Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP75931
DateThu Jan 5 12:16:06 GMT 2012
Unique Job ID347424216538e865

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1tltB_
Top template information
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative oxidoreductase (virulence factor mvim homolog);
PDBTitle: crystal structure of a putative oxidoreductase (virulence factor mvim2 homolog)
Confidence and coverage
Confidence:100.0% Coverage: 99%
305 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MKKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSL
Secondary structure 















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Disorder  ???
























































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   .........70.........80.........90.........100.........110.........120
Sequence  AASCDAVFVHSSTASHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLTLMVG
Secondary structure 























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   .........130.........140.........150.........160.........170.........180
Sequence  FNRRFAPLYGELKTQLATAASLRMDKHRSNSVGPHDLYFTLLDDYLHVVDTALWLSGGKA
Secondary structure 























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Disorder 






























?
?

























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   .........190.........200.........210.........220.........230.........240
Sequence  SLDGGTLLTNDAGEMLFAEHHFSAGPLQITTCMHRRAGSQRETVQAVTDGALIDITDMRE
Secondary structure 




















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?




















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   .........250.........260.........270.........280.........290.........300
Sequence  WREERGQGVVHKPIPGWQSTLEQRGFVGCARHFIECVQNQTVPQTAGEQAVLAQRIVDKI
Secondary structure 


























SS confidence 



























































Disorder 



??
????
















































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   .......
Sequence  WRDAMSE
Secondary structure 

SS confidence 






Disorder 



???
Disorder confidence 






 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1tlt chain B

3D model

Region: 3 - 307
Aligned: 305
Modelled: 305
Confidence: 100.0%
Identity: 100%
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative oxidoreductase (virulence factor mvim homolog);
PDBTitle: crystal structure of a putative oxidoreductase (virulence factor mvim2 homolog)

Phyre2

PDB 3uuw chain B

3D model

Region: 2 - 303
Aligned: 302
Modelled: 302
Confidence: 100.0%
Identity: 39%
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative oxidoreductase with nad(p)-binding rossmann-fold
PDBTitle: 1.63 angstrom resolution crystal structure of dehydrogenase (mvim)2 from clostridium difficile.

Phyre2

PDB 3m2t chain A

3D model

Region: 1 - 305
Aligned: 305
Modelled: 305
Confidence: 100.0%
Identity: 19%
PDB header:oxidoreductase
Chain: A: PDB Molecule:probable dehydrogenase;
PDBTitle: the crystal structure of dehydrogenase from chromobacterium2 violaceum

Phyre2

PDB 3euw chain B

3D model

Region: 1 - 306
Aligned: 304
Modelled: 305
Confidence: 100.0%
Identity: 16%
PDB header:oxidoreductase
Chain: B: PDB Molecule:myo-inositol dehydrogenase;
PDBTitle: crystal structure of a myo-inositol dehydrogenase from corynebacterium2 glutamicum atcc 13032

Phyre2

PDB 1ofg chain F

3D model

Region: 2 - 306
Aligned: 303
Modelled: 305
Confidence: 100.0%
Identity: 18%
PDB header:oxidoreductase
Chain: F: PDB Molecule:glucose-fructose oxidoreductase;
PDBTitle: glucose-fructose oxidoreductase

Phyre2

PDB 1h6d chain L

3D model

Region: 2 - 306
Aligned: 303
Modelled: 305
Confidence: 100.0%
Identity: 18%
PDB header:protein translocation
Chain: L: PDB Molecule:precursor form of glucose-fructose
PDBTitle: oxidized precursor form of glucose-fructose oxidoreductase2 from zymomonas mobilis complexed with glycerol

Phyre2

PDB 3e18 chain A

3D model

Region: 1 - 306
Aligned: 303
Modelled: 301
Confidence: 100.0%
Identity: 18%
PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase;
PDBTitle: crystal structure of nad-binding protein from listeria innocua

Phyre2

PDB 3moi chain A

3D model

Region: 3 - 306
Aligned: 301
Modelled: 301
Confidence: 100.0%
Identity: 18%
PDB header:oxidoreductase
Chain: A: PDB Molecule:probable dehydrogenase;
PDBTitle: the crystal structure of the putative dehydrogenase from bordetella2 bronchiseptica rb50

