0% Identity: 44% PDB header:oxidoreductase Chain: A: PDB Molecule:iron-sulfur protein large subunit of cumene dioxygenase; PDBTitle: cumene dioxygenase (cuma1a2) from pseudomonas fluorescens ip01 Phyre2 PDB 1ulj chain A Region: 5 - 441 Aligned: 417 Modelled: 419 Confidence: 100.0% Identity: 48% PDB header:oxidoreductase Chain: A: PDB Molecule:biphenyl dioxygenase large subunit; PDBTitle: biphenyl dioxygenase (bpha1a2) in complex with the substrate Phyre2 PDB 2b1x chain E Region: 14 - 436 Aligned: 409 Modelled: 409 Confidence: 100.0% Identity: 39% PDB header:oxidoreductase Chain: E: PDB Molecule:naphthalene dioxygenase large subunit; PDBTitle: crystal structure of naphthalene 1,2-dioxygenase from rhodococcus sp. Phyre2 PDB 3n0q chain A Region: 5 - 437 Aligned: 397 Modelled: 407 Confidence: 100.0% Identity: 22% PDB header:oxidoreductase Chain: A: PDB Molecule:putative aromatic-ring hydroxylating dioxygenase; PDBTitle: crystal structure of a putative aromatic-ring hydroxylating2 dioxygenase (tm1040_3219) from silicibacter sp. tm1040 at 1.80 a3 resolution Phyre2 PDB 1o7n chain A domain 2 Region: 159 - 453 Aligned: 287 Modelled: 295 Confidence: 100.0% Identity: 30% Fold: TBP-like Superfamily: Bet v1-like Family: Ring hydroxylating alpha subunit catalytic domain Phyre2 PDB 1wql chain A domain 2 Region: 160 - 440 Aligned: 273 Modelled: 273 Confidence: 100.0% Identity: 38% Fold: TBP-like Superfamily: Bet v1-like Family: Ring hydroxylating alpha subunit catalytic domain Phyre2 PDB 2bmo chain A domain 2 Region: 159 - 447 Aligned: 281 Modelled: 289 Confidence: 100.0% Identity: 30% Fold: TBP-like Superfamily: Bet v1-like Family: Ring hydroxylating alpha subunit catalytic domain Phyre2 PDB 1uli chain A domain 2 Region: 160 - 440 Aligned: 262 Modelled: 262 Confidence: 100.0% Identity: 44% Fold: TBP-like Superfamily: Bet v1-like Family: Ring hydroxylating alpha subunit catalytic domain Phyre2 PDB 2b1x chain A domain 2 Region: 160 - 436 Aligned: 263 Modelled: 263 Confidence: 100.0% Identity: 34% Fold: TBP-like Superfamily: Bet v1-like Family: Ring hydroxylating alpha subunit catalytic domain Phyre2 PDB 3gte chain B Region: 40 - 438 Aligned: 322 Modelled: 341 Confidence: 100.0% Identity: 16% PDB header:electron transport, oxidoreductase Chain: B: PDB Molecule:ddmc; PDBTitle: crystal structure of dicamba monooxygenase with non-heme2 iron Phyre2 PDB 3gkq chain B Region: 33 - 434 Aligned: 347 Modelled: 355 Confidence: 100.0% Identity: 16% PDB header:oxidoreductase Chain: B: PDB Molecule:terminal oxygenase component of carbazole 1,9a- PDBTitle: terminal oxygenase of carbazole 1,9a-dioxygenase from2 novosphingobium sp. ka1 Phyre2 PDB 3gcf chain C Region: 33 - 434 Aligned: 346 Modelled: 365 Confidence: 100.0% Identity: 18% PDB header:oxidoreductase Chain: C: PDB Molecule:terminal oxygenase component of carbazole 1,9a- PDBTitle: terminal oxygenase of carbazole 1,9a-dioxygenase from2 nocardioides aromaticivorans ic177 Phyre2 PDB 1wql chain A domain 1 Region: 5 - 159 Aligned: 154 Modelled: 155 Confidence: 100.0% Identity: 56% Fold: ISP domain Superfamily: ISP domain Family: Ring hydroxylating alpha subunit ISP domain Phyre2 PDB 1z01 chain D Region: 31 - 434 Aligned: 354 Modelled: 376 Confidence: 