Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	I	K	R	V	L	V	V	S	M	V	G	L	S	L	V	G	C	V	N	N	D	T	L	S	G	D	V	Y	T	A	S	E	A	K	Q	V	Q	N	V	S	Y	G	T	I	V	N	V	R	P	V	Q	I	Q	G	G	D	D	S	N
Secondary structure
SS confidence
Disorder		?	?	?													?			?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?																?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	I	G	A	I	G	G	A	V	L	G	G	F	L	G	N	T	V	G	G	G	T	G	R	S	L	A	T	A	A	G	A	V	A	G	G	V	A	G	Q	G	V	Q	S	A	M	N	K	T	Q	G	V	E	L	E	I	R	K	D	D
Secondary structure
SS confidence
Disorder		?	?														?	?	?		?		?	?																						?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Sequence		G	N	T	I	M	V	V	Q	K	Q	G	N	T	R	F	S	P	G	Q	R	V	V	L	A	S	N	G	S	Q	V	T	V	S	P	R
Secondary structure
SS confidence
Disorder												?	?	?		?												?	?	?				?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2rcn chain A Region: 99 - 155 Aligned: 57 Modelled: 57 Confidence: 59.2% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of the ribosomal interacting gtpase yjeq from the2 enterobacterial species salmonella typhimurium. Phyre2 PDB 2awn chain A domain 1 Region: 112 - 152 Aligned: 41 Modelled: 41 Confidence: 50.2% Identity: 7% Fold: OB-fold Superfamily: MOP-like Family: ABC-transporter additional domain Phyre2 PDB 2lbg chain A Region: 87 - 108 Aligned: 22 Modelled: 22 Confidence: 47.8% Identity: 55% PDB header:membrane protein Chain: A: PDB Molecule:major prion protein; PDBTitle: structure of the chr of the prion protein in dpc micelles Phyre2 PDB 1oxx chain K domain 1 Region: 112 - 152 Aligned: 39 Modelled: 41 Confidence: 46.4% Identity: 13% Fold: OB-fold Superfamily: MOP-like Family: ABC-transporter additional domain Phyre2 PDB 2k14 chain A Region: 113 - 154 Aligned: 42 Modelled: 42 Confidence: 44.3% Identity: 24% PDB header:unknown function Chain: A: PDB Molecule:yuaf protein; PDBTitle: solution structure of the soluble domain of the nfed2 protein yuaf from bacillus subtilis Phyre2 PDB 2gnr chain A domain 1 Region: 115 - 152 Aligned: 36 Modelled: 38 Confidence: 43.1% Identity: 19% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: SSO2064-like Phyre2 PDB 3qz9 chain D Region: 130 - 143 Aligned: 14 Modelled: 14 Confidence: 40.9% Identity: 29% PDB header:lyase Chain: D: PDB Molecule:co-type nitrile hydratase beta subunit; PDBTitle: crystal structure of co-type nitrile hydratase beta-y215f from2 pseudomonas putida. Phyre2 PDB 2dxc chain G Region: 133 - 143 Aligned: 11 Modelled: 11 Confidence: 40.8% Identity: 36% PDB header:hydrolase Chain: G: PDB Molecule:thiocyanate hydrolase subunit alpha; PDBTitle: recombinant thiocyanate hydrolase, fully-matured form Phyre2 PDB 1ugp chain B Region: 130 - 143 Aligned: 14 Modelled: 14 Confidence: 39.9% Identity: 21% Fold: SH3-like barrel Superfamily: Electron transport accessory proteins Family: Nitrile hydratase beta chain Phyre2 PDB 2jvv chain A Region: 131 - 147 Aligned: 17 Modelled: 17 Confidence: 38.8% Identity: 29% PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of e. coli nusg carboxyterminal domain Phyre2 PDB 2kvq chain G Region: 131 - 147 Aligned: 17 Modelled: 17 Confidence: 38.8% Identity: 29% PDB header:transcription Chain: G: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of nuse:nusg-ctd complex Phyre2 PDB 1v29 chain B Region: 130 - 143 Aligned: 14 Modelled: 14 Confidence: 38.7% Identity: 29% Fold: SH3-like barrel Superfamily: Electron transport accessory proteins Family: Nitrile hydratase beta chain Phyre2 PDB 1q1c chain A domain 1 Region: 110 - 145 Aligned: 36 Modelled: 36 Confidence: 38.6% Identity: 22% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 PDB 2e6z chain A Region: 130 - 144 Aligned: 15 Modelled: 15 Confidence: 36.6% Identity: 33% PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5 Phyre2 PDB 1h9m chain B Region: 110 - 154 Aligned: 45 Modelled: 45 Confidence: 33.5% Identity: 20% PDB header:binding protein Chain: B: PDB Molecule:molybdenum-binding-protein; PDBTitle: two crystal structures of the cytoplasmic molybdate-binding2 protein modg suggest a novel cooperative binding mechanism3 and provide insights into ligand-binding specificity.4 peg-grown form with molybdate bound Phyre2 PDB 1npp chain A domain 2 Region: 134 - 147 Aligned: 14 Modelled: 14 Confidence: 