Phyre2

PDB 3e9m chain C

3D model

Region: 2 - 303
Aligned: 297
Modelled: 301
Confidence: 100.0%
Identity: 16%
PDB header:oxidoreductase
Chain: C: PDB Molecule:oxidoreductase, gfo/idh/moca family;
PDBTitle: crystal structure of an oxidoreductase from enterococcus2 faecalis

Phyre2

PDB 3ezy chain B

3D model

Region: 4 - 306
Aligned: 302
Modelled: 303
Confidence: 100.0%
Identity: 23%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:dehydrogenase;
PDBTitle: crystal structure of probable dehydrogenase tm_0414 from2 thermotoga maritima

Phyre2

PDB 3rbv chain A

3D model

Region: 2 - 306
Aligned: 302
Modelled: 303
Confidence: 100.0%
Identity: 21%
PDB header:sugar binding protein
Chain: A: PDB Molecule:sugar 3-ketoreductase;
PDBTitle: crystal structure of kijd10, a 3-ketoreductase from actinomadura2 kijaniata incomplex with nadp

Phyre2

PDB 3q2k chain B

3D model

Region: 2 - 306
Aligned: 299
Modelled: 305
Confidence: 100.0%
Identity: 17%
PDB header:oxidoreductase
Chain: B: PDB Molecule:oxidoreductase;
PDBTitle: crystal structure of the wlba dehydrogenase from bordetella pertussis2 in complex with nadh and udp-glcnaca

Phyre2

PDB 3oqb chain F

3D model

Region: 2 - 306
Aligned: 305
Modelled: 305
Confidence: 100.0%
Identity: 17%
PDB header:oxidoreductase
Chain: F: PDB Molecule:oxidoreductase;
PDBTitle: crystal structure of putative oxidoreductase from bradyrhizobium2 japonicum usda 110

Phyre2

PDB 3nt5 chain B

3D model

Region: 1 - 306
Aligned: 304
Modelled: 306
Confidence: 100.0%
Identity: 19%
PDB header:oxidoreductase
Chain: B: PDB Molecule:inositol 2-dehydrogenase/d-chiro-inositol 3-dehydrogenase;
PDBTitle: crystal structure of myo-inositol dehydrogenase from bacillus subtilis2 with bound cofactor and product inosose

Phyre2

PDB 2glx chain D

3D model

Region: 5 - 306
Aligned: 300
Modelled: 302
Confidence: 100.0%
Identity: 16%
PDB header:oxidoreductase
Chain: D: PDB Molecule:1,5-anhydro-d-fructose reductase;
PDBTitle: crystal structure analysis of bacterial 1,5-af reductase

Phyre2

PDB 1xea chain D

3D model

Region: 3 - 307
Aligned: 303
Modelled: 303
Confidence: 100.0%
Identity: 24%
PDB header:oxidoreductase
Chain: D: PDB Molecule:oxidoreductase, gfo/idh/moca family;
PDBTitle: crystal structure of a gfo/idh/moca family oxidoreductase2 from vibrio cholerae

Phyre2

PDB 3db2 chain C

3D model

Region: 2 - 307
Aligned: 303
Modelled: 306
Confidence: 100.0%
Identity: 14%
PDB header:oxidoreductase
Chain: C: PDB Molecule:putative nadph-dependent oxidoreductase;
PDBTitle: crystal structure of a putative nadph-dependent oxidoreductase2 (dhaf_2064) from desulfitobacterium hafniense dcb-2 at 1.70 a3 resolution

Phyre2

PDB 3cea chain A

3D model

Region: 2 - 306
Aligned: 305
Modelled: 298
Confidence: 100.0%
Identity: 16%
PDB header:oxidoreductase
Chain: A: PDB Molecule:myo-inositol 2-dehydrogenase;
PDBTitle: crystal structure of myo-inositol 2-dehydrogenase (np_786804.1) from2 lactobacillus plantarum at 2.40 a resolution

