Phyre 2 Results for P0ABR5

Phyre Home | Retrieve Phyre Job Id

Email | l.a.kelley@imperial.ac.uk
Description | P0ABR5
Date | Thu Jan 5 11:16:07 GMT 2012
Unique Job ID | 39a095706115e165

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c2gbxE_
Top template information
PDB header:oxidoreductase Chain: E: PDB Molecule:biphenyl 2,3-dioxygenase alpha subunit; PDBTitle: crystal structure of biphenyl 2,3-dioxygenase from sphingomonas2 yanoikuyae b1 bound to biphenyl
Confidence and coverage
Confidence: | 100.0% | Coverage: | 94%
428 residues ( 94% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | T | T | P | S | D | L | N | I | Y | Q | L | I | D | T | Q | N | G | R | V | T | P | R | I | Y | T | D | P | D | I | Y | Q | L | E | L | E | R | I | F | G | R | C | W | L | F | L | A | H | E | S | Q | I | P | K | P | G | D | F | F | N
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? |  | ? |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | T | Y | M | G | E | D | A | V | V | V | V | R | Q | K | D | G | S | I | K | A | F | L | N | Q | C | R | H | R | A | M | R | V | S | Y | A | D | C | G | N | T | R | A | F | T | C | P | Y | H | G | W | S | Y | G | I | N | G | E | L | I | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | V | P | L | E | P | R | A | Y | P | Q | G | L | C | K | S | H | W | G | L | N | E | V | P | C | V | E | S | Y | K | G | L | I | F | G | N | W | D | T | S | A | P | G | L | R | D | Y | L | G | D | I | A | W | Y | L | D | G | M | L | D | R
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | R | E | G | G | T | E | I | V | G | G | V | Q | K | W | V | I | N | C | N | W | K | F | P | A | E | Q | F | A | S | D | Q | Y | H | A | L | F | S | H | A | S | A | V | Q | V | L | G | A | K | D | D | G | S | D | K | R | L | G | D | G | Q
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | T | A | R | P | V | W | E | T | A | K | D | A | L | Q | F | G | Q | D | G | H | G | S | G | F | F | F | T | E | K | P | D | A | N | V | W | V | D | G | A | V | S | S | Y | Y | R | E | T | Y | A | E | A | E | Q | R | L | G | E | V | R | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360
Sequence |  | L | R | L | A | G | H | N | N | I | F | P | T | L | S | W | L | N | G | T | A | T | L | R | V | W | H | P | R | G | P | D | Q | V | E | V | W | A | F | C | I | T | D | K | A | A | S | D | E | V | K | A | A | F | E | N | S | A | T | R | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420
Sequence |  | F | G | P | A | G | F | L | E | Q | D | D | S | E | N | W | C | E | I | Q | K | L | L | K | G | H | R | A | R | N | S | K | L | C | L | E | M | G | L | G | Q | E | K | R | R | D | D | G | I | P | G | I | T | N | Y | I | F | S | E | T | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | .
Sequence |  | A | R | G | M | Y | Q | R | W | A | D | L | L | S | S | E | S | W | Q | E | V | L | D | K | T | A | A | Y | Q | Q | E | V | M | K
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c2gbxE_ |

### PDB 2gbx chain E

Region: 12 - 447
Aligned: 428
Modelled: 430
Confidence: 100.0%
Identity: 38%
PDB header:oxidoreductase
Chain: E: PDB Molecule:biphenyl 2,3-dioxygenase alpha subunit;
PDBTitle: crystal structure of biphenyl 2,3-dioxygenase from sphingomonas2 yanoikuyae b1 bound to biphenyl

Phyre2
2 |
| c2hmnA_ |

### PDB 2hmn chain A

Region: 8 - 453
Aligned: 439
Modelled: 446
Confidence: 100.0%
Identity: 36%
PDB header:oxidoreductase
Chain: A: PDB Molecule:naphthalene 1,2-dioxygenase alpha subunit;
PDBTitle: crystal structure of the naphthalene 1,2-dioxygenase f352v2 mutant bound to anthracene.

