Secondary structure and disorder prediction

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Sequence		M	T	D	L	F	S	S	P	D	H	T	L	D	A	L	G	L	R	C	P	E	P	V	M	M	V	R	K	T	V	R	N	M	Q	P	G	E	T	L	L	I	I	A	D	D	P	A	T	T	R	D	I	P	G	F	C	T	F	M	E
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																								?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Sequence		H	E	L	V	A	K	E	T	D	G	L	P	Y	R	Y	L	I	R	K	G	G
Secondary structure
SS confidence
Disorder																					?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1dcj chain A Region: 1 - 81 Aligned: 81 Modelled: 81 Confidence: 99.9% Identity: 100% Fold: IF3-like Superfamily: SirA-like Family: SirA-like Phyre2 PDB 1je3 chain A Region: 1 - 79 Aligned: 77 Modelled: 79 Confidence: 99.9% Identity: 30% Fold: IF3-like Superfamily: SirA-like Family: SirA-like Phyre2 PDB 1pav chain A Region: 4 - 80 Aligned: 77 Modelled: 77 Confidence: 99.8% Identity: 27% Fold: IF3-like Superfamily: SirA-like Family: SirA-like Phyre2 PDB 1jdq chain A Region: 1 - 79 Aligned: 77 Modelled: 79 Confidence: 99.8% Identity: 30% Fold: IF3-like Superfamily: SirA-like Family: SirA-like Phyre2 PDB 3hz7 chain A Region: 11 - 80 Aligned: 70 Modelled: 70 Confidence: 99.8% Identity: 23% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the sira-like protein (dsy4693) from2 desulfitobacterium hafniense, northeast structural genomics3 consortium target dhr2a Phyre2 PDB 1yg0 chain A Region: 10 - 64 Aligned: 55 Modelled: 55 Confidence: 90.5% Identity: 22% PDB header:metal transport Chain: A: PDB Molecule:cop associated protein; PDBTitle: solution structure of apo-copp from helicobacter pylori Phyre2 PDB 1y3k chain A Region: 11 - 72 Aligned: 62 Modelled: 62 Confidence: 86.0% Identity: 13% PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the apo form of the fifth domain of2 menkes protein Phyre2 PDB 1p6t chain A domain 1 Region: 11 - 64 Aligned: 54 Modelled: 54 Confidence: 82.0% Identity: 20% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 1p6t chain A domain 2 Region: 11 - 70 Aligned: 60 Modelled: 60 Confidence: 79.7% Identity: 15% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 1kvj chain A Region: 1 - 69 Aligned: 69 Modelled: 69 Confidence: 78.4% Identity: 14% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 2gcf chain A Region: 1 - 69 Aligned: 64 Modelled: 69 Confidence: 74.5% Identity: 11% PDB header:hydrolase Chain: A: PDB Molecule:cation-transporting atpase pacs; PDBTitle: solution structure of the n-terminal domain of the coppper(i) atpase2 pacs in its apo form Phyre2 PDB 2d9i chain A domain 1 Region: 10 - 78 Aligned: 67 Modelled: 69 Confidence: 73.0% Identity: 12% Fold: IF3-like Superfamily: SMR domain-like Family: Smr domain Phyre2 PDB 1cc8 chain A Region: 9 - 68 Aligned: 57 Modelled: 59 Confidence: 72.9% Identity: 11% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 2kt2 chain A Region: 11 - 64 Aligned: 54 Modelled: 54 Confidence: 71.9% Identity: 11% PDB header:oxidoreductase Chain: A: PDB Molecule:mercuric reductase; PDBTitle: structure of nmera, the n-terminal hma domain of tn501 mercuric2 reductase Phyre2 PDB 3qwu chain A Region: 22 - 79 Aligned: 58 Modelled: 58 Confidence: 70.3% Identity: 9% PDB header:ligase Chain: A: PDB Molecule:dna ligase; PDBTitle: putative atp-dependent dna ligase from aquifex aeolicus. Phyre2 PDB 2aw0 chain A Region: 1 - 64 Aligned: 59 Modelled: 59 Confidence: 70.3% Identity: 12% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 1q8l chain A Region: 11 - 71 Aligned: 61 Modelled: 61 Confidence: 70.2% Identity: 10% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 3grz chain A Region: 2 - 79 Aligned: 78 Modelled: 78 Confidence: 68.3% Identity: 12% PDB header:transferase Chain: A: PDB Molecule:ribosomal protein l11 methyltransferase; PDBTitle: crystal structure of ribosomal protein l11 methylase from2 lactobacillus delbrueckii subsp. bulgaricus