Phyre2

PDB 1zh8 chain B

3D model

Region: 2 - 307
Aligned: 293
Modelled: 294
Confidence: 100.0%
Identity: 19%
PDB header:oxidoreductase
Chain: B: PDB Molecule:oxidoreductase;
PDBTitle: crystal structure of oxidoreductase (tm0312) from thermotoga maritima2 at 2.50 a resolution

Phyre2

PDB 3fd8 chain A

3D model

Region: 3 - 305
Aligned: 302
Modelled: 296
Confidence: 100.0%
Identity: 15%
PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase, gfo/idh/moca family;
PDBTitle: crystal structure of an oxidoreductase from enterococcus2 faecalis

Phyre2
1

c1tltB_
2

c3uuwB_
3

c3m2tA_
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c3euwB_
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c1ofgF_
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c1h6dL_
7

c3e18A_
8

c3moiA_
9

c3e9mC_
10

c3ezyB_
11

c3rbvA_
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c3q2kB_
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c3oqbF_
14

c3nt5B_
15

c2glxD_
16

c1xeaD_
17

c3db2C_
18

c3ceaA_
19

c1zh8B_
20

c3fd8A_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1tltB_



100.0 100 PDB header:oxidoreductase
Chain: B: PDB Molecule:putative oxidoreductase (virulence factor mvim homolog);
PDBTitle: crystal structure of a putative oxidoreductase (virulence factor mvim2 homolog)
2c3uuwB_



100.0 39 PDB header:oxidoreductase
Chain: B: PDB Molecule:putative oxidoreductase with nad(p)-binding rossmann-fold
PDBTitle: 1.63 angstrom resolution crystal structure of dehydrogenase (mvim)2 from clostridium difficile.
3c3m2tA_



100.0 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:probable dehydrogenase;
PDBTitle: the crystal structure of dehydrogenase from chromobacterium2 violaceum
4c3euwB_



100.0 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:myo-inositol dehydrogenase;
PDBTitle: crystal structure of a myo-inositol dehydrogenase from corynebacterium2 glutamicum atcc 13032
5c1ofgF_



100.0 18 PDB header:oxidoreductase
Chain: F: PDB Molecule:glucose-fructose oxidoreductase;
PDBTitle: glucose-fructose oxidoreductase
6c1h6dL_



100.0 18 PDB header:protein translocation
Chain: L: PDB Molecule:precursor form of glucose-fructose
PDBTitle: oxidized precursor form of glucose-fructose oxidoreductase2 from zymomonas mobilis complexed with glycerol
7c3e18A_



100.0 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase;
PDBTitle: crystal structure of nad-binding protein from listeria innocua
8c3moiA_



100.0 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:probable dehydrogenase;
PDBTitle: the crystal structure of the putative dehydrogenase from bordetella2 bronchiseptica rb50
9c3e9mC_



100.0 16 PDB header:oxidoreductase
Chain: C: PDB Molecule:oxidoreductase, gfo/idh/moca family;
PDBTitle: crystal structure of an oxidoreductase from enterococcus2 faecalis
10c3ezyB_



100.0 23 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:dehydrogenase;
PDBTitle: crystal structure of probable dehydrogenase tm_0414 from2 thermotoga maritima
11c3rbvA_



100.0 21 PDB header:sugar binding protein
Chain: A: PDB Molecule:sugar 3-ketoreductase;
PDBTitle: crystal structure of kijd10, a 3-ketoreductase from actinomadura2 kijaniata incomplex with nadp
12c3q2kB_



100.0 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:oxidoreductase;
PDBTitle: crystal structure of the wlba dehydrogenase from bordetella pertussis2 in complex with nadh and udp-glcnaca
13c3oqbF_



100.0 17 PDB header:oxidoreductase
Chain: F: PDB Molecule:oxidoreductase;
PDBTitle: crystal structure of putative oxidoreductase from bradyrhizobium2 japonicum usda 110
14c3nt5B_



100.0 19 PDB header:oxidoreductase
Chain: B: PDB Molecule:inositol 2-dehydrogenase/d-chiro-inositol 3-dehydrogenase;
PDBTitle: crystal structure of myo-inositol dehydrogenase from bacillus subtilis2 with bound cofactor and product inosose
15c2glxD_