Phyre2
3 |
| c1wqlA_ |

### PDB 1wql chain A

Region: 5 - 440
Aligned: 427
Modelled: 436
Confidence: 100.0%
Identity: 44%
PDB header:oxidoreductase
Chain: A: PDB Molecule:iron-sulfur protein large subunit of cumene dioxygenase;
PDBTitle: cumene dioxygenase (cuma1a2) from pseudomonas fluorescens ip01

Phyre2
4 |
| c1uljA_ |

### PDB 1ulj chain A

Region: 5 - 441
Aligned: 417
Modelled: 419
Confidence: 100.0%
Identity: 48%
PDB header:oxidoreductase
Chain: A: PDB Molecule:biphenyl dioxygenase large subunit;
PDBTitle: biphenyl dioxygenase (bpha1a2) in complex with the substrate

Phyre2
5 |
| c2b1xE_ |

### PDB 2b1x chain E

Region: 14 - 436
Aligned: 409
Modelled: 409
Confidence: 100.0%
Identity: 39%
PDB header:oxidoreductase
Chain: E: PDB Molecule:naphthalene dioxygenase large subunit;
PDBTitle: crystal structure of naphthalene 1,2-dioxygenase from rhodococcus sp.

Phyre2
6 |
| c3n0qA_ |

### PDB 3n0q chain A

Region: 5 - 437
Aligned: 397
Modelled: 407
Confidence: 100.0%
Identity: 22%
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative aromatic-ring hydroxylating dioxygenase;
PDBTitle: crystal structure of a putative aromatic-ring hydroxylating2 dioxygenase (tm1040_3219) from silicibacter sp. tm1040 at 1.80 a3 resolution

Phyre2
7 |
| d1o7na2 |

### PDB 1o7n chain A domain 2

Region: 159 - 453
Aligned: 287
Modelled: 295
Confidence: 100.0%
Identity: 30%
Fold: TBP-like
Superfamily: Bet v1-like
Family: Ring hydroxylating alpha subunit catalytic domain

Phyre2
8 |
| d1wqla2 |

### PDB 1wql chain A domain 2

Region: 160 - 440
Aligned: 273
Modelled: 273
Confidence: 100.0%
Identity: 38%
Fold: TBP-like
Superfamily: Bet v1-like
Family: Ring hydroxylating alpha subunit catalytic domain

Phyre2
9 |
| d2bmoa2 |

### PDB 2bmo chain A domain 2

Region: 159 - 447
Aligned: 281
Modelled: 289
Confidence: 100.0%
Identity: 30%
Fold: TBP-like
Superfamily: Bet v1-like
Family: Ring hydroxylating alpha subunit catalytic domain

Phyre2
10 |
| d1ulia2 |

### PDB 1uli chain A domain 2

Region: 160 - 440
Aligned: 262
Modelled: 262
Confidence: 100.0%
Identity: 44%
Fold: TBP-like
Superfamily: Bet v1-like
Family: Ring hydroxylating alpha subunit catalytic domain

Phyre2
11 |
| d2b1xa2 |

### PDB 2b1x chain A domain 2

Region: 160 - 436
Aligned: 263
Modelled: 263
Confidence: 100.0%
Identity: 34%
Fold: TBP-like
Superfamily: Bet v1-like
Family: Ring hydroxylating alpha subunit catalytic domain

Phyre2
12 |
| c3gteB_ |

### PDB 3gte chain B

Region: 40 - 438
Aligned: 322
Modelled: 341
Confidence: 100.0%
Identity: 16%
PDB header:electron transport, oxidoreductase
Chain: B: PDB Molecule:ddmc;
PDBTitle: crystal structure of dicamba monooxygenase with non-heme2 iron