31.6% Identity: 21% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: N-utilization substance G protein NusG, C-terminal domain Phyre2 PDB 1nz9 chain A Region: 134 - 146 Aligned: 13 Modelled: 13 Confidence: 30.1% Identity: 31% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: N-utilization substance G protein NusG, C-terminal domain Phyre2 PDB 2qdy chain B domain 1 Region: 133 - 143 Aligned: 11 Modelled: 11 Confidence: 25.6% Identity: 55% Fold: SH3-like barrel Superfamily: Electron transport accessory proteins Family: Nitrile hydratase beta chain Phyre2 PDB 2do3 chain A domain 1 Region: 135 - 146 Aligned: 12 Modelled: 12 Confidence: 25.4% Identity: 25% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: SPT5 KOW domain-like Phyre2 PDB 1h9s chain A Region: 112 - 152 Aligned: 41 Modelled: 41 Confidence: 24.0% Identity: 24% PDB header:transcription regulator Chain: A: PDB Molecule:molybdenum transport protein mode; PDBTitle: molybdate bound complex of dimop domain of mode from e.coli Phyre2 1 c2rcnA_ 2 d2awna1 3 c2lbgA_ 4 d1oxxk1 5 c2k14A_ 6 d2gnra1 7 c3qz9D_ 8 c2dxcG_ 9 d1ugpb_ 10 c2jvvA_ 11 c2kvqG_ 12 d1v29b_ 13 d1q1ca1 14 c2e6zA_ 15 c1h9mB_ 16 d1nppa2 17 d1nz9a_ 18 d2qdyb1 19 d2do3a1 20 c1h9sA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2rcnA_ 59.2 18 PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of the ribosomal interacting gtpase yjeq from the2 enterobacterial species salmonella typhimurium. 2 d2awna1 50.2 7 Fold:OB-fold Superfamily:MOP-like Family:ABC-transporter additional domain 3 c2lbgA_ 47.8 55 PDB header:membrane protein Chain: A: PDB Molecule:major prion protein; PDBTitle: structure of the chr of the prion protein in dpc micelles 4 d1oxxk1 46.4 13 Fold:OB-fold Superfamily:MOP-like Family:ABC-transporter additional domain 5 c2k14A_ 44.3 24 PDB header:unknown function Chain: A: PDB Molecule:yuaf protein; PDBTitle: solution structure of the soluble domain of the nfed2 protein yuaf from bacillus subtilis 6 d2gnra1 43.1 19 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:SSO2064-like 7 c3qz9D_ 40.9 29 PDB header:lyase Chain: D: PDB Molecule:co-type nitrile hydratase beta subunit; PDBTitle: crystal structure of co-type nitrile hydratase beta-y215f from2 pseudomonas putida. 8 c2dxcG_ 40.8 36 PDB header:hydrolase Chain: G: PDB Molecule:thiocyanate hydrolase subunit alpha; PDBTitle: recombinant thiocyanate hydrolase, fully-matured form 9 d1ugpb_ 39.9 21 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain 10 c2jvvA_ 38.8 29 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of e. coli nusg carboxyterminal domain 11 c2kvqG_ 38.8 29 PDB header:transcription Chain: G: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of nuse:nusg-ctd complex 12 d1v29b_ 38.7 29 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain 13 d1q1ca1 38.6 22 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 14 c2e6zA_ 36.6 33 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5 15 c1h9mB_ 33.5 20 PDB header:binding protein Chain: B: PDB Molecule:molybdenum-binding-protein; PDBTitle: two crystal structures of the cytoplasmic molybdate-binding2 protein modg suggest a novel cooperative binding mechanism3 and provide insights into ligand-binding specificity.4 peg-grown form with molybdate bound 16 d1nppa2 31.6 21 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 17 d1nz9a_ 30.1 31 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 18 d2qdyb1 25.6 55 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain 19 d2do3a1 25.4 25 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:SPT5 KOW domain-like 20 c1h9sA_ 24.0 24 PDB header:transcription regulator Chain: A: PDB Molecule:molybdenum transport protein mode; PDBTitle: molybdate bound complex of dimop domain of mode from e.coli 21 d1h9ma1 not modelled 23.8 19 Fold:OB-fold Superfamily:MOP-like Family:BiMOP, duplicated molybdate-binding domain 22 d2zgwa1 not modelled 20.4 43 Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:Biotin repressor (BirA) 23 d2zjrm1 not modelled 19.9 23 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal protein L19 24 d2vv5a1 not modelled 18.8 25 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Mechanosensitive channel protein MscS (YggB), middle domain 25 c3cp0A_ not