Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	V	E	N	N	N	V	S	G	Q	N	H	D	P	E	Q	I	D	L	I	D	L	L	V	Q	L	W	R	G	K	M	T	I	I	I	S	V	I	V	A	I	A	L	A	I	G	Y	L	A	V	A	K	E	K	W	T	S	T	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?																																						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		I	I	T	Q	P	D	V	G	Q	I	A	G	Y	N	N	A	M	N	V	I	Y	G	Q	A	A	P	K	V	S	D	L	Q	E	T	L	I	G	R	F	S	S	A	F	S	A	L	A	E	T	L	D	N	Q	E	E	R	E	K	L	T
Secondary structure
SS confidence
Disorder				?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?													?	?	?	?		?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		I	E	P	S	V	K	N	Q	Q	L	P	L	T	V	S	Y	V	G	Q	T	A	E	G	A	Q	M	K	L	A	Q	Y	I	Q	Q	V	D	D	K	V	N	Q	E	L	E	K	D	L	K	D	N	I	A	L	G	R	K	N	L	Q	D
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?									?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		S	L	R	T	Q	E	V	V	A	Q	E	Q	K	D	L	R	I	R	Q	I	Q	E	A	L	Q	Y	A	N	Q	A	Q	V	T	K	P	Q	I	Q	Q	T	G	E	D	I	T	Q	D	T	L	F	L	L	G	S	E	A	L	E	S	M
Secondary structure
SS confidence
Disorder																															?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?			?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		I	K	H	E	A	T	R	P	L	V	F	S	P	N	Y	Y	Q	T	R	Q	N	L	L	D	I	E	S	L	K	V	D	D	L	D	I	H	A	Y	R	Y	V	M	K	P	M	L	P	I	R	R	D	S	P	K	K	A	I	T	L	I
Secondary structure
SS confidence
Disorder						?	?	?	?	?	?	?	?															?	?	?	?	?	?	?	?									?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Sequence		L	A	V	L	L	G	G	M	V	G	A	G	I	V	L	G	R	N	A	L	R	N	Y	N	A	K
Secondary structure
SS confidence
Disorder																						?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3b8p chain A domain 1 Region: 55 - 293 Aligned: 206 Modelled: 206 Confidence: 99.7% Identity: 70% Fold: Ferredoxin-like Superfamily: Bacterial polysaccharide co-polymerase-like Family: FepE-like Phyre2 PDB 3b8m chain A domain 1 Region: 55 - 287 Aligned: 228 Modelled: 233 Confidence: 99.6% Identity: 19% Fold: Ferredoxin-like Superfamily: Bacterial polysaccharide co-polymerase-like Family: FepE-like Phyre2 PDB 3b8o chain A domain 1 Region: 55 - 291 Aligned: 202 Modelled: 200 Confidence: 99.3% Identity: 24% Fold: Ferredoxin-like Superfamily: Bacterial polysaccharide co-polymerase-like Family: FepE-like Phyre2 PDB 2qts chain A Region: 289 - 320 Aligned: 32 Modelled: 32 Confidence: 60.8% Identity: 13% PDB header:membrane protein Chain: A: PDB Molecule:acid-sensing ion channel; PDBTitle: structure of an acid-sensing ion channel 1 at 1.9 a resolution and low2 ph Phyre2 PDB 2rmz chain A Region: 287 - 316 Aligned: 28 Modelled: 30 Confidence: 56.3% Identity: 21% PDB header:cell adhesion Chain: A: PDB Molecule:integrin beta-3; PDBTitle: bicelle-embedded integrin beta3 transmembrane segment Phyre2 PDB 2yl4 chain A Region: 19 - 51 Aligned: 33 Modelled: 33 Confidence: 46.2% Identity: 9% PDB header:membrane protein Chain: A: PDB Molecule:atp-binding cassette sub-family b member 10, PDBTitle: structure of the human mitochondrial abc transporter, abcb10 Phyre2 PDB 2k1k chain A Region: 290 - 325 Aligned: 36 Modelled: 36 Confidence: 42.2% Identity: 31% PDB header:signaling protein Chain: A: PDB Molecule:ephrin type-a receptor 1; PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3 Phyre2 PDB 2k1l chain B Region: 290 - 325 Aligned: 36 Modelled: 36 Confidence: 42.2% Identity: 31% PDB header:signaling protein Chain: B: PDB Molecule:ephrin type-a receptor 1; PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 6.3 Phyre2 PDB 2k1k chain B Region: 290 - 325 Aligned: 36 Modelled: 36 Confidence: 42.2% Identity: 31% PDB header:signaling protein Chain: B: PDB Molecule:ephrin type-a receptor 1; PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3 Phyre2 PDB 2k1l chain A Region: 300 - 325 Aligned: 26 Modelled: 26 Confidence: 42.0% Identity: 38% PDB header:signaling protein Chain: A: PDB Molecule:ephrin type-a receptor 1; PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 