100.0 16 PDB header:oxidoreductase
Chain: D: PDB Molecule:1,5-anhydro-d-fructose reductase;
PDBTitle: crystal structure analysis of bacterial 1,5-af reductase
16c1xeaD_



100.0 24 PDB header:oxidoreductase
Chain: D: PDB Molecule:oxidoreductase, gfo/idh/moca family;
PDBTitle: crystal structure of a gfo/idh/moca family oxidoreductase2 from vibrio cholerae
17c3db2C_



100.0 14 PDB header:oxidoreductase
Chain: C: PDB Molecule:putative nadph-dependent oxidoreductase;
PDBTitle: crystal structure of a putative nadph-dependent oxidoreductase2 (dhaf_2064) from desulfitobacterium hafniense dcb-2 at 1.70 a3 resolution
18c3ceaA_



100.0 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:myo-inositol 2-dehydrogenase;
PDBTitle: crystal structure of myo-inositol 2-dehydrogenase (np_786804.1) from2 lactobacillus plantarum at 2.40 a resolution
19c1zh8B_



100.0 19 PDB header:oxidoreductase
Chain: B: PDB Molecule:oxidoreductase;
PDBTitle: crystal structure of oxidoreductase (tm0312) from thermotoga maritima2 at 2.50 a resolution
20c3fd8A_



100.0 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase, gfo/idh/moca family;
PDBTitle: crystal structure of an oxidoreductase from enterococcus2 faecalis
21c3evnA_



not modelled 100.0 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase, gfo/idh/moca family;
PDBTitle: crystal structure of putative oxidoreductase from streptococcus2 agalactiae 2603v/r
22c3dtyA_



not modelled 100.0 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase, gfo/idh/moca family;
PDBTitle: crystal structure of an oxidoreductase from pseudomonas2 syringae
23c1evjC_



not modelled 100.0 18 PDB header:oxidoreductase
Chain: C: PDB Molecule:glucose-fructose oxidoreductase;
PDBTitle: crystal structure of glucose-fructose oxidoreductase (gfor)2 delta1-22 s64d
24c2o48X_



not modelled 100.0 20 PDB header:oxidoreductase
Chain: X: PDB Molecule:dimeric dihydrodiol dehydrogenase;
PDBTitle: crystal structure of mammalian dimeric dihydrodiol dehydrogenase
25c3ec7C_



not modelled 100.0 15 PDB header:oxidoreductase
Chain: C: PDB Molecule:putative dehydrogenase;
PDBTitle: crystal structure of putative dehydrogenase from salmonella2 typhimurium lt2
26c3kuxA_



not modelled 100.0 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative oxidoreductase;
PDBTitle: structure of the ypo2259 putative oxidoreductase from yersinia pestis
27c3gfgB_



not modelled 100.0 15 PDB header:oxidoreductase
Chain: B: PDB Molecule:uncharacterized oxidoreductase yvaa;
PDBTitle: structure of putative oxidoreductase yvaa from bacillus subtilis in2 triclinic form
28c3v5nA_



not modelled 100.0 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase;
PDBTitle: the crystal structure of oxidoreductase from sinorhizobium meliloti
29c2p2sA_



not modelled 100.0 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative oxidoreductase;
PDBTitle: crystal structure of putative oxidoreductase (yp_050235.1) from2 erwinia carotovora atroseptica scri1043 at 1.25 a resolution
30c2q4eB_



not modelled 100.0 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:probable oxidoreductase at4g09670;
PDBTitle: ensemble refinement of the protein crystal structure of gene product2 from arabidopsis thaliana at4g09670
31c3btuD_



not modelled 100.0 15 PDB header:transcription
Chain: D: PDB Molecule:galactose/lactose metabolism regulatory protein
PDBTitle: crystal structure of the super-repressor mutant of gal80p2 from saccharomyces cerevisiae; gal80(s2) [e351k]
32c3f4lF_



not modelled 100.0 16 PDB header:oxidoreductase
Chain: F: PDB Molecule:putative oxidoreductase yhhx;
PDBTitle: crystal structure of a probable oxidoreductase yhhx in2 triclinic form. northeast structural genomics target er647
33c3e82A_