Phyre2
13 |
| c3gkqB_ |

### PDB 3gkq chain B

Region: 33 - 434
Aligned: 347
Modelled: 355
Confidence: 100.0%
Identity: 16%
PDB header:oxidoreductase
Chain: B: PDB Molecule:terminal oxygenase component of carbazole 1,9a-
PDBTitle: terminal oxygenase of carbazole 1,9a-dioxygenase from2 novosphingobium sp. ka1

Phyre2
14 |
| c3gcfC_ |

### PDB 3gcf chain C

Region: 33 - 434
Aligned: 346
Modelled: 365
Confidence: 100.0%
Identity: 18%
PDB header:oxidoreductase
Chain: C: PDB Molecule:terminal oxygenase component of carbazole 1,9a-
PDBTitle: terminal oxygenase of carbazole 1,9a-dioxygenase from2 nocardioides aromaticivorans ic177

Phyre2
15 |
| d1wqla1 |

### PDB 1wql chain A domain 1

Region: 5 - 159
Aligned: 154
Modelled: 155
Confidence: 100.0%
Identity: 56%
Fold: ISP domain
Superfamily: ISP domain
Family: Ring hydroxylating alpha subunit ISP domain

Phyre2
16 |
| c1z01D_ |

### PDB 1z01 chain D

Region: 31 - 434
Aligned: 354
Modelled: 376
Confidence: 100.0%
Identity: 16%
PDB header:oxidoreductase
Chain: D: PDB Molecule:2-oxo-1,2-dihydroquinoline 8-monooxygenase,
PDBTitle: 2-oxoquinoline 8-monooxygenase component: active site2 modulation by rieske-[2fe-2s] center oxidation/reduction

Phyre2
17 |
| d2b1xa1 |

### PDB 2b1x chain A domain 1

Region: 15 - 159
Aligned: 145
Modelled: 145
Confidence: 100.0%
Identity: 48%
Fold: ISP domain
Superfamily: ISP domain
Family: Ring hydroxylating alpha subunit ISP domain

Phyre2
18 |
| d1ulia1 |

### PDB 1uli chain A domain 1

Region: 5 - 159
Aligned: 153
Modelled: 155
Confidence: 100.0%
Identity: 58%
Fold: ISP domain
Superfamily: ISP domain
Family: Ring hydroxylating alpha subunit ISP domain

Phyre2
19 |
| d2bmoa1 |

### PDB 2bmo chain A domain 1

Region: 11 - 158
Aligned: 148
Modelled: 148
Confidence: 100.0%
Identity: 47%
Fold: ISP domain
Superfamily: ISP domain
Family: Ring hydroxylating alpha subunit ISP domain

Phyre2
20 |
| c2zylA_ |

### PDB 2zyl chain A

Region: 38 - 443
Aligned: 320
Modelled: 348
Confidence: 100.0%
Identity: 16%
PDB header:oxidoreductase
Chain: A: PDB Molecule:possible oxidoreductase;
PDBTitle: crystal structure of 3-ketosteroid-9-alpha-hydroxylase2 (ksha) from m. tuberculosis