100.0% Identity: 16% PDB header:oxidoreductase Chain: D: PDB Molecule:2-oxo-1,2-dihydroquinoline 8-monooxygenase, PDBTitle: 2-oxoquinoline 8-monooxygenase component: active site2 modulation by rieske-[2fe-2s] center oxidation/reduction Phyre2 PDB 2b1x chain A domain 1 Region: 15 - 159 Aligned: 145 Modelled: 145 Confidence: 100.0% Identity: 48% Fold: ISP domain Superfamily: ISP domain Family: Ring hydroxylating alpha subunit ISP domain Phyre2 PDB 1uli chain A domain 1 Region: 5 - 159 Aligned: 153 Modelled: 155 Confidence: 100.0% Identity: 58% Fold: ISP domain Superfamily: ISP domain Family: Ring hydroxylating alpha subunit ISP domain Phyre2 PDB 2bmo chain A domain 1 Region: 11 - 158 Aligned: 148 Modelled: 148 Confidence: 100.0% Identity: 47% Fold: ISP domain Superfamily: ISP domain Family: Ring hydroxylating alpha subunit ISP domain Phyre2 PDB 2zyl chain A Region: 38 - 443 Aligned: 320 Modelled: 348 Confidence: 100.0% Identity: 16% PDB header:oxidoreductase Chain: A: PDB Molecule:possible oxidoreductase; PDBTitle: crystal structure of 3-ketosteroid-9-alpha-hydroxylase2 (ksha) from m. tuberculosis Phyre2 1 c2gbxE_ 2 c2hmnA_ 3 c1wqlA_ 4 c1uljA_ 5 c2b1xE_ 6 c3n0qA_ 7 d1o7na2 8 d1wqla2 9 d2bmoa2 10 d1ulia2 11 d2b1xa2 12 c3gteB_ 13 c3gkqB_ 14 c3gcfC_ 15 d1wqla1 16 c1z01D_ 17 d2b1xa1 18 d1ulia1 19 d2bmoa1 20 c2zylA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2gbxE_ 100.0 38 PDB header:oxidoreductase Chain: E: PDB Molecule:biphenyl 2,3-dioxygenase alpha subunit; PDBTitle: crystal structure of biphenyl 2,3-dioxygenase from sphingomonas2 yanoikuyae b1 bound to biphenyl 2 c2hmnA_ 100.0 36 PDB header:oxidoreductase Chain: A: PDB Molecule:naphthalene 1,2-dioxygenase alpha subunit; PDBTitle: crystal structure of the naphthalene 1,2-dioxygenase f352v2 mutant bound to anthracene. 3 c1wqlA_ 100.0 44 PDB header:oxidoreductase Chain: A: PDB Molecule:iron-sulfur protein large subunit of cumene dioxygenase; PDBTitle: cumene dioxygenase (cuma1a2) from pseudomonas fluorescens ip01 4 c1uljA_ 100.0 48 PDB header:oxidoreductase Chain: A: PDB Molecule:biphenyl dioxygenase large subunit; PDBTitle: biphenyl dioxygenase (bpha1a2) in complex with the substrate 5 c2b1xE_ 100.0 39 PDB header:oxidoreductase Chain: E: PDB Molecule:naphthalene dioxygenase large subunit; PDBTitle: crystal structure of naphthalene 1,2-dioxygenase from rhodococcus sp. 6 c3n0qA_ 100.0 22 PDB header:oxidoreductase Chain: A: PDB Molecule:putative aromatic-ring hydroxylating dioxygenase; PDBTitle: crystal structure of a putative aromatic-ring hydroxylating2 dioxygenase (tm1040_3219) from silicibacter sp. tm1040 at 1.80 a3 resolution 7 d1o7na2 100.0 30 Fold:TBP-like Superfamily:Bet v1-like Family:Ring hydroxylating alpha subunit catalytic domain 8 d1wqla2 100.0 38 Fold:TBP-like Superfamily:Bet v1-like Family:Ring hydroxylating alpha subunit catalytic domain 9 d2bmoa2 100.0 30 Fold:TBP-like Superfamily:Bet v1-like Family:Ring hydroxylating alpha subunit catalytic domain 10 d1ulia2 100.0 44 Fold:TBP-like Superfamily:Bet v1-like Family:Ring hydroxylating alpha subunit catalytic domain 11 d2b1xa2 100.0 34 Fold:TBP-like Superfamily:Bet v1-like Family:Ring hydroxylating alpha subunit catalytic domain 12 c3gteB_ 100.0 16 PDB