PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3k6oA_

Fold library id	PDB Header	Molecule	Title
c3k6oA_	PDB header: structural genomics, unknown function	Chain: A: PDB Molecule: uncharacterized protein duf1344;	PDBTitle: crystal structure of protein of unknown function duf13442 (yp_001299214.1) from bacteroides vulgatus atcc 8482 at3 2.00 a resolution

Links to external resources
Added to library: Sat Aug 28 16:25:36 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T V T I A X A T V E K Q P Q Y D A P Y L V L D N G E K L W V V Q H I V P Y R D L K A G E R I F G N Y S F L E A G E S G F A Y N I R L N D Y T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S S
T T S
S S
T T
T T
S T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L V P V Q K I I G L N P D N X D S I G N X K V Q I K D X W P S D D Y L N V R F X L N F P S P Q K P I L N L V V N E X I P W T K D G Y A H L E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
B
B
S S
S S S
T T S
S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L R Y N N N G S Q G R L V P G X V S F K L D D Y S P E N S E L K G I K V L V N P V D G E E K T Y I F S Y P L T G E D V P G F N P L D L A E L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
G G G S T T
T T
S
B S S S S
S S
S T T
T T

.

Sequence K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	V	T	I	A	X	A	T	V	E	K	Q	P	Q	Y	D	A	P	Y	L	V	L	D	N	G	E	K	L	W	V	V	Q	H	I	V	P	Y	R	D	L	K	A	G	E	R	I	F	G	N	Y	S	F	L	E	A	G	E	S	G	F	A	Y	N	I	R	L	N	D	Y	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	T	S	S	S						T	T	S									S	S			T	T			T	T														S	T	T		S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	V	P	V	Q	K	I	I	G	L	N	P	D	N	X	D	S	I	G	N	X	K	V	Q	I	K	D	X	W	P	S	D	D	Y	L	N	V	R	F	X	L	N	F	P	S	P	Q	K	P	I	L	N	L	V	V	N	E	X	I	P	W	T	K	D	G	Y	A	H	L	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	T	T							B		B									S	S												S	S	S										T	T	S				S	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	R	Y	N	N	N	G	S	Q	G	R	L	V	P	G	X	V	S	F	K	L	D	D	Y	S	P	E	N	S	E	L	K	G	I	K	V	L	V	N	P	V	D	G	E	E	K	T	Y	I	F	S	Y	P	L	T	G	E	D	V	P	G	F	N	P	L	D	L	A	E	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T															G	G	G	S	T	T		T	T		S								B	S	S	S	S								S	S			S	T	T											T	T
	.
Sequence	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)