Phyre2
21 |
22 |
23 |
24 |
25 |
26 |
27 |
28 |
29 |
30 |
31 |
32 |
33 |
34 |
35 |
36 |
37 |
38 |
39 |
40 |
41 |
42 |
43 |
44 |
45 |
46 |
47 |
48 |
49 |
50 |
51 |
52 |
53 |
54 |
55 |
56 |
57 |
58 |
59 |
60 |
61 |
62 |
63 |
64 |
65 |
66 |
67 |
68 |
69 |
70 |
71 |
72 |
73 |
74 |
75 |
76 |
77 |
78 |
79 |
80 |
81 |
82 |
83 |
84 |
85 |
86 |
87 |
88 |
89 |
90 |
91 |
92 |
93 |
94 |
95 |
96 |
97 |
98 |
99 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c2gbxE_ |
|  | 100.0 | 38 | PDB header:oxidoreductase Chain: E: PDB Molecule:biphenyl 2,3-dioxygenase alpha subunit; PDBTitle: crystal structure of biphenyl 2,3-dioxygenase from sphingomonas2 yanoikuyae b1 bound to biphenyl
2 | c2hmnA_ |
|  | 100.0 | 36 | PDB header:oxidoreductase Chain: A: PDB Molecule:naphthalene 1,2-dioxygenase alpha subunit; PDBTitle: crystal structure of the naphthalene 1,2-dioxygenase f352v2 mutant bound to anthracene.
3 | c1wqlA_ |
|  | 100.0 | 44 | PDB header:oxidoreductase Chain: A: PDB Molecule:iron-sulfur protein large subunit of cumene dioxygenase; PDBTitle: cumene dioxygenase (cuma1a2) from pseudomonas fluorescens ip01
4 | c1uljA_ |
|  | 100.0 | 48 | PDB header:oxidoreductase Chain: A: PDB Molecule:biphenyl dioxygenase large subunit; PDBTitle: biphenyl dioxygenase (bpha1a2) in complex with the substrate
5 | c2b1xE_ |
|  | 100.0 | 39 | PDB header:oxidoreductase Chain: E: PDB Molecule:naphthalene dioxygenase large subunit; PDBTitle: crystal structure of naphthalene 1,2-dioxygenase from rhodococcus sp.
6 | c3n0qA_ |
|  | 100.0 | 22 | PDB header:oxidoreductase Chain: A: PDB Molecule:putative aromatic-ring hydroxylating dioxygenase; PDBTitle: crystal structure of a putative aromatic-ring hydroxylating2 dioxygenase (tm1040_3219) from silicibacter sp. tm1040 at 1.80 a3 resolution
7 | d1o7na2 |
|  | 100.0 | 30 | Fold:TBP-like Superfamily:Bet v1-like Family:Ring hydroxylating alpha subunit catalytic domain
8 | d1wqla2 |
|  | 100.0 | 38 | Fold:TBP-like Superfamily:Bet v1-like Family:Ring hydroxylating alpha subunit catalytic domain
9 | d2bmoa2 |
|  | 100.0 | 30 | Fold:TBP-like Superfamily:Bet v1-like Family:Ring hydroxylating alpha subunit catalytic domain
10 | d1ulia2 |
|  | 100.0 | 44 | Fold:TBP-like Superfamily:Bet v1-like Family:Ring hydroxylating alpha subunit catalytic domain
11 | d2b1xa2 |
|  | 100.0 | 34 | Fold:TBP-like Superfamily:Bet v1-like Family:Ring hydroxylating alpha subunit catalytic domain
12 | c3gteB_ |
|  | 100.0 | 16 | PDB header:electron transport, oxidoreductase Chain: B: PDB Molecule:ddmc; PDBTitle: crystal structure of dicamba monooxygenase with non-heme2 iron
13 | c3gkqB_ |
|  | 100.0 | 16 | PDB header:oxidoreductase Chain: B: PDB Molecule:terminal oxygenase component of carbazole 1,9a- PDBTitle: terminal oxygenase of carbazole 1,9a-dioxygenase from2 novosphingobium sp. ka1
14 | c3gcfC_ |
|  | 100.0 | 18 | PDB header:oxidoreductase Chain: C: PDB Molecule:terminal oxygenase component of carbazole 1,9a- PDBTitle: terminal oxygenase of carbazole 1,9a-dioxygenase from2 nocardioides aromaticivorans ic177
15 | d1wqla1 |
|  | 100.0 | 56 | Fold:ISP domain Superfamily:ISP domain Family:Ring hydroxylating alpha subunit ISP domain
16 | c1z01D_ |