not modelled 100.0 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative oxidoreductase;
PDBTitle: crystal structure of a putative oxidoreductase from2 klebsiella pneumoniae
34c3fhlC_



not modelled 100.0 15 PDB header:oxidoreductase
Chain: C: PDB Molecule:putative oxidoreductase;
PDBTitle: crystal structure of a putative oxidoreductase from bacteroides2 fragilis nctc 9343
35c2ho3D_



not modelled 100.0 15 PDB header:oxidoreductase
Chain: D: PDB Molecule:oxidoreductase, gfo/idh/moca family;
PDBTitle: crystal structure of oxidoreductase, gfo/idh/moca family from2 streptococcus pneumoniae
36c2ixaA_



not modelled 100.0 14 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-n-acetylgalactosaminidase;
PDBTitle: a-zyme, n-acetylgalactosaminidase
37c2nvwB_



not modelled 100.0 15 PDB header:transcription
Chain: B: PDB Molecule:galactose/lactose metabolism regulatory protein
PDBTitle: crystal sctucture of transcriptional regulator gal80p from2 kluyveromymes lactis
38c3ip3D_



not modelled 100.0 15 PDB header:oxidoreductase
Chain: D: PDB Molecule:oxidoreductase, putative;
PDBTitle: structure of putative oxidoreductase (tm_0425) from2 thermotoga maritima
39c3c1aB_



not modelled 100.0 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:putative oxidoreductase;
PDBTitle: crystal structure of a putative oxidoreductase (zp_00056571.1) from2 magnetospirillum magnetotacticum ms-1 at 1.85 a resolution
40c1lc3A_



not modelled 100.0 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:biliverdin reductase a;
PDBTitle: crystal structure of a biliverdin reductase enzyme-cofactor2 complex
41c3oa2B_



not modelled 100.0 12 PDB header:oxidoreductase
Chain: B: PDB Molecule:wbpb;
PDBTitle: crystal structure of the wlba (wbpb) dehydrogenase from pseudomonas2 aeruginosa in complex with nad at 1.5 angstrom resolution
42c3oa0B_



not modelled 100.0 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:lipopolysaccaride biosynthesis protein wbpb;
PDBTitle: crystal structure of the wlba (wbpb) dehydrogenase from thermus2 thermophilus in complex with nad and udp-glcnaca
43d1h6da1



not modelled 100.0 22 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
44d1ryda1



not modelled 100.0 19 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
45d2nvwa1



not modelled 100.0 22 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
46d1zh8a1



not modelled 100.0 26 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
47d1tlta1



not modelled 100.0 87 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
48d1ydwa1



not modelled 100.0 21 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
49d1xeaa1



not modelled 100.0 29 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
50c1j5pA_



not modelled 99.9 10 PDB header:oxidoreductase
Chain: A: PDB Molecule:aspartate dehydrogenase;
PDBTitle: crystal structure of aspartate dehydrogenase (tm1643) from thermotoga2 maritima at 1.9 a resolution
51d1lc0a1



not modelled 99.9 22 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
52d1f06a1



not modelled 99.9 17 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
53c3dapB_



not modelled 99.9 15 PDB header:oxidoreductase
Chain: B: PDB Molecule:diaminopimelic acid dehydrogenase;
PDBTitle: c. glutamicum dap dehydrogenase in complex with nadp+ and2 the inhibitor 5s-isoxazoline
54c2dc1A_



not modelled 99.8 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:l-aspartate dehydrogenase;
PDBTitle: crystal structure of l-aspartate dehydrogenase from2 hyperthermophilic archaeon archaeoglobus fulgidus
55d1oi7a1



not modelled 99.7 19 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
56d2nu7a1



not modelled 99.7 14 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
57c1ebuA_



not modelled 99.7 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:homoserine dehydrogenase;
PDBTitle: homoserine dehydrogenase complex with nad analogue and l-2 homoserine
58d1ebfa1



not modelled 99.7 14 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
59d1j5pa4



not modelled 99.7 11 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
60c3mtjA_