modelled 18.8 15 PDB header:membrane protein Chain: A: PDB Molecule:membrane protein implicated in regulation of membrane PDBTitle: crystal structure of the soluble domain of membrane protein implicated2 in regulation of membrane protease activity from corynebacterium3 glutamicum 26 d1guta_ not modelled 18.6 15 Fold:OB-fold Superfamily:MOP-like Family:Molybdate/tungstate binding protein MOP 27 c2yv5A_ not modelled 18.0 19 PDB header:hydrolase Chain: A: PDB Molecule:yjeq protein; PDBTitle: crystal structure of yjeq from aquifex aeolicus 28 d1u0la1 not modelled 17.9 19 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 29 d1h9ra1 not modelled 17.4 12 Fold:OB-fold Superfamily:MOP-like Family:BiMOP, duplicated molybdate-binding domain 30 d2jnaa1 not modelled 16.5 20 Fold:Dodecin subunit-like Superfamily:YdgH-like Family:YdgH-like 31 c3zvkG_ not modelled 15.8 21 PDB header:antitoxin/toxin/dna Chain: G: PDB Molecule:antitoxin of toxin-antitoxin system vapb; PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter 32 c3gd7C_ not modelled 15.6 7 PDB header:hydrolase Chain: C: PDB Molecule:fusion complex of cystic fibrosis transmembrane PDBTitle: crystal structure of human nbd2 complexed with n6-2 phenylethyl-atp (p-atp) 33 d1fr3a_ not modelled 15.4 10 Fold:OB-fold Superfamily:MOP-like Family:Molybdate/tungstate binding protein MOP 34 c1rouA_ not modelled 15.3 24 PDB header:rotamase (isomerase) Chain: A: PDB Molecule:fkbp59-i; PDBTitle: structure of fkbp59-i, the n-terminal domain of a 59 kda2 fk506-binding protein, nmr, 22 structures 35 d1h9ma2 not modelled 15.3 20 Fold:OB-fold Superfamily:MOP-like Family:BiMOP, duplicated molybdate-binding domain 36 c2k8iA_ not modelled 14.9 14 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: solution structure of e.coli slyd 37 c2fhdA_ not modelled 14.5 17 PDB header:cell cycle Chain: A: PDB Molecule:dna repair protein rhp9/crb2; PDBTitle: crystal structure of crb2 tandem tudor domains 38 d1ah9a_ not modelled 14.2 14 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 39 c3hfwA_ not modelled 13.6 40 PDB header:hydrolase Chain: A: PDB Molecule:protein adp-ribosylarginine hydrolase; PDBTitle: crystal structure of human adp-ribosylhydrolase 1 (harh1) 40 d1h9ra2 not modelled 13.5 24 Fold:OB-fold Superfamily:MOP-like Family:BiMOP, duplicated molybdate-binding domain 41 c2kfwA_ not modelled 12.6 14 PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase PDBTitle: solution structure of full-length slyd from e.coli 42 c3i4oA_ not modelled 12.6 21 PDB header:translation Chain: A: PDB Molecule:translation initiation factor if-1; PDBTitle: crystal structure of translation initiation factor 1 from2 mycobacterium tuberculosis 43 c4a2iV_ not modelled 11.5 16 PDB header:ribosome/hydrolase Chain: V: PDB Molecule:putative ribosome biogenesis gtpase rsga; PDBTitle: cryo-electron microscopy structure of the 30s subunit in complex with2 the yjeq biogenesis factor 44 d1pkla3 not modelled 11.3 15 Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:Pyruvate kinase, C-terminal domain 45 d1fdra1 not modelled 11.2 11 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 46 d1hh2p1 not modelled 11.0 15 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 47 d2cowa1 not modelled 11.0 13 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 48 d1v6ga2 not modelled 9.8 42 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 49 c3zv0D_ not modelled 9.2 11 PDB header:cell cycle Chain: D: PDB Molecule:h/aca ribonucleoprotein complex subunit 4; PDBTitle: structure of the shq1p-cbf5p complex 50 c3jt0B_ not modelled 8.8 29 PDB header:structural protein Chain: B: PDB Molecule:lamin-b1; PDBTitle: crystal structure of the c-terminal fragment (426-558)2 lamin-b1 from homo sapiens, northeast structural genomics3 consortium target hr5546a 51 d2asba1 not modelled 8.7 14 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 52 c2qtyB_ not modelled 8.6 50 PDB header:hydrolase Chain: B: PDB Molecule:poly(adp-ribose) glycohydrolase arh3; PDBTitle: crystal structure of mouse adp-ribosylhydrolase 3 (marh3) 53 d1v43a2 not modelled 8.4 21 Fold:OB-fold Superfamily:MOP-like Family:ABC-transporter additional domain 54 d1t5ja_ not modelled 8.3 50 Fold:ADP-ribosylglycohydrolase