|  | 100.0 | 16 | PDB header:oxidoreductase Chain: D: PDB Molecule:2-oxo-1,2-dihydroquinoline 8-monooxygenase, PDBTitle: 2-oxoquinoline 8-monooxygenase component: active site2 modulation by rieske-[2fe-2s] center oxidation/reduction
17 | d2b1xa1 |
|  | 100.0 | 48 | Fold:ISP domain Superfamily:ISP domain Family:Ring hydroxylating alpha subunit ISP domain
18 | d1ulia1 |
|  | 100.0 | 58 | Fold:ISP domain Superfamily:ISP domain Family:Ring hydroxylating alpha subunit ISP domain
19 | d2bmoa1 |
|  | 100.0 | 47 | Fold:ISP domain Superfamily:ISP domain Family:Ring hydroxylating alpha subunit ISP domain
20 | c2zylA_ |
|  | 100.0 | 16 | PDB header:oxidoreductase Chain: A: PDB Molecule:possible oxidoreductase; PDBTitle: crystal structure of 3-ketosteroid-9-alpha-hydroxylase2 (ksha) from m. tuberculosis
21 | c2de7B_ |
| not modelled | 100.0 | 17 | PDB header:oxidoreductase Chain: B: PDB Molecule:terminal oxygenase component of carbazole; PDBTitle: the substrate-bound complex between oxygenase and2 ferredoxin in carbazole 1,9a-dioxygenase
22 | d1o7na1 |
| not modelled | 100.0 | 46 | Fold:ISP domain Superfamily:ISP domain Family:Ring hydroxylating alpha subunit ISP domain
23 | d1z01a1 |
| not modelled | 100.0 | 21 | Fold:ISP domain Superfamily:ISP domain Family:Ring hydroxylating alpha subunit ISP domain
24 | d2de6a1 |
| not modelled | 100.0 | 25 | Fold:ISP domain Superfamily:ISP domain Family:Ring hydroxylating alpha subunit ISP domain
25 | c3d89A_ |
| not modelled | 99.9 | 16 | PDB header:electron transport Chain: A: PDB Molecule:rieske domain-containing protein; PDBTitle: crystal structure of a soluble rieske ferredoxin from mus musculus
26 | d1vm9a_ |
| not modelled | 99.8 | 21 | Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP)
27 | c2de7E_ |
| not modelled | 99.8 | 21 | PDB header:oxidoreductase Chain: E: PDB Molecule:ferredoxin component of carbazole; PDBTitle: the substrate-bound complex between oxygenase and2 ferredoxin in carbazole 1,9a-dioxygenase
28 | d2jzaa1 |
| not modelled | 99.8 | 14 | Fold:ISP domain Superfamily:ISP domain Family:NirD-like
29 | c3dqyA_ |
| not modelled | 99.8 | 20 | PDB header:oxidoreductase Chain: A: PDB Molecule:toluene 1,2-dioxygenase system ferredoxin PDBTitle: crystal structure of toluene 2,3-dioxygenase ferredoxin
30 | d3c0da1 |
| not modelled | 99.8 | 12 | Fold:ISP domain Superfamily:ISP domain Family:NirD-like
31 | c3gceA_ |
| not modelled | 99.8 | 22 | PDB header:oxidoreductase Chain: A: PDB Molecule:ferredoxin component of carbazole 1,9a- PDBTitle: ferredoxin of carbazole 1,9a-dioxygenase from nocardioides2 aromaticivorans ic177
32 | d1fqta_ |
| not modelled | 99.8 | 16 | Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP)
33 | c2qpzA_ |
| not modelled | 99.8 | 22 | PDB header:metal binding protein Chain: A: PDB Molecule:naphthalene 1,2-dioxygenase system ferredoxin PDBTitle: naphthalene 1,2-dioxygenase rieske ferredoxin
34 | d2jo6a1 |
| not modelled | 99.8 | 14 | Fold:ISP domain Superfamily:ISP domain Family:NirD-like
35 | c2i7fB_ |
| not modelled | 99.7 | 22 | PDB header:oxidoreductase Chain: B: PDB Molecule:ferredoxin component of dioxygenase; PDBTitle: sphingomonas yanoikuyae b1 ferredoxin
36 | d1q90c_ |
| not modelled | 99.6 | 23 | Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP)
37 | d1rfsa_ |
| not modelled | 99.6 | 24 | Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP)