6.3 Phyre2 PDB 2hyd chain A domain 2 Region: 20 - 51 Aligned: 32 Modelled: 32 Confidence: 41.8% Identity: 19% Fold: ABC transporter transmembrane region Superfamily: ABC transporter transmembrane region Family: ABC transporter transmembrane region Phyre2 PDB 1rhz chain B Region: 257 - 322 Aligned: 61 Modelled: 66 Confidence: 35.3% Identity: 15% Fold: Single transmembrane helix Superfamily: Preprotein translocase SecE subunit Family: Preprotein translocase SecE subunit Phyre2 PDB 3ij4 chain A Region: 289 - 311 Aligned: 23 Modelled: 23 Confidence: 33.4% Identity: 13% PDB header:transport protein Chain: A: PDB Molecule:amiloride-sensitive cation channel 2, neuronal; PDBTitle: cesium sites in the crystal structure of a functional acid2 sensing ion channel in the desensitized state Phyre2 PDB 3hd7 chain A Region: 25 - 51 Aligned: 27 Modelled: 27 Confidence: 33.0% Identity: 15% PDB header:exocytosis Chain: A: PDB Molecule:vesicle-associated membrane protein 2; PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1 Phyre2 PDB 1pf4 chain A domain 2 Region: 19 - 51 Aligned: 33 Modelled: 33 Confidence: 30.7% Identity: 15% Fold: ABC transporter transmembrane region Superfamily: ABC transporter transmembrane region Family: ABC transporter transmembrane region Phyre2 PDB 2hyd chain B Region: 20 - 51 Aligned: 32 Modelled: 32 Confidence: 29.1% Identity: 19% PDB header:transport protein Chain: B: PDB Molecule:abc transporter homolog; PDBTitle: multidrug abc transporter sav1866 Phyre2 PDB 2knc chain A Region: 31 - 52 Aligned: 22 Modelled: 22 Confidence: 25.5% Identity: 9% PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex Phyre2 PDB 1v54 chain D Region: 283 - 320 Aligned: 38 Modelled: 38 Confidence: 25.0% Identity: 13% Fold: Single transmembrane helix Superfamily: Mitochondrial cytochrome c oxidase subunit IV Family: Mitochondrial cytochrome c oxidase subunit IV Phyre2 PDB 2y69 chain Q Region: 283 - 320 Aligned: 38 Modelled: 38 Confidence: 24.4% Identity: 13% PDB header:electron transport Chain: Q: PDB Molecule:cytochrome c oxidase subunit 4 isoform 1; PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular2 oxygen Phyre2 PDB 3g5u chain B Region: 18 - 53 Aligned: 36 Modelled: 36 Confidence: 22.0% Identity: 6% PDB header:membrane protein Chain: B: PDB Molecule:multidrug resistance protein 1a; PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding Phyre2 1 d3b8pa1 2 d3b8ma1 3 d3b8oa1 4 c2qtsA_ 5 c2rmzA_ 6 c2yl4A_ 7 c2k1kA_ 8 c2k1lB_ 9 c2k1kB_ 10 c2k1lA_ 11 d2hyda2 12 d1rhzb_ 13 c3ij4A_ 14 c3hd7A_ 15 d1pf4a2 16 c2hydB_ 17 c2kncA_ 18 d1v54d_ 19 c2y69Q_ 20 c3g5uB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d3b8pa1 99.7 70 Fold:Ferredoxin-like Superfamily:Bacterial polysaccharide co-polymerase-like Family:FepE-like 2 d3b8ma1 99.6 19 Fold:Ferredoxin-like Superfamily:Bacterial polysaccharide co-polymerase-like Family:FepE-like 3 d3b8oa1 99.3 24 Fold:Ferredoxin-like Superfamily:Bacterial polysaccharide co-polymerase-like Family:FepE-like 4 c2qtsA_ 60.8 13 PDB header:membrane protein Chain: A: PDB Molecule:acid-sensing ion channel; PDBTitle: structure of an acid-sensing ion channel 1 at 1.9 a resolution and low2 ph 5 c2rmzA_ 56.3 21 PDB header:cell adhesion Chain: A: PDB Molecule:integrin beta-3; PDBTitle: bicelle-embedded integrin beta3 transmembrane segment 6 c2yl4A_ 46.2 9 PDB header:membrane protein Chain: A: PDB Molecule:atp-binding cassette sub-family b member 10, PDBTitle: structure of the human mitochondrial abc transporter, abcb10 7 c2k1kA_ 42.2 31 PDB header:signaling protein Chain: A: PDB Molecule:ephrin type-a receptor 1; PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3 8 c2k1lB_ 42.2 31 PDB header:signaling protein Chain: B: PDB Molecule:ephrin type-a receptor 1; PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 6.3 9 c2k1kB_ 42.2 31 PDB header:signaling protein Chain: B: PDB Molecule:ephrin