header:electron transport, oxidoreductase Chain: B: PDB Molecule:ddmc; PDBTitle: crystal structure of dicamba monooxygenase with non-heme2 iron 13 c3gkqB_ 100.0 16 PDB header:oxidoreductase Chain: B: PDB Molecule:terminal oxygenase component of carbazole 1,9a- PDBTitle: terminal oxygenase of carbazole 1,9a-dioxygenase from2 novosphingobium sp. ka1 14 c3gcfC_ 100.0 18 PDB header:oxidoreductase Chain: C: PDB Molecule:terminal oxygenase component of carbazole 1,9a- PDBTitle: terminal oxygenase of carbazole 1,9a-dioxygenase from2 nocardioides aromaticivorans ic177 15 d1wqla1 100.0 56 Fold:ISP domain Superfamily:ISP domain Family:Ring hydroxylating alpha subunit ISP domain 16 c1z01D_ 100.0 16 PDB header:oxidoreductase Chain: D: PDB Molecule:2-oxo-1,2-dihydroquinoline 8-monooxygenase, PDBTitle: 2-oxoquinoline 8-monooxygenase component: active site2 modulation by rieske-[2fe-2s] center oxidation/reduction 17 d2b1xa1 100.0 48 Fold:ISP domain Superfamily:ISP domain Family:Ring hydroxylating alpha subunit ISP domain 18 d1ulia1 100.0 58 Fold:ISP domain Superfamily:ISP domain Family:Ring hydroxylating alpha subunit ISP domain 19 d2bmoa1 100.0 47 Fold:ISP domain Superfamily:ISP domain Family:Ring hydroxylating alpha subunit ISP domain 20 c2zylA_ 100.0 16 PDB header:oxidoreductase Chain: A: PDB Molecule:possible oxidoreductase; PDBTitle: crystal structure of 3-ketosteroid-9-alpha-hydroxylase2 (ksha) from m. tuberculosis 21 c2de7B_ not modelled 100.0 17 PDB header:oxidoreductase Chain: B: PDB Molecule:terminal oxygenase component of carbazole; PDBTitle: the substrate-bound complex between oxygenase and2 ferredoxin in carbazole 1,9a-dioxygenase 22 d1o7na1 not modelled 100.0 46 Fold:ISP domain Superfamily:ISP domain Family:Ring hydroxylating alpha subunit ISP domain 23 d1z01a1 not modelled 100.0 21 Fold:ISP domain Superfamily:ISP domain Family:Ring hydroxylating alpha subunit ISP domain 24 d2de6a1 not modelled 100.0 25 Fold:ISP domain Superfamily:ISP domain Family:Ring hydroxylating alpha subunit ISP domain 25 c3d89A_ not modelled 99.9 16 PDB header:electron transport Chain: A: PDB Molecule:rieske domain-containing protein; PDBTitle: crystal structure of a soluble rieske ferredoxin from mus musculus 26 d1vm9a_ not modelled 99.8 21 Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP) 27 c2de7E_ not modelled 99.8 21 PDB header:oxidoreductase Chain: E: PDB Molecule:ferredoxin component of carbazole; PDBTitle: the substrate-bound complex between oxygenase and2 ferredoxin in carbazole 1,9a-dioxygenase 28 d2jzaa1 not modelled 99.8 14 Fold:ISP domain Superfamily:ISP domain Family:NirD-like 29 c3dqyA_ not modelled 99.8 20 PDB header:oxidoreductase Chain: A: PDB Molecule:toluene 1,2-dioxygenase system ferredoxin PDBTitle: crystal structure of toluene 2,3-dioxygenase ferredoxin 30 d3c0da1 not modelled 99.8 12 Fold:ISP domain Superfamily:ISP domain Family:NirD-like 31 c3gceA_ not modelled 99.8 22 PDB header:oxidoreductase Chain: A: PDB Molecule:ferredoxin component of carbazole 1,9a- PDBTitle: ferredoxin of carbazole 1,9a-dioxygenase from nocardioides2 aromaticivorans ic177 32 d1fqta_ not modelled 99.8 16 Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP) 33 c2qpzA_ not modelled 99.8 22 PDB