38 | d3cx5e1 |
| not modelled | 99.4 | 28 | Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP)
39 | d2e74d1 |
| not modelled | 99.4 | 22 | Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP)
40 | d1g8kb_ |
| not modelled | 99.4 | 18 | Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP)
41 | d1riea_ |
| not modelled | 99.4 | 23 | Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP)
42 | c2nvgA_ |
| not modelled | 99.3 | 19 | PDB header:oxidoreductase Chain: A: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit; PDBTitle: soluble domain of rieske iron sulfur protein.
43 | c2e76D_ |
| not modelled | 99.0 | 23 | PDB header:photosynthesis Chain: D: PDB Molecule:cytochrome b6-f complex iron-sulfur subunit; PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus
44 | c2fynO_ |
| not modelled | 99.0 | 21 | PDB header:oxidoreductase Chain: O: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex
45 | d1nyka_ |
| not modelled | 98.9 | 24 | Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP)
46 | c2fyuE_ |
| not modelled | 98.8 | 22 | PDB header:oxidoreductase Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit, PDBTitle: crystal structure of bovine heart mitochondrial bc1 with jg1442 inhibitor
47 | c1p84E_ |
| not modelled | 98.3 | 25 | PDB header:oxidoreductase Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur PDBTitle: hdbt inhibited yeast cytochrome bc1 complex
48 | d1z01a2 |
| not modelled | 97.7 | 13 | Fold:TBP-like Superfamily:Bet v1-like Family:Ring hydroxylating alpha subunit catalytic domain
49 | d1jm1a_ |
| not modelled | 97.3 | 25 | Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP)
50 | d2de6a2 |
| not modelled | 96.3 | 17 | Fold:TBP-like Superfamily:Bet v1-like Family:Ring hydroxylating alpha subunit catalytic domain
51 | d1uhva1 |
| not modelled | 31.4 | 28 | Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:Composite domain of glycosyl hydrolase families 5, 30, 39 and 51
52 | c3fcgB_ |
| not modelled | 29.7 | 27 | PDB header:membrane protein, protein transport Chain: B: PDB Molecule:f1 capsule-anchoring protein; PDBTitle: crystal structure analysis of the middle domain of the2 caf1a usher
53 | c3kv0A_ |
| not modelled | 28.3 | 43 | PDB header:transport protein Chain: A: PDB Molecule:het-c2; PDBTitle: crystal structure of het-c2: a fungal glycolipid transfer protein2 (gltp)
54 | d1mkna_ |
| not modelled | 24.1 | 67 | Fold:Midkine Superfamily:Midkine Family:Midkine, a heparin-binding growth factor, N-terminal domain
55 | d1wmxa_ |
| not modelled | 23.9 | 22 | Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:Family 30 carbohydrate binding module, CBM30 (PKD repeat)
56 | d2fu5a1 |
| not modelled | 23.8 | 25 | Fold:Mss4-like Superfamily:Mss4-like Family:RabGEF Mss4
57 | d1pwka_ |
| not modelled | 23.7 | 13 | Fold:DLC Superfamily:DLC Family:DLC
58 | c1ddzA_ |
| not modelled | 23.2 | 42 | PDB header:lyase Chain: A: PDB Molecule:carbonic anhydrase; PDBTitle: x-ray structure of a beta-carbonic anhydrase from the red2 alga, porphyridium purpureum r-1
59 | c1lshB_ |
| not modelled | 22.3 | 19 | PDB header:lipid binding protein Chain: B: PDB Molecule:lipovitellin (lv-2); PDBTitle: lipid-protein interactions in lipovitellin
60 | d1lshb_ |