not modelled 99.6 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:homoserine dehydrogenase;
PDBTitle: the crystal structure of a homoserine dehydrogenase from thiobacillus2 denitrificans to 2.15a
61c3do5A_



not modelled 99.6 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:homoserine dehydrogenase;
PDBTitle: crystal structure of putative homoserine dehydrogenase (np_069768.1)2 from archaeoglobus fulgidus at 2.20 a resolution
62d1euca1



not modelled 99.6 14 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
63d2dt5a2



not modelled 99.6 15 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Transcriptional repressor Rex, C-terminal domain
64c3bioB_



not modelled 99.6 18 PDB header:oxidoreductase
Chain: B: PDB Molecule:oxidoreductase, gfo/idh/moca family;
PDBTitle: crystal structure of oxidoreductase (gfo/idh/moca family member) from2 porphyromonas gingivalis w83
65d2nvwa2



not modelled 99.5 9 Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Glucose 6-phosphate dehydrogenase-like
66c1drwA_



not modelled 99.5 12 PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydrodipicolinate reductase;
PDBTitle: escherichia coli dhpr/nhdh complex
67d1zh8a2



not modelled 99.5 14 Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Glucose 6-phosphate dehydrogenase-like
68d1tlta2



not modelled 99.5 100 Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Glucose 6-phosphate dehydrogenase-like
69c2axqA_



not modelled 99.4 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:saccharopine dehydrogenase;
PDBTitle: apo histidine-tagged saccharopine dehydrogenase (l-glu2 forming) from saccharomyces cerevisiae
70d1e5qa1



not modelled 99.4 15 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
71d1xeaa2



not modelled 99.4 18 Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Glucose 6-phosphate dehydrogenase-like
72c3ketA_



not modelled 99.4 16 PDB header:transcription/dna
Chain: A: PDB Molecule:redox-sensing transcriptional repressor rex;
PDBTitle: crystal structure of a rex-family transcriptional regulatory protein2 from streptococcus agalactiae bound to a palindromic operator
73d1h6da2



not modelled 99.4 10 Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Glucose 6-phosphate dehydrogenase-like
74c3ic5A_



not modelled 99.3 20 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative saccharopine dehydrogenase;
PDBTitle: n-terminal domain of putative saccharopine dehydrogenase from ruegeria2 pomeroyi.
75d1omoa_



not modelled 99.3 16 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Ornithine cyclodeaminase-like
76c2dt5A_



not modelled 99.3 15 PDB header:dna binding protein
Chain: A: PDB Molecule:at-rich dna-binding protein;
PDBTitle: crystal structure of ttha1657 (at-rich dna-binding protein) from2 thermus thermophilus hb8
77c2ejwB_



not modelled 99.3 22 PDB header:oxidoreductase
Chain: B: PDB Molecule:homoserine dehydrogenase;
PDBTitle: homoserine dehydrogenase from thermus thermophilus hb8
78d1ydwa2



not modelled 99.3 13 Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Glucose 6-phosphate dehydrogenase-like
79c3hdjA_



not modelled 99.2 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:probable ornithine cyclodeaminase;
PDBTitle: the crystal structure of probable ornithine cyclodeaminase from2 bordetella pertussis tohama i
80c1e5lA_



not modelled 99.2 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:saccharopine reductase;
PDBTitle: apo saccharopine reductase from magnaporthe grisea
81c2i99A_



not modelled 99.1 12 PDB header:oxidoreductase
Chain: A: PDB Molecule:mu-crystallin homolog;
PDBTitle: crystal structure of human mu_crystallin at 2.6 angstrom
82c2yv1A_



not modelled 99.1 15 PDB header:ligase
Chain: A: PDB Molecule:succinyl-coa ligase [adp-forming] subunit alpha;
PDBTitle: crystal structure of succinyl-coa synthetase alpha chain from2 methanocaldococcus jannaschii dsm 2661
83c2z2vA_



not modelled 98.9 11 PDB header:oxidoreductase
Chain: A: PDB Molecule:hypothetical protein ph1688;
PDBTitle: crystal structure of l-lysine dehydrogenase from2 hyperthermophilic archaeon pyrococcus horikoshii
84c3a14B_