header:metal binding protein Chain: A: PDB Molecule:naphthalene 1,2-dioxygenase system ferredoxin PDBTitle: naphthalene 1,2-dioxygenase rieske ferredoxin 34 d2jo6a1 not modelled 99.8 14 Fold:ISP domain Superfamily:ISP domain Family:NirD-like 35 c2i7fB_ not modelled 99.7 22 PDB header:oxidoreductase Chain: B: PDB Molecule:ferredoxin component of dioxygenase; PDBTitle: sphingomonas yanoikuyae b1 ferredoxin 36 d1q90c_ not modelled 99.6 23 Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP) 37 d1rfsa_ not modelled 99.6 24 Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP) 38 d3cx5e1 not modelled 99.4 28 Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP) 39 d2e74d1 not modelled 99.4 22 Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP) 40 d1g8kb_ not modelled 99.4 18 Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP) 41 d1riea_ not modelled 99.4 23 Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP) 42 c2nvgA_ not modelled 99.3 19 PDB header:oxidoreductase Chain: A: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit; PDBTitle: soluble domain of rieske iron sulfur protein. 43 c2e76D_ not modelled 99.0 23 PDB header:photosynthesis Chain: D: PDB Molecule:cytochrome b6-f complex iron-sulfur subunit; PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus 44 c2fynO_ not modelled 99.0 21 PDB header:oxidoreductase Chain: O: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex 45 d1nyka_ not modelled 98.9 24 Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP) 46 c2fyuE_ not modelled 98.8 22 PDB header:oxidoreductase Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit, PDBTitle: crystal structure of bovine heart mitochondrial bc1 with jg1442 inhibitor 47 c1p84E_ not modelled 98.3 25 PDB header:oxidoreductase Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur PDBTitle: hdbt inhibited yeast cytochrome bc1 complex 48 d1z01a2 not modelled 97.7 13 Fold:TBP-like Superfamily:Bet v1-like Family:Ring hydroxylating alpha subunit catalytic domain 49 d1jm1a_ not modelled 97.3 25 Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP) 50 d2de6a2 not modelled 96.3 17 Fold:TBP-like Superfamily:Bet v1-like Family:Ring hydroxylating alpha subunit catalytic domain 51 d1uhva1 not modelled 31.4 28 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:Composite domain of glycosyl hydrolase families 5, 30, 39 and 51 52 c3fcgB_ not modelled 29.7 27 PDB header:membrane protein, protein transport Chain: B: PDB Molecule:f1 capsule-anchoring protein; PDBTitle: crystal structure analysis of the middle domain of the2 caf1a usher 53 c3kv0A_ not modelled 28.3 43 PDB header:transport protein Chain: A: PDB Molecule:het-c2; PDBTitle: crystal structure of het-c2: a fungal glycolipid transfer protein2 (gltp) 54 d1mkna_ not modelled 24.1 67 Fold:Midkine Superfamily:Midkine Family:Midkine, a heparin-binding growth factor, N-terminal domain 55 d1wmxa_ not modelled 23.9 22 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:Family 30 carbohydrate binding module, CBM30 (PKD repeat) 56 d2fu5a1 not modelled 23.8 25 Fold:Mss4-like Superfamily:Mss4-like Family:RabGEF Mss4 57 d1pwka_ not modelled 23.7 13 Fold:DLC Superfamily:DLC Family:DLC 58 c1ddzA_ not modelled 23.2 42 PDB header:lyase