| not modelled | 22.3 | 19 | Fold:Lipovitellin-phosvitin complex; beta-sheet shell regions Superfamily:Lipovitellin-phosvitin complex; beta-sheet shell regions Family:Lipovitellin-phosvitin complex; beta-sheet shell regions
61 | d1w91a1 |
| not modelled | 22.2 | 50 | Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:Composite domain of glycosyl hydrolase families 5, 30, 39 and 51
62 | d1hxra_ |
| not modelled | 21.5 | 25 | Fold:Mss4-like Superfamily:Mss4-like Family:RabGEF Mss4
63 | d3brda2 |
| not modelled | 18.6 | 35 | Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:p53-like transcription factors Family:DNA-binding protein LAG-1 (CSL)
64 | d1ddza2 |
| not modelled | 18.6 | 42 | Fold:Resolvase-like Superfamily:beta-carbonic anhydrase, cab Family:beta-carbonic anhydrase, cab
65 | c2x3mA_ |
| not modelled | 18.4 | 33 | PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein orf239; PDBTitle: crystal structure of hypothetical protein orf239 from pyrobaculum2 spherical virus
66 | c2wb6A_ |
| not modelled | 18.0 | 16 | PDB header:viral protein Chain: A: PDB Molecule:afv1-102; PDBTitle: crystal structure of afv1-102, a protein from the acidianus2 filamentous virus 1
67 | d3orca_ |
| not modelled | 16.7 | 24 | Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors
68 | c2c3yA_ |
| not modelled | 16.3 | 27 | PDB header:oxidoreductase Chain: A: PDB Molecule:pyruvate-ferredoxin oxidoreductase; PDBTitle: crystal structure of the radical form of2 pyruvate:ferredoxin oxidoreductase from desulfovibrio3 africanus
69 | c3lasA_ |
| not modelled | 15.5 | 29 | PDB header:lyase Chain: A: PDB Molecule:putative carbonic anhydrase; PDBTitle: crystal structure of carbonic anhydrase from streptococcus mutans to2 1.4 angstrom resolution
70 | d1nr3a_ |
| not modelled | 15.3 | 19 | Fold:DNA-binding protein Tfx Superfamily:DNA-binding protein Tfx Family:DNA-binding protein Tfx
71 | c1ylkA_ |
| not modelled | 14.4 | 29 | PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein rv1284/mt1322; PDBTitle: crystal structure of rv1284 from mycobacterium tuberculosis in complex2 with thiocyanate
72 | d1swxa_ |
| not modelled | 14.1 | 80 | Fold:Glycolipid transfer protein, GLTP Superfamily:Glycolipid transfer protein, GLTP Family:Glycolipid transfer protein, GLTP
73 | c2i3fA_ |
| not modelled | 13.5 | 40 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:glycolipid transfer-like protein; PDBTitle: crystal structure of a glycolipid transfer-like protein2 from galdieria sulphuraria
74 | d1cmia_ |
| not modelled | 13.5 | 13 | Fold:DLC Superfamily:DLC Family:DLC
75 | d1e1oa1 |
| not modelled | 13.1 | 20 | Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain
76 | c2lm4A_ |
| not modelled | 13.0 | 38 | PDB header:protein binding Chain: A: PDB Molecule:succinate dehydrogenase assembly factor 2, mitochondrial; PDBTitle: solution nmr structure of mitochondrial succinate dehydrogenase2 assembly factor 2 from saccharomyces cerevisiae, northeast structural3 genomics consortium target yt682a
77 | d2c42a2 |
| not modelled | 13.0 | 27 | Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:PFOR PP module
78 | c2jz8A_ |
| not modelled | 12.6 | 33 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein bh09830; PDBTitle: solution nmr structure of bh09830 from bartonella henselae2 modeled with one zn+2 bound. northeast structural genomics3 consortium target bnr55