not modelled 98.9 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase;
PDBTitle: crystal structure of dxr from thermotoga maritima, in complex with2 nadph
85c1r0lD_



not modelled 98.8 11 PDB header:oxidoreductase
Chain: D: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase;
PDBTitle: 1-deoxy-d-xylulose 5-phosphate reductoisomerase from2 zymomonas mobilis in complex with nadph
86c3c8mA_



not modelled 98.8 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:homoserine dehydrogenase;
PDBTitle: crystal structure of homoserine dehydrogenase from thermoplasma2 volcanium
87c3l6dB_



not modelled 98.8 14 PDB header:oxidoreductase
Chain: B: PDB Molecule:putative oxidoreductase;
PDBTitle: crystal structure of putative oxidoreductase from pseudomonas putida2 kt2440
88c3d1lB_



not modelled 98.8 13 PDB header:oxidoreductase
Chain: B: PDB Molecule:putative nadp oxidoreductase bf3122;
PDBTitle: crystal structure of putative nadp oxidoreductase bf3122 from2 bacteroides fragilis
89c2czcD_



not modelled 98.7 24 PDB header:oxidoreductase
Chain: D: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase from2 pyrococcus horikoshii ot3
90c1b7gO_



not modelled 98.7 12 PDB header:oxidoreductase
Chain: O: PDB Molecule:protein (glyceraldehyde 3-phosphate dehydrogenase);
PDBTitle: glyceraldehyde 3-phosphate dehydrogenase
91c2jcyA_



not modelled 98.7 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase;
PDBTitle: x-ray structure of mutant 1-deoxy-d-xylulose 5-phosphate2 reductoisomerase, dxr, rv2870c, from mycobacterium3 tuberculosis
92c3cumA_



not modelled 98.7 12 PDB header:oxidoreductase
Chain: A: PDB Molecule:probable 3-hydroxyisobutyrate dehydrogenase;
PDBTitle: crystal structure of a possible 3-hydroxyisobutyrate dehydrogenase2 from pseudomonas aeruginosa pao1
93c3g0oA_



not modelled 98.6 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:3-hydroxyisobutyrate dehydrogenase;
PDBTitle: crystal structure of 3-hydroxyisobutyrate dehydrogenase2 (ygbj) from salmonella typhimurium
94c3b1fA_



not modelled 98.6 11 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative prephenate dehydrogenase;
PDBTitle: crystal structure of prephenate dehydrogenase from streptococcus2 mutans
95c3gt0A_



not modelled 98.6 9 PDB header:oxidoreductase
Chain: A: PDB Molecule:pyrroline-5-carboxylate reductase;
PDBTitle: crystal structure of pyrroline 5-carboxylate reductase from bacillus2 cereus. northeast structural genomics consortium target bcr38b
96c3ijpA_



not modelled 98.6 9 PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydrodipicolinate reductase;
PDBTitle: crystal structure of dihydrodipicolinate reductase from2 bartonella henselae at 2.0a resolution
97d1cf2o1



not modelled 98.6 12 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
98d1diha1



not modelled 98.6 13 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
99c3fwnB_



not modelled 98.5 13 PDB header:oxidoreductase
Chain: B: PDB Molecule:6-phosphogluconate dehydrogenase, decarboxylating;
PDBTitle: dimeric 6-phosphogluconate dehydrogenase complexed with 6-2 phosphogluconate and 2'-monophosphoadenosine-5'-diphosphate
100c3ckyA_



not modelled 98.5 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:2-hydroxymethyl glutarate dehydrogenase;
PDBTitle: structural and kinetic properties of a beta-hydroxyacid dehydrogenase2 involved in nicotinate fermentation
101c2uyyD_



not modelled 98.5 13 PDB header:cytokine
Chain: D: PDB Molecule:n-pac protein;
PDBTitle: structure of the cytokine-like nuclear factor n-pac
102c2ahrB_



not modelled 98.5 21 PDB header:oxidoreductase
Chain: B: PDB Molecule:putative pyrroline carboxylate reductase;
PDBTitle: crystal structures of 1-pyrroline-5-carboxylate reductase from human2 pathogen streptococcus pyogenes
103c2ag8A_