Chain: A: PDB Molecule:carbonic anhydrase; PDBTitle: x-ray structure of a beta-carbonic anhydrase from the red2 alga, porphyridium purpureum r-1 59 c1lshB_ not modelled 22.3 19 PDB header:lipid binding protein Chain: B: PDB Molecule:lipovitellin (lv-2); PDBTitle: lipid-protein interactions in lipovitellin 60 d1lshb_ not modelled 22.3 19 Fold:Lipovitellin-phosvitin complex; beta-sheet shell regions Superfamily:Lipovitellin-phosvitin complex; beta-sheet shell regions Family:Lipovitellin-phosvitin complex; beta-sheet shell regions 61 d1w91a1 not modelled 22.2 50 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:Composite domain of glycosyl hydrolase families 5, 30, 39 and 51 62 d1hxra_ not modelled 21.5 25 Fold:Mss4-like Superfamily:Mss4-like Family:RabGEF Mss4 63 d3brda2 not modelled 18.6 35 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:p53-like transcription factors Family:DNA-binding protein LAG-1 (CSL) 64 d1ddza2 not modelled 18.6 42 Fold:Resolvase-like Superfamily:beta-carbonic anhydrase, cab Family:beta-carbonic anhydrase, cab 65 c2x3mA_ not modelled 18.4 33 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein orf239; PDBTitle: crystal structure of hypothetical protein orf239 from pyrobaculum2 spherical virus 66 c2wb6A_ not modelled 18.0 16 PDB header:viral protein Chain: A: PDB Molecule:afv1-102; PDBTitle: crystal structure of afv1-102, a protein from the acidianus2 filamentous virus 1 67 d3orca_ not modelled 16.7 24 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 68 c2c3yA_ not modelled 16.3 27 PDB header:oxidoreductase Chain: A: PDB Molecule:pyruvate-ferredoxin oxidoreductase; PDBTitle: crystal structure of the radical form of2 pyruvate:ferredoxin oxidoreductase from desulfovibrio3 africanus 69 c3lasA_ not modelled 15.5 29 PDB header:lyase Chain: A: PDB Molecule:putative carbonic anhydrase; PDBTitle: crystal structure of carbonic anhydrase from streptococcus mutans to2 1.4 angstrom resolution 70 d1nr3a_ not modelled 15.3 19 Fold:DNA-binding protein Tfx Superfamily:DNA-binding protein Tfx Family:DNA-binding protein Tfx 71 c1ylkA_ not modelled 14.4 29 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein rv1284/mt1322; PDBTitle: crystal structure of rv1284 from mycobacterium tuberculosis in complex2 with thiocyanate 72 d1swxa_ not modelled 14.1 80 Fold:Glycolipid transfer protein, GLTP Superfamily:Glycolipid transfer protein, GLTP Family:Glycolipid transfer protein, GLTP 73 c2i3fA_ not modelled 13.5 40 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:glycolipid transfer-like protein; PDBTitle: crystal structure of a glycolipid transfer-like protein2 from galdieria sulphuraria 74 d1cmia_ not modelled 13.5 13 Fold:DLC Superfamily:DLC Family:DLC 75 d1e1oa1 not modelled 13.1 20 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 76 c2lm4A_ not modelled 13.0 38 PDB header:protein binding Chain: A: PDB Molecule:succinate dehydrogenase assembly factor 2, mitochondrial; PDBTitle: solution nmr structure of mitochondrial succinate dehydrogenase2 assembly factor 2 from saccharomyces cerevisiae, northeast structural3 genomics consortium target yt682a 77 d2c42a2 not modelled 13.0 27 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:PFOR PP