Phyre2 PDB 2vkc chain A Region: 8 - 78 Aligned: 69 Modelled: 71 Confidence: 64.9% Identity: 13% PDB header:hydrolase Chain: A: PDB Molecule:nedd4-binding protein 2; PDBTitle: solution structure of the b3bp smr domain Phyre2 PDB 2ggp chain B domain 1 Region: 11 - 69 Aligned: 59 Modelled: 59 Confidence: 64.8% Identity: 12% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 1 d1dcja_ 2 d1je3a_ 3 d1pava_ 4 d1jdqa_ 5 c3hz7A_ 6 c1yg0A_ 7 c1y3kA_ 8 d1p6ta1 9 d1p6ta2 10 d1kvja_ 11 c2gcfA_ 12 d2d9ia1 13 d1cc8a_ 14 c2kt2A_ 15 c3qwuA_ 16 d2aw0a_ 17 d1q8la_ 18 c3grzA_ 19 c2vkcA_ 20 d2ggpb1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1dcja_ 99.9 100 Fold:IF3-like Superfamily:SirA-like Family:SirA-like 2 d1je3a_ 99.9 30 Fold:IF3-like Superfamily:SirA-like Family:SirA-like 3 d1pava_ 99.8 27 Fold:IF3-like Superfamily:SirA-like Family:SirA-like 4 d1jdqa_ 99.8 30 Fold:IF3-like Superfamily:SirA-like Family:SirA-like 5 c3hz7A_ 99.8 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the sira-like protein (dsy4693) from2 desulfitobacterium hafniense, northeast structural genomics3 consortium target dhr2a 6 c1yg0A_ 90.5 22 PDB header:metal transport Chain: A: PDB Molecule:cop associated protein; PDBTitle: solution structure of apo-copp from helicobacter pylori 7 c1y3kA_ 86.0 13 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the apo form of the fifth domain of2 menkes protein 8 d1p6ta1 82.0 20 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 9 d1p6ta2 79.7 15 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 10 d1kvja_ 78.4 14 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 11 c2gcfA_ 74.5 11 PDB header:hydrolase Chain: A: PDB Molecule:cation-transporting atpase pacs; PDBTitle: solution structure of the n-terminal domain of the coppper(i) atpase2 pacs in its apo form 12 d2d9ia1 73.0 12 Fold:IF3-like Superfamily:SMR domain-like Family:Smr domain 13 d1cc8a_ 72.9 11 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 14 c2kt2A_ 71.9 11 PDB header:oxidoreductase Chain: A: PDB Molecule:mercuric reductase; PDBTitle: structure of nmera, the n-terminal hma domain of tn501 mercuric2 reductase 15 c3qwuA_ 70.3 9 PDB header:ligase Chain: A: PDB Molecule:dna ligase; PDBTitle: putative atp-dependent dna ligase from aquifex aeolicus. 16 d2aw0a_ 70.3 12 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 17 d1q8la_ 70.2 10 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 18 c3grzA_ 68.3 12 PDB header:transferase Chain: A: PDB Molecule:ribosomal protein l11 methyltransferase; PDBTitle: crystal structure of ribosomal protein l11 methylase from2 lactobacillus delbrueckii subsp. bulgaricus 19 c2vkcA_ 64.9 13 PDB header:hydrolase Chain: A: PDB Molecule:nedd4-binding protein 2; PDBTitle: solution structure of the b3bp smr domain 20 d2ggpb1 64.8 12 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 21 d1s6ua_ not modelled 64.3 11 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 22 c2l3mA_ not modelled 61.4 21 PDB header:metal binding protein Chain: A: PDB Molecule:copper-ion-binding protein; PDBTitle: solution structure of the putative copper-ion-binding protein from2 bacillus anthracis str. ames 23 c1yjrA_ not modelled 60.0 17 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the apo form of the sixth soluble2 domain a69p mutant of menkes protein 24 d2qifa1 not modelled 55.5 21 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 25 d1mwza_ not modelled 54.2 19 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 26 c2ldiA_ not modelled 51.7 13 PDB header:hydrolase Chain: A: PDB Molecule:zinc-transporting atpase; PDBTitle: nmr solution structure of ziaan sub mutant 27 c2kyzA_ not modelled 51.3 13 PDB header:metal binding protein Chain: A: PDB Molecule:heavy metal binding protein; PDBTitle: nmr structure of heavy metal binding protein tm0320 from thermotoga2 maritima 28 d1cpza_ not modelled 48.4 13 