Superfamily:ADP-ribosylglycohydrolase Family:ADP-ribosylglycohydrolase 55 d1uufa1 not modelled 8.1 26 Fold:GroES-like Superfamily:GroES-like Family:Alcohol dehydrogenase-like, N-terminal domain 56 d1whha_ not modelled 7.7 19 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 57 c2e12B_ not modelled 7.2 17 PDB header:translation Chain: B: PDB Molecule:hypothetical protein xcc3642; PDBTitle: the crystal structure of xc5848 from xanthomonas campestris2 adopting a novel variant of sm-like motif 58 d1e2wa2 not modelled 7.1 23 Fold:Barrel-sandwich hybrid Superfamily:Rudiment single hybrid motif Family:Cytochrome f, small domain 59 d3d31a1 not modelled 6.9 24 Fold:OB-fold Superfamily:MOP-like Family:ABC-transporter additional domain 60 c1zeqX_ not modelled 6.8 14 PDB header:metal binding protein Chain: X: PDB Molecule:cation efflux system protein cusf; PDBTitle: 1.5 a structure of apo-cusf residues 6-88 from escherichia2 coli 61 c2wocA_ not modelled 6.7 35 PDB header:hydrolase Chain: A: PDB Molecule:adp-ribosyl-[dinitrogen reductase] glycohydrolase; PDBTitle: crystal structure of the dinitrogenase reductase-activating2 glycohydrolase (drag) from rhodospirillum rubrum 62 c2yzwA_ not modelled 6.6 30 PDB header:hydrolase Chain: A: PDB Molecule:adp-ribosylglycohydrolase; PDBTitle: adp-ribosylglycohydrolase-related protein complex 63 c1m1gB_ not modelled 6.6 18 PDB header:transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of aquifex aeolicus n-utilization2 substance g (nusg), space group p2(1) 64 c3k6oA_ not modelled 6.6 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein duf1344; PDBTitle: crystal structure of protein of unknown function duf13442 (yp_001299214.1) from bacteroides vulgatus atcc 8482 at 2.00 a3 resolution 65 d2gycn1 not modelled 6.6 27 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal protein L19 66 d2q07a1 not modelled 6.5 20 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain 67 c1u0lB_ not modelled 6.4 17 PDB header:hydrolase Chain: B: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of yjeq from thermotoga maritima 68 d2qqsa2 not modelled 6.4 23 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:Tudor domain 69 d1whka_ not modelled 6.1 27 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 70 c1vciA_ not modelled 6.0 18 PDB header:transport protein Chain: A: PDB Molecule:sugar-binding transport atp-binding protein; PDBTitle: crystal structure of the atp-binding cassette of multisugar2 transporter from pyrococcus horikoshii ot3 complexed with3 atp 71 d2coya1 not modelled 5.9 20 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 72 c2vv5D_ not modelled 5.9 25 PDB header:membrane protein Chain: D: PDB Molecule:small-conductance mechanosensitive channel; PDBTitle: the open structure of mscs 73 d1iq8a3 not modelled 5.8 11 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain 74 c3g9dB_ not modelled 5.7 35 PDB header:hydrolase Chain: B: PDB Molecule:dinitrogenase reductase activacting PDBTitle: crystal structure glycohydrolase 75 d1i4ma_ not modelled 5.6 33 Fold:Prion-like Superfamily:Prion-like Family:Prion-like 76 c2kr7A_ not modelled 5.6 14 PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase slyd; PDBTitle: solution structure of helicobacter pylori slyd 77 d2ccwa1 not modelled 5.4 10 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 78 c2k5hA_ not modelled 5.3 26 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein; PDBTitle: solution nmr structure of protein encoded by mth693 from2 methanobacterium thermoautotrophicum: northeast structural3 genomics consortium target tt824a 79 d1r9ha_ not modelled 5.3 17 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 80 d1tova_ not modelled 5.3 11 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 81 d1g2914 not modelled 5.3 24 Fold:OB-fold Superfamily:MOP-like Family:ABC-transporter additional domain 82 c3k8rA_ not modelled 5.3 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein of unknown function (yp_427503.1) from2 rhodospirillum rubrum atcc 11170 at 2.75 a resolution 83 d1ex4a1 not modelled 5.2 33 Fold:SH3-like barrel Superfamily:DNA-binding domain of retroviral integrase Family:DNA-binding domain of retroviral integrase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0