type-a receptor 1; PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3 10 c2k1lA_ 42.0 38 PDB header:signaling protein Chain: A: PDB Molecule:ephrin type-a receptor 1; PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 6.3 11 d2hyda2 41.8 19 Fold:ABC transporter transmembrane region Superfamily:ABC transporter transmembrane region Family:ABC transporter transmembrane region 12 d1rhzb_ 35.3 15 Fold:Single transmembrane helix Superfamily:Preprotein translocase SecE subunit Family:Preprotein translocase SecE subunit 13 c3ij4A_ 33.4 13 PDB header:transport protein Chain: A: PDB Molecule:amiloride-sensitive cation channel 2, neuronal; PDBTitle: cesium sites in the crystal structure of a functional acid2 sensing ion channel in the desensitized state 14 c3hd7A_ 33.0 15 PDB header:exocytosis Chain: A: PDB Molecule:vesicle-associated membrane protein 2; PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1 15 d1pf4a2 30.7 15 Fold:ABC transporter transmembrane region Superfamily:ABC transporter transmembrane region Family:ABC transporter transmembrane region 16 c2hydB_ 29.1 19 PDB header:transport protein Chain: B: PDB Molecule:abc transporter homolog; PDBTitle: multidrug abc transporter sav1866 17 c2kncA_ 25.5 9 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 18 d1v54d_ 25.0 13 Fold:Single transmembrane helix Superfamily:Mitochondrial cytochrome c oxidase subunit IV Family:Mitochondrial cytochrome c oxidase subunit IV 19 c2y69Q_ 24.4 13 PDB header:electron transport Chain: Q: PDB Molecule:cytochrome c oxidase subunit 4 isoform 1; PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular2 oxygen 20 c3g5uB_ 22.0 6 PDB header:membrane protein Chain: B: PDB Molecule:multidrug resistance protein 1a; PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding 21 d3b60a2 not modelled 21.4 19 Fold:ABC transporter transmembrane region Superfamily:ABC transporter transmembrane region Family:ABC transporter transmembrane region 22 c1vf5R_ not modelled 20.1 22 PDB header:photosynthesis Chain: R: PDB Molecule:protein pet l; PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus 23 c2e74E_ not modelled 20.1 22 PDB header:photosynthesis Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6; PDBTitle: crystal structure of the cytochrome b6f complex from m.laminosus 24 c2e75E_ not modelled 20.1 22 PDB header:photosynthesis Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6; PDBTitle: crystal structure of the cytochrome b6f complex with 2-nonyl-4-2 hydroxyquinoline n-oxide (nqno) from m.laminosus 25 d2e74e1 not modelled 20.1 22 Fold:Single transmembrane helix Superfamily:PetL subunit of the cytochrome b6f complex Family:PetL subunit of the cytochrome b6f complex 26 c2e76E_ not modelled 20.1 22 PDB header:photosynthesis Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6; PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus 27 d1nwaa_ not modelled 19.5 31 Fold:Ferredoxin-like Superfamily:Peptide methionine sulfoxide reductase Family:Peptide methionine sulfoxide reductase 28 c1nwaA_ not modelled 19.5 31 PDB header:oxidoreductase Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msra; PDBTitle: structure of mycobacterium tuberculosis methionine2 sulfoxide reductase a in complex with protein-bound3 methionine 29 c2y69Z_ not modelled 19.0 27 PDB header:electron transport Chain: Z: PDB Molecule:cytochrome c oxidase polypeptide 8h; PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular2 oxygen 30 c2yvxD_ not modelled 18.5 3 PDB header:transport protein Chain: D: PDB Molecule:mg2+ transporter mgte; PDBTitle: crystal structure of magnesium transporter mgte 31 c1vf5E_ not modelled 18.3 24 PDB header:photosynthesis Chain: E: PDB Molecule:protein pet l; PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus 32 d2axth1 not modelled 18.3 27 Fold:Single transmembrane helix Superfamily:Photosystem II 10 kDa phosphoprotein PsbH