module 78 c2jz8A_ not modelled 12.6 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein bh09830; PDBTitle: solution nmr structure of bh09830 from bartonella henselae2 modeled with one zn+2 bound. northeast structural genomics3 consortium target bnr55 79 c2vpyB_ not modelled 12.4 27 PDB header:oxidoreductase Chain: B: PDB Molecule:nrfc protein; PDBTitle: polysulfide reductase with bound quinone inhibitor,2 pentachlorophenol (pcp) 80 c3brgC_ not modelled 12.2 35 PDB header:dna binding protein/dna Chain: C: PDB Molecule:recombining binding protein suppressor of PDBTitle: csl (rbp-jk) bound to dna 81 d3cdda1 not modelled 12.2 17 Fold:Phage tail proteins Superfamily:Phage tail proteins Family:Baseplate protein-like 82 c3izbP_ not modelled 12.1 60 PDB header:ribosome Chain: P: PDB Molecule:40s ribosomal protein rps11 (s17p); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 83 c2a8cE_ not modelled 11.9 50 PDB header:lyase Chain: E: PDB Molecule:carbonic anhydrase 2; PDBTitle: haemophilus influenzae beta-carbonic anhydrase 84 c3iz6P_ not modelled 11.8 60 PDB header:ribosome Chain: P: PDB Molecule:40s ribosomal protein s11 (s17p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 85 d3e2ba1 not modelled 11.8 13 Fold:DLC Superfamily:DLC Family:DLC 86 c2fo1A_ not modelled 11.6 35 PDB header:gene regulation/signalling protein/dna Chain: A: PDB Molecule:lin-12 and glp-1 phenotype protein 1, isoform b; PDBTitle: crystal structure of the csl-notch-mastermind ternary2 complex bound to dna 87 d1bbua1 not modelled 11.4 20 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 88 d1kt0a2 not modelled 11.2 26 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 89 d1ddza1 not modelled 10.9 43 Fold:Resolvase-like Superfamily:beta-carbonic anhydrase, cab Family:beta-carbonic anhydrase, cab 90 c2yrtA_ not modelled 10.8 25 PDB header:transcription Chain: A: PDB Molecule:chord containing protein-1; PDBTitle: solution structure of the chord domain of human chord-2 containing protein 1 91 c2w3nA_ not modelled 10.8 32 PDB header:lyase Chain: A: PDB Molecule:carbonic anhydrase 2; PDBTitle: structure and inhibition of the co2-sensing carbonic2 anhydrase can2 from the pathogenic fungus cryptococcus3 neoformans 92 d1nfga1 not modelled 10.6 22 Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:Hydantoinase (dihydropyrimidinase) 93 d1ubdc4 not modelled 10.5 44 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 94 d1vmka_ not modelled 10.4 20 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 95 c3eyxB_ not modelled 10.2 27 PDB header:lyase Chain: B: PDB Molecule:carbonic anhydrase; PDBTitle: crystal structure of carbonic anhydrase nce103 from2 saccharomyces cerevisiae 96 d2abxa_ not modelled 10.2 42 Fold:Snake toxin-like Superfamily:Snake toxin-like Family:Snake venom toxins 97 d1d1la_ not modelled 10.2 24 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 98 c2ivfB_ not modelled 9.6 16 PDB header:oxidoreductase Chain: B: PDB Molecule:ethylbenzene dehydrogenase beta-subunit; PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum 99 c2xznQ_ not modelled 9.6 40 PDB header:ribosome Chain: Q: PDB Molecule:ribosomal protein s17 containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0