Phyre 2 alignment of P0A905 with d1u0la1

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Job Description | P0A905
Confidence | 17.89% | Date | Thu Jan 5 11:09:05 GMT 2012
Rank | 28 | Aligned Residues | 42
% Identity | 19% | Template | d1u0la1
SCOP info | OB-fold | Nucleic acid-binding proteins | Cold shock DNA-binding domain-like
Resolution | 2.80

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 114 | . | . | . | . | . | 120 |  | . | . | . | . | . | . | . | . | . | 130 | . |  |  |  |  | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . |  |  |  |  | 150 | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |
Query Sequence |  | L | E | I | R | K | D | D | . | G | N | T | I | M | V | V | Q | K | Q | G | . | . | . | . | N | T | R | F | S | P | G | Q | R | V | V | L | A | S | N | G | S | Q | . | . | . | . | V | T | V | S | P | R
Query Conservation |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | V | T | V | E | D | E | E | T | G | E | R | I | L | C | K | L | R | G | K | F | R | L | Q | N | L | K | I | Y | V | G | D | R | V | E | Y | T | P | D | E | T | G | S | G | V | I | E | N | V | L | H | R
Template Known Secondary structure |  |  |  |  |  |  | T | T | T |  |  |  |  |  |  |  |  |  | G | G | G | T | T | T | T |  |  |  |  | T | T |  |  |  |  |  |  |  |  |  | S | S | S |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 17 | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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