17/01/2012 04:26:09 : INFO  : Run start: Tue Jan 17 04:26:09 GMT 2012
17/01/2012 04:26:09 : INFO  : Initialised job
17/01/2012 04:26:09 : INFO  : Renaming log file 'phyre2_20120117_042609.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/39a095706115e165/phyre_20120117_042609.log'
17/01/2012 04:26:09 : INFO  : Initialised job:
Sequence
>batch____
MTTPSDLNIYQLIDTQNGRVTPRIYTDPDIYQLELERIFGRCWLFLAHESQIPKPGDFFN
TYMGEDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELID
VPLEPRAYPQGLCKSHWGLNEVPCVESYKGLIFGNWDTSAPGLRDYLGDIAWYLDGMLDR
REGGTEIVGGVQKWVINCNWKFPAEQFASDQYHALFSHASAVQVLGAKDDGSDKRLGDGQ
TARPVWETAKDALQFGQDGHGSGFFFTEKPDANVWVDGAVSSYYRETYAEAEQRLGEVRA
LRLAGHNNIFPTLSWLNGTATLRVWHPRGPDQVEVWAFCITDKAASDEVKAAFENSATRA
FGPAGFLEQDDSENWCEIQKLLKGHRARNSKLCLEMGLGQEKRRDDGIPGITNYIFSETA
ARGMYQRWADLLSSESWQEVLDKTAAYQQEVMK

17/01/2012 04:26:09 : INFO  : Checked sequence
17/01/2012 04:26:09 : INFO  : Finding homologues with PSI-BLAST
17/01/2012 04:26:09 : INFO  : PSI-BLAST 3 iterations
17/01/2012 04:28:18 : INFO  : PSI-BLAST 5 iterations
17/01/2012 04:30:36 : INFO  : Finished PSI-BLAST
17/01/2012 04:30:36 : INFO  : Running Buildali to generate a3m file
17/01/2012 04:39:03 : INFO  : Converting to HMM
17/01/2012 04:39:08 : INFO  : Calibrating HMM
17/01/2012 04:39:21 : INFO  : Searching HMM database
17/01/2012 04:48:30 : INFO  : Finished buildali
17/01/2012 04:48:30 : INFO  : Predicting secondary structure
17/01/2012 04:48:31 : INFO  : Predicted secondary structure (PSI-Pred)
17/01/2012 04:48:31 : INFO  : Predicting Disordered regions
17/01/2012 04:48:31 : INFO  : Predicted Disorder (Disopred)
17/01/2012 04:48:31 : INFO  : Running memsat_svm check
17/01/2012 04:52:34 : INFO  : Running memsat_svm full
17/01/2012 04:58:02 : INFO  : Predicted Transmembrane (memsat_svm) ID '39a095706115e165'
17/01/2012 04:58:02 : INFO  : Initialising fold library search
17/01/2012 04:58:02 : INFO  : Initialised search input
17/01/2012 04:58:02 : INFO  : Building Ensemble models
17/01/2012 04:58:02 : INFO  : Building hh.c1wqlA_.model.1.pdb
17/01/2012 04:58:03 : INFO  : Building hh.c2gbxE_.model.2.pdb
17/01/2012 04:58:03 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/39a095706115e165/hh.c2gbxE_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/39a095706115e165/c2gbxE_.1.pdb
17/01/2012 04:58:03 : INFO  : Building hh.c2hmnA_.model.3.pdb
17/01/2012 04:58:04 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/39a095706115e165/hh.c2hmnA_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/39a095706115e165/c2hmnA_.2.pdb
17/01/2012 04:58:04 : INFO  : Building hh.c1uljA_.model.4.pdb
17/01/2012 04:58:04 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/39a095706115e165/hh.c1uljA_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/39a095706115e165/c1uljA_.4.pdb
17/01/2012 04:58:04 : INFO  : Building hh.c2b1xE_.model.5.pdb
17/01/2012 04:58:05 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/39a095706115e165/hh.c2b1xE_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/39a095706115e165/c2b1xE_.5.pdb
17/01/2012 04:58:05 : INFO  : Building c2gbxE_.1.pdb
17/01/2012 04:58:06 : INFO  : Building c2hmnA_.2.pdb
17/01/2012 04:58:06 : INFO  : Building c1wqlA_.3.pdb
17/01/2012 04:58:07 : INFO  : Building c1uljA_.4.pdb
17/01/2012 04:58:07 : INFO  : Building c2b1xE_.5.pdb
17/01/2012 04:58:08 : INFO  : Building c3n0qA_.6.pdb
17/01/2012 04:58:08 : INFO  : Building d1o7na2.7.pdb
17/01/2012 04:58:09 : INFO  : Building d1wqla2.8.pdb
17/01/2012 04:58:09 : INFO  : Building d2bmoa2.9.pdb
17/01/2012 04:58:10 : INFO  : Building d1ulia2.10.pdb
17/01/2012 04:58:10 : INFO  : Building d2b1xa2.11.pdb
17/01/2012 04:58:11 : INFO  : Building c3gteB_.12.pdb
17/01/2012 04:58:11 : INFO  : Building c3gkqB_.13.pdb
17/01/2012 04:58:12 : INFO  : Building c3gcfC_.14.pdb
17/01/2012 04:58:13 : INFO  : Building d1wqla1.15.pdb
17/01/2012 04:58:13 : INFO  : Building c1z01D_.16.pdb
17/01/2012 04:58:14 : INFO  : Building d2b1xa1.17.pdb
17/01/2012 04:58:14 : INFO  : Building d1ulia1.18.pdb
17/01/2012 04:58:15 : INFO  : Building d2bmoa1.19.pdb
17/01/2012 04:58:15 : INFO  : Building c2zylA_.20.pdb
17/01/2012 04:58:31 : INFO  : Finished HH model building
17/01/2012 04:58:31 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
17/01/2012 04:58:40 : INFO  : html domain output complete ID '39a095706115e165'
17/01/2012 06:43:22 : INFO  : Run end  : Tue Jan 17 06:43:22 GMT 2012