Family:PsbH-like 33 d1v54m_ not modelled 17.9 27 Fold:Single transmembrane helix Superfamily:Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Family:Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) 34 d1v54l_ not modelled 16.5 19 Fold:Single transmembrane helix Superfamily:Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) Family:Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) 35 c2j89A_ not modelled 15.8 31 PDB header:oxidoreductase Chain: A: PDB Molecule:methionine sulfoxide reductase a; PDBTitle: functional and structural aspects of poplar cytosolic and2 plastidial type a methionine sulfoxide reductases 36 c3bqhA_ not modelled 15.1 31 PDB header:oxidoreductase Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msra/msrb; PDBTitle: structure of the central domain (msra) of neisseria meningitidis pilb2 (oxidized form) 37 c3k07A_ not modelled 14.8 0 PDB header:transport protein Chain: A: PDB Molecule:cation efflux system protein cusa; PDBTitle: crystal structure of cusa 38 d2r6gf1 not modelled 14.4 12 Fold:MalF N-terminal region-like Superfamily:MalF N-terminal region-like Family:MalF N-terminal region-like 39 c3b5wE_ not modelled 13.2 16 PDB header:membrane protein Chain: E: PDB Molecule:lipid a export atp-binding/permease protein msba; PDBTitle: crystal structure of eschericia coli msba 40 c1fvaA_ not modelled 13.0 38 PDB header:oxidoreductase Chain: A: PDB Molecule:peptide methionine sulfoxide reductase; PDBTitle: crystal structure of bovine methionine sulfoxide reductase 41 d1ff3c_ not modelled 12.4 38 Fold:Ferredoxin-like Superfamily:Peptide methionine sulfoxide reductase Family:Peptide methionine sulfoxide reductase 42 d1xrda1 not modelled 11.9 15 Fold:Light-harvesting complex subunits Superfamily:Light-harvesting complex subunits Family:Light-harvesting complex subunits 43 d1ff3a_ not modelled 11.3 35 Fold:Ferredoxin-like Superfamily:Peptide methionine sulfoxide reductase Family:Peptide methionine sulfoxide reductase 44 c3pilA_ not modelled 11.1 31 PDB header:oxidoreductase Chain: A: PDB Molecule:peptide methionine sulfoxide reductase; PDBTitle: crystal structure of mxr1 from saccharomyces cerevisiae in reduced2 form 45 c2o01L_ not modelled 10.5 20 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem i reaction center subunit xi, PDBTitle: the structure of a plant photosystem i supercomplex at 3.42 angstrom resolution 46 d1fvga_ not modelled 10.3 35 Fold:Ferredoxin-like Superfamily:Peptide methionine sulfoxide reductase Family:Peptide methionine sulfoxide reductase 47 c2kncB_ not modelled 10.2 12 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 48 c1qcrD_ not modelled 10.2 12 PDB header: PDB COMPND: 49 c2k21A_ not modelled 10.2 14 PDB header:membrane protein Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e PDBTitle: nmr structure of human kcne1 in lmpg micelles at ph 6.0 and2 40 degree c 50 c3b5xB_ not modelled 10.2 16 PDB header:membrane protein Chain: B: PDB Molecule:lipid a export atp-binding/permease protein msba; PDBTitle: crystal structure of msba from vibrio cholerae 51 c3e0mB_ not modelled 10.0 25 PDB header:oxidoreductase Chain: B: PDB Molecule:peptide methionine sulfoxide reductase msra/msrb PDBTitle: crystal structure of fusion protein of msra and msrb 52 c3cwbQ_ not modelled 9.9 9 PDB header:oxidoreductase Chain: Q: PDB Molecule:mitochondrial cytochrome c1, heme protein; PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d 53 d2e74d2 not modelled 9.3 22 Fold:Single transmembrane helix Superfamily:ISP transmembrane anchor Family:ISP transmembrane anchor 54 c1kveA_ not modelled 8.8 27 PDB header:toxin Chain: A: PDB Molecule:smk toxin; PDBTitle: killer toxin from halotolerant yeast 55 c2k1aA_ not modelled 8.8 25 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment 56 c1ps9A_ not modelled 8.7 20 PDB header:oxidoreductase Chain: A: PDB Molecule:2,4-dienoyl-coa reductase; PDBTitle: the crystal structure and reaction mechanism of e. coli 2,4-2 dienoyl coa reductase 57 c1zrtD_ not modelled 8.6 18 PDB header:oxidoreductase/metal transport Chain: D: PDB Molecule:cytochrome c1; PDBTitle: rhodobacter capsulatus cytochrome bc1 complex with2 stigmatellin bound 58 c1m2zE_ not modelled 8.0 44 PDB header:hormone/hormone activator Chain: E: PDB Molecule:nuclear receptor coactivator 2; PDBTitle: crystal structure of a dimer complex of the human2 glucocorticoid receptor ligand-binding domain bound to3 dexamethasone and a tif2 coactivator motif 59 c1p84D_ not modelled 8.0 12 PDB header:oxidoreductase Chain: D: PDB Molecule:cytochrome c1, heme protein; PDBTitle: hdbt inhibited yeast cytochrome bc1 complex 60 d1rh5b_ not modelled 7.8 18 Fold:Single transmembrane helix Superfamily:Preprotein translocase SecE subunit Family:Preprotein translocase SecE subunit 61 c2y69Y_ not modelled 7.7 17 PDB header:electron transport Chain: Y: PDB Molecule:cytochrome c oxidase subunit 7c; PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular2 oxygen 62 d1pw4a_ not modelled 7.4 8 Fold:MFS general substrate transporter Superfamily:MFS general substrate transporter Family:Glycerol-3-phosphate transporter 63 d1ylfa1 not modelled 7.3 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Transcriptional regulator Rrf2 64 c1m2zB_ not modelled 7.2 44 PDB header:hormone/hormone activator Chain: B: PDB Molecule:nuclear receptor coactivator 2; PDBTitle: crystal structure of a dimer complex of the human2 glucocorticoid receptor ligand-binding domain bound to3 dexamethasone and a tif2 coactivator motif 65 d1xmec1 not modelled 7.2 32 Fold:Single transmembrane helix Superfamily:Bacterial ba3 type cytochrome c oxidase subunit IIa Family:Bacterial ba3 type cytochrome c oxidase subunit IIa 66 d1jb0l_ not modelled 7.1 8 Fold:Photosystem I reaction center subunit XI, PsaL Superfamily:Photosystem I reaction center subunit XI, PsaL Family:Photosystem I reaction center subunit XI, PsaL 67 c3ipdB_ not modelled 7.1 15 PDB header:exocytosis Chain: B: PDB Molecule:syntaxin-1a; PDBTitle: helical extension of the neuronal snare complex into the2 membrane, spacegroup i 21 21 21 68 d2e74g1 not modelled 7.1 23 Fold:Single transmembrane helix Superfamily:PetG subunit of the cytochrome b6f complex Family:PetG subunit of the cytochrome b6f complex 69 c3ixzB_ not modelled 7.1 25 PDB header:hydrolase Chain: B: PDB Molecule:potassium-transporting atpase subunit beta; PDBTitle: pig gastric h+/k+-atpase complexed with aluminium fluoride 70 c1vf5G_ not modelled 7.0 23 PDB header:photosynthesis Chain: G: PDB Molecule:protein pet g; PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus 71 d1vf5g_ not modelled 7.0 23 Fold:Single transmembrane helix Superfamily:PetG subunit of the cytochrome b6f complex Family:PetG subunit of the cytochrome b6f complex 72 c2l2tA_ not modelled 7.0 11 PDB header:membrane protein Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-4; PDBTitle: solution nmr structure of the erbb4 dimeric membrane domain 73 c3p5nA_ not modelled 7.0 18 PDB header:transport protein Chain: A: PDB Molecule:riboflavin uptake protein; PDBTitle: structure and mechanism of the s component of a bacterial ecf2 transporter 74 d1xd7a_ not modelled 6.8 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Transcriptional regulator Rrf2 75 c1ql1A_ not modelled 6.8 11 PDB header:virus Chain: A: PDB Molecule:pf1 bacteriophage coat protein b; PDBTitle: inovirus (filamentous bacteriophage) strain pf1 major coat2 protein assembly 76 c3m9bK_ not modelled 6.7 27 PDB header:chaperone Chain: K: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of the amino terminal coiled coil domain and the2 inter domain of the mycobacterium tuberculosis proteasomal atpase mpa 77 d1kqfb2 not modelled 6.6 17 Fold:Single transmembrane helix Superfamily:Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor Family:Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor 78 c2kluA_ not modelled 6.6 24 PDB header:immune system, membrane protein Chain: A: PDB Molecule:t-cell surface glycoprotein cd4; PDBTitle: nmr structure of the transmembrane and cytoplasmic domains2 of human cd4 79 c3b8eB_ not modelled 6.6 27 PDB header:hydrolase/transport protein Chain: B: PDB Molecule:sodium/potassium-transporting atpase subunit PDBTitle: crystal structure of the sodium-potassium pump 80 d1otsa_ not modelled 6.5 13 Fold:Clc chloride channel Superfamily:Clc chloride channel Family:Clc chloride channel 81 c3lwfD_ not modelled 6.5 44 PDB header:transcription regulator Chain: D: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator (np_470886.1)2 from listeria innocua at 2.06 a resolution 82 c2lbgA_ not modelled 6.5 27 PDB header:membrane protein Chain: A: PDB Molecule:major prion protein; PDBTitle: structure of the chr of the prion protein in dpc micelles 83 c2kb1A_ not modelled 6.5 6 PDB header:membrane protein Chain: A: PDB Molecule:wsk3; PDBTitle: nmr studies of a channel protein without membrane:2 structure and dynamics of water-solubilized kcsa 84 c3ghfA_ not modelled 6.3 13 PDB header:cell cycle Chain: A: PDB Molecule:septum site-determining protein minc; PDBTitle: crystal structure of the septum site-determining protein2 minc from salmonella typhimurium 85 c3k69A_ not modelled 6.2 21 PDB header:transcription Chain: A: PDB Molecule:putative transcription regulator; PDBTitle: crystal structure of a putative transcriptional regulator (lp_0360)2 from lactobacillus plantarum at 1.95 a resolution 86 c2ht2B_ not modelled 6.2 13 PDB header:membrane protein Chain: B: PDB Molecule:h(+)/cl(-) exchange transporter clca; PDBTitle: structure of the escherichia coli clc chloride channel2 y445h mutant and fab complex 87 c2y75F_ not modelled 6.2 25 PDB header:transcription Chain: F: PDB Molecule:hth-type transcriptional regulator cymr; PDBTitle: the structure of cymr (yrzc) the global cysteine regulator2 of b. subtilis 88 d2nr9a1 not modelled 6.1 23 Fold:Rhomboid-like Superfamily:Rhomboid-like Family:Rhomboid-like 89 c2wscL_ not modelled 6.1 15 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem i reaction center subunit xi, PDBTitle: improved model of plant photosystem i 90 c1amlA_ not modelled 6.0 44 PDB header:serine protease inhibitor Chain: A: PDB Molecule:amyloid a4; PDBTitle: the alzheimer`s disease amyloid a4 peptide (residues 1-40) 91 c3n4xB_ not modelled 5.9 6 PDB header:replication Chain: B: PDB Molecule:monopolin complex subunit csm1; PDBTitle: structure of csm1 full-length 92 d2yvxa3 not modelled 5.9 3 Fold:MgtE membrane domain-like Superfamily:MgtE membrane domain-like Family:MgtE membrane domain-like 93 d1reoa1 not modelled 5.8 11 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain 94 c3mp7A_ not modelled 5.7 18 PDB header:protein transport Chain: A: PDB Molecule:preprotein translocase subunit secy; PDBTitle: lateral opening of a translocon upon entry of protein suggests the2 mechanism of insertion into membranes 95 c2onkC_ not modelled 5.7 6 PDB header:membrane protein Chain: C: PDB Molecule:molybdate/tungstate abc transporter, permease PDBTitle: abc transporter modbc in complex with its binding protein2 moda 96 d2onkc1 not modelled 5.7 6 Fold:MetI-like Superfamily:MetI-like Family:MetI-like 97 d1fftb2 not modelled 5.6 13 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 98 c3a0hX_ not modelled 5.6 33 PDB header:electron transport Chain: X: PDB Molecule:photosystem ii reaction center protein x; PDBTitle: crystal structure of i-substituted photosystem ii complex 99 c3a0hx_ not modelled 5.6 33 PDB header:electron transport Chain: X: PDB Molecule:photosystem ii reaction center protein x; PDBTitle: crystal structure of i-substituted photosystem ii complex

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0