not modelled 98.5 12 PDB header:oxidoreductase
Chain: A: PDB Molecule:pyrroline-5-carboxylate reductase;
PDBTitle: nadp complex of pyrroline-5-carboxylate reductase from neisseria2 meningitidis
104d2czca2



not modelled 98.5 22 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
105c3qhaB_



not modelled 98.5 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:putative oxidoreductase;
PDBTitle: crystal structure of a putative oxidoreductase from mycobacterium2 avium 104
106c2nu8D_



not modelled 98.5 12 PDB header:ligase
Chain: D: PDB Molecule:succinyl-coa ligase [adp-forming] subunit alpha;
PDBTitle: c123at mutant of e. coli succinyl-coa synthetase
107c3dzbA_



not modelled 98.5 10 PDB header:biosynthetic protein
Chain: A: PDB Molecule:prephenate dehydrogenase;
PDBTitle: crystal structure of prephenate dehydrogenase from streptococcus2 thermophilus
108c3triB_



not modelled 98.5 15 PDB header:oxidoreductase
Chain: B: PDB Molecule:pyrroline-5-carboxylate reductase;
PDBTitle: structure of a pyrroline-5-carboxylate reductase (proc) from coxiella2 burnetii
109c1i36A_



not modelled 98.4 13 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein mth1747;
PDBTitle: structure of conserved protein mth1747 of unknown function2 reveals structural similarity with 3-hydroxyacid3 dehydrogenases
110c2p4qA_



not modelled 98.4 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:6-phosphogluconate dehydrogenase, decarboxylating 1;
PDBTitle: crystal structure analysis of gnd1 in saccharomyces cerevisiae
111c2gf2B_



not modelled 98.4 13 PDB header:oxidoreductase
Chain: B: PDB Molecule:3-hydroxyisobutyrate dehydrogenase;
PDBTitle: crystal structure of human hydroxyisobutyrate dehydrogenase
112c1cf2Q_



not modelled 98.4 12 PDB header:oxidoreductase
Chain: Q: PDB Molecule:protein (glyceraldehyde-3-phosphate
PDBTitle: three-dimensional structure of d-glyceraldehyde-3-phosphate2 dehydrogenase from the hyperthermophilic archaeon3 methanothermus fervidus
113d2ahra2



not modelled 98.4 21 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
114c2f1kD_



not modelled 98.4 19 PDB header:oxidoreductase
Chain: D: PDB Molecule:prephenate dehydrogenase;
PDBTitle: crystal structure of synechocystis arogenate dehydrogenase
115c2ozpA_



not modelled 98.4 11 PDB header:oxidoreductase
Chain: A: PDB Molecule:n-acetyl-gamma-glutamyl-phosphate reductase;
PDBTitle: crystal structure of n-acetyl-gamma-glutamyl-phosphate reductase2 (ttha1904) from thermus thermophilus
116c1pgjA_



not modelled 98.4 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:6-phosphogluconate dehydrogenase;
PDBTitle: x-ray structure of 6-phosphogluconate dehydrogenase from the protozoan2 parasite t. brucei
117c2ph5A_



not modelled 98.4 16 PDB header:transferase
Chain: A: PDB Molecule:homospermidine synthase;
PDBTitle: crystal structure of the homospermidine synthase hss from legionella2 pneumophila in complex with nad, northeast structural genomics target3 lgr54
118c2iz1C_



not modelled 98.4 15 PDB header:oxidoreductase
Chain: C: PDB Molecule:6-phosphogluconate dehydrogenase, decarboxylating;
PDBTitle: 6pdh complexed with pex inhibitor synchrotron data
119c1oi7A_



not modelled 98.3 17 PDB header:synthetase
Chain: A: PDB Molecule:succinyl-coa synthetase alpha chain;
PDBTitle: the crystal structure of succinyl-coa synthetase alpha2 subunit from thermus thermophilus
120c2q3eH_



not modelled 98.3 13 PDB header:oxidoreductase
Chain: H: PDB Molecule:udp-glucose 6-dehydrogenase;
PDBTitle: structure of human udp-glucose dehydrogenase complexed with nadh and2 udp-glucose

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0