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 29 c3dxsX_ not modelled 48.2 14 PDB header:hydrolase Chain: X: PDB Molecule:copper-transporting atpase ran1; PDBTitle: crystal structure of a copper binding domain from hma7, a p-2 type atpase 30 c2aivA_ not modelled 47.3 12 PDB header:transport protein Chain: A: PDB Molecule:fragment of nucleoporin nup116/nsp116; PDBTitle: multiple conformations in the ligand-binding site of the2 yeast nuclear pore targeting domain of nup116p 31 d1osda_ not modelled 46.1 15 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 32 d2nxca1 not modelled 40.8 7 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Ribosomal protein L11 methyltransferase PrmA 33 c2ofhX_ not modelled 38.0 11 PDB header:hydrolase, membrane protein Chain: X: PDB Molecule:zinc-transporting atpase; PDBTitle: solution structure of the n-terminal domain of the zinc(ii) atpase2 ziaa in its apo form 34 c3nf5A_ not modelled 37.9 6 PDB header:protein transport Chain: A: PDB Molecule:nucleoporin nup116; PDBTitle: crystal structure of the c-terminal domain of nuclear pore complex2 component nup116 from candida glabrata 35 d1afia_ not modelled 36.9 19 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 36 d1sb6a_ not modelled 35.2 19 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 37 c1ko6A_ not modelled 34.9 0 PDB header:transferase Chain: A: PDB Molecule:nuclear pore complex protein nup98; PDBTitle: crystal structure of c-terminal autoproteolytic domain of2 nucleoporin nup98 38 c2q5xA_ not modelled 32.8 0 PDB header:protein transport Chain: A: PDB Molecule:nuclear pore complex protein nup98; PDBTitle: crystal structure of the c-terminal domain of hnup98 39 c2kkhA_ not modelled 32.4 13 PDB header:metal transport Chain: A: PDB Molecule:putative heavy metal transporter; PDBTitle: structure of the zinc binding domain of the atpase hma4 40 c3cg6A_ not modelled 30.6 23 PDB header:cell cycle Chain: A: PDB Molecule:growth arrest and dna-damage-inducible 45 gamma; PDBTitle: crystal structure of gadd45 gamma 41 c3kepA_ not modelled 29.7 6 PDB header:protein transport, rna binding protein Chain: A: PDB Molecule:nucleoporin nup145; PDBTitle: crystal structure of the autoproteolytic domain from the2 nuclear pore complex component nup145 from saccharomyces3 cerevisiae 42 c3qd7X_ not modelled 29.3 21 PDB header:hydrolase Chain: X: PDB Molecule:uncharacterized protein ydal; PDBTitle: crystal structure of ydal, a stand-alone small muts-related protein2 from escherichia coli 43 c2zqeA_ not modelled 27.4 21 PDB header:dna binding protein Chain: A: PDB Molecule:muts2 protein; PDBTitle: crystal structure of the smr domain of thermus thermophilus muts2 44 c2k2pA_ not modelled 25.4 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1203; PDBTitle: solution nmr structure of protein atu1203 from agrobacterium2 tumefaciens. northeast structural genomics consortium (nesg) target3 att10, ontario center for structural proteomics target atc1183 45 d1dusa_ not modelled 24.9 4 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Hypothetical protein MJ0882 46 d1fe0a_ not modelled 24.7 11 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 47 c3ntaA_ not modelled 24.4 11 PDB header:oxidoreductase Chain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide PDBTitle: structure of the shewanella loihica pv-4 nadh-dependent persulfide2 reductase 48 d1y8ca_ not modelled 23.9 24 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:CAC2371-like 49 d1uv7a_ not modelled 22.9 15 Fold:RRF/tRNA synthetase additional domain-like Superfamily:General secretion pathway protein M, EpsM Family:General secretion pathway protein M, EpsM 50 c1uv7A_ not modelled 22.9 15 PDB header:transport Chain: A: PDB Molecule:general secretion pathway protein m; PDBTitle: periplasmic domain of epsm from vibrio cholerae 51 d1wj4a_ not modelled 22.8 10 