79 | c2vpyB_ |
| not modelled | 12.4 | 27 | PDB header:oxidoreductase Chain: B: PDB Molecule:nrfc protein; PDBTitle: polysulfide reductase with bound quinone inhibitor,2 pentachlorophenol (pcp)
80 | c3brgC_ |
| not modelled | 12.2 | 35 | PDB header:dna binding protein/dna Chain: C: PDB Molecule:recombining binding protein suppressor of PDBTitle: csl (rbp-jk) bound to dna
81 | d3cdda1 |
| not modelled | 12.2 | 17 | Fold:Phage tail proteins Superfamily:Phage tail proteins Family:Baseplate protein-like
82 | c3izbP_ |
| not modelled | 12.1 | 60 | PDB header:ribosome Chain: P: PDB Molecule:40s ribosomal protein rps11 (s17p); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
83 | c2a8cE_ |
| not modelled | 11.9 | 50 | PDB header:lyase Chain: E: PDB Molecule:carbonic anhydrase 2; PDBTitle: haemophilus influenzae beta-carbonic anhydrase
84 | c3iz6P_ |
| not modelled | 11.8 | 60 | PDB header:ribosome Chain: P: PDB Molecule:40s ribosomal protein s11 (s17p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
85 | d3e2ba1 |
| not modelled | 11.8 | 13 | Fold:DLC Superfamily:DLC Family:DLC
86 | c2fo1A_ |
| not modelled | 11.6 | 35 | PDB header:gene regulation/signalling protein/dna Chain: A: PDB Molecule:lin-12 and glp-1 phenotype protein 1, isoform b; PDBTitle: crystal structure of the csl-notch-mastermind ternary2 complex bound to dna
87 | d1bbua1 |
| not modelled | 11.4 | 20 | Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain
88 | d1kt0a2 |
| not modelled | 11.2 | 26 | Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase
89 | d1ddza1 |
| not modelled | 10.9 | 43 | Fold:Resolvase-like Superfamily:beta-carbonic anhydrase, cab Family:beta-carbonic anhydrase, cab
90 | c2yrtA_ |
| not modelled | 10.8 | 25 | PDB header:transcription Chain: A: PDB Molecule:chord containing protein-1; PDBTitle: solution structure of the chord domain of human chord-2 containing protein 1
91 | c2w3nA_ |
| not modelled | 10.8 | 32 | PDB header:lyase Chain: A: PDB Molecule:carbonic anhydrase 2; PDBTitle: structure and inhibition of the co2-sensing carbonic2 anhydrase can2 from the pathogenic fungus cryptococcus3 neoformans
92 | d1nfga1 |
| not modelled | 10.6 | 22 | Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:Hydantoinase (dihydropyrimidinase)
93 | d1ubdc4 |
| not modelled | 10.5 | 44 | Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2
94 | d1vmka_ |
| not modelled | 10.4 | 20 | Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases
95 | c3eyxB_ |
| not modelled | 10.2 | 27 | PDB header:lyase Chain: B: PDB Molecule:carbonic anhydrase; PDBTitle: crystal structure of carbonic anhydrase nce103 from2 saccharomyces cerevisiae
96 | d2abxa_ |
| not modelled | 10.2 | 42 | Fold:Snake toxin-like Superfamily:Snake toxin-like Family:Snake venom toxins
97 | d1d1la_ |
| not modelled | 10.2 | 24 | Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors
98 | c2ivfB_ |
| not modelled | 9.6 | 16 | PDB header:oxidoreductase Chain: B: PDB Molecule:ethylbenzene dehydrogenase beta-subunit; PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum
99 | c2xznQ_ |
| not modelled | 9.6 | 40 | PDB header:ribosome Chain: Q: PDB Molecule:ribosomal protein s17 containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0