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:UBX domain 52 c2kngA_ not modelled 22.7 16 PDB header:dna binding protein Chain: A: PDB Molecule:protein lsr2; PDBTitle: solution structure of c-domain of lsr2 53 d1h8ca_ not modelled 20.5 13 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:UBX domain 54 c2rmlA_ not modelled 17.2 16 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting p-type atpase copa; PDBTitle: solution structure of the n-terminal soluble domains of2 bacillus subtilis copa 55 d2cr5a1 not modelled 17.1 7 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:UBX domain 56 d1jvaa3 not modelled 17.1 9 Fold:Homing endonuclease-like Superfamily:Homing endonucleases Family:Intein endonuclease 57 c2rogA_ not modelled 16.2 18 PDB header:metal binding protein Chain: A: PDB Molecule:heavy metal binding protein; PDBTitle: solution structure of thermus thermophilus hb8 ttha17182 protein in living e. coli cells 58 c3fpnB_ not modelled 16.1 3 PDB header:dna binding protein Chain: B: PDB Molecule:geobacillus stearothermophilus uvrb interaction PDBTitle: crystal structure of uvra-uvrb interaction domains 59 c2ziuA_ not modelled 15.8 8 PDB header:hydrolase Chain: A: PDB Molecule:mus81 protein; PDBTitle: crystal structure of the mus81-eme1 complex 60 d2cc0a1 not modelled 15.1 11 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 61 d1i42a_ not modelled 13.2 19 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:UBX domain 62 c3qq5A_ not modelled 12.1 17 PDB header:oxidoreductase Chain: A: PDB Molecule:small gtp-binding protein; PDBTitle: crystal structure of the [fefe]-hydrogenase maturation protein hydf 63 c3icrA_ not modelled 11.7 7 PDB header:oxidoreductase Chain: A: PDB Molecule:coenzyme a-disulfide reductase; PDBTitle: crystal structure of oxidized bacillus anthracis coadr-rhd 64 c3dlcA_ not modelled 11.3 6 PDB header:transferase Chain: A: PDB Molecule:putative s-adenosyl-l-methionine-dependent PDBTitle: crystal structure of a putative s-adenosyl-l-methionine-dependent2 methyltransferase (mmp1179) from methanococcus maripaludis at 1.15 a3 resolution 65 d1j23a_ not modelled 11.1 14 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:XPF/Rad1/Mus81 nuclease 66 c3ndjA_ not modelled 11.1 24 PDB header:transferase Chain: A: PDB Molecule:methyltransferase; PDBTitle: x-ray structure of a c-3'-methyltransferase in complex with s-2 adenosyl-l-homocysteine and sugar product 67 d1l3ia_ not modelled 11.0 14 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Precorrin-6Y methyltransferase (CbiT) 68 c2jraB_ not modelled 10.9 9 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein rpa2121; PDBTitle: a novel domain-swapped solution nmr structure of protein rpa2121 from2 rhodopseudomonas palustris. northeast structural genomics target rpt6 69 c2ga7A_ not modelled 10.9 13 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the copper(i) form of the third metal-2 binding domain of atp7a protein (menkes disease protein) 70 d2naca2 not modelled 10.8 15 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:Formate/glycerate dehydrogenases, substrate-binding domain 71 c3lteH_ not modelled 10.8 14 PDB header:transcription Chain: H: PDB Molecule:response regulator; PDBTitle: crystal structure of response regulator (signal receiver domain) from2 bermanella marisrubri 72 d2obba1 not modelled 10.3 15 Fold:HAD-like Superfamily:HAD-like Family:BT0820-like 73 c2pwyB_ not modelled 10.0 13 PDB header:transferase Chain: B: PDB Molecule:trna (adenine-n(1)-)-methyltransferase; PDBTitle: crystal structure of a m1a58 trna methyltransferase 74 c2kxjA_ not modelled 9.4 11 PDB header:protein binding Chain: A: PDB Molecule:ubx domain-containing protein 4; PDBTitle: solution structure of ubx domain of human ubxd2 protein 75 c3fryB_ not modelled 9.3 18 PDB header:hydrolase Chain: B: PDB Molecule:probable copper-exporting p-type atpase a; PDBTitle: crystal structure of the copa c-terminal metal binding domain 76 c2zpmA_ not modelled 9.3 13 PDB header:hydrolase Chain: A: PDB Molecule:regulator of sigma e protease; PDBTitle: crystal structure analysis of pdz domain b 77 c3d00A_ not modelled 9.1 22 PDB header:metal binding protein Chain: A: PDB Molecule:tungsten formylmethanofuran dehydrogenase subunit e; PDBTitle: crystal structure of a tungsten formylmethanofuran dehydrogenase2 subunit e (fmde)-like protein (syn_00638) from syntrophus3 aciditrophicus at 1.90 a resolution 78 c2eseA_ not modelled 8.9 22 PDB header:protein/rna complex Chain: A: PDB Molecule:vts1p; PDBTitle: structure of the sam domain of vts1p in complex with rna 79 c2b6gA_ not modelled 8.8 22 PDB header:rna binding protein Chain: A: PDB Molecule:vts1p; PDBTitle: rna recognition by the vts1 sam domain 80 d1s3sg_ not modelled 8.5 19 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:UBX domain 81 c2ropA_ not modelled 8.3 11 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 2; PDBTitle: solution structure of domains 3 and 4 of human atp7b 82 c3evzA_ not modelled 8.1 13 PDB header:transferase Chain: A: PDB Molecule:methyltransferase; PDBTitle: crystal strucure of methyltransferase from pyrococcus furiosus 83 d2bgwa2 not modelled 8.0 13 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:XPF/Rad1/Mus81 nuclease 84 c3iz6A_ not modelled 7.8 8 PDB header:ribosome Chain: A: PDB Molecule:40s ribosomal protein sa (s2p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 85 d2b2na1 not modelled 7.6 8 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 86 c3hm2G_ not modelled 7.5 7 PDB header:transferase Chain: G: PDB Molecule:precorrin-6y c5,15-methyltransferase; PDBTitle: crystal structure of putative precorrin-6y c5,15-2 methyltransferase targeted domain from corynebacterium3 diphtheriae 87 c3njrB_ not modelled 7.1 10 PDB header:transferase Chain: B: PDB Molecule:precorrin-6y methylase; PDBTitle: crystal structure of c-terminal domain of precorrin-6y c5,15-2 methyltransferase from rhodobacter capsulatus 88 c3c5yD_ not modelled 7.0 10 PDB header:isomerase Chain: D: PDB Molecule:ribose/galactose isomerase; PDBTitle: crystal structure of a putative ribose 5-phosphate isomerase2 (saro_3514) from novosphingobium aromaticivorans dsm at 1.81 a3 resolution 89 d1o54a_ not modelled 6.7 13 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:tRNA(1-methyladenosine) methyltransferase-like 90 d1qupa2 not modelled 6.4 16 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 91 c2dzkA_ not modelled 6.4 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubx domain-containing protein 2; PDBTitle: structure of the ubx domain in mouse ubx domain-containing2 protein 2 92 c3hjhA_ not modelled 6.3 8 PDB header:hydrolase Chain: A: PDB Molecule:transcription-repair-coupling factor; PDBTitle: a rigid n-terminal clamp restrains the motor domains of the bacterial2 transcription-repair coupling factor 93 c3mruB_ not modelled 6.1 16 PDB header:hydrolase Chain: B: PDB Molecule:aminoacyl-histidine dipeptidase; PDBTitle: crystal structure of aminoacylhistidine dipeptidase from vibrio2 alginolyticus 94 c3fpnA_ not modelled 5.9 8 PDB header:dna binding protein Chain: A: PDB Molecule:geobacillus stearothermophilus uvra interaction PDBTitle: crystal structure of uvra-uvrb interaction domains 95 c2aj1A_ not modelled 5.9 14 PDB header:hydrolase Chain: A: PDB Molecule:probable cadmium-transporting atpase; PDBTitle: solution structure of apocada 96 d2b25a1 not modelled 5.8 13 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:tRNA(1-methyladenosine) methyltransferase-like 97 d1u0sy_ not modelled 5.7 23 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 98 c2rpiA_ not modelled 5.7 6 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease h; PDBTitle: the nmr structure of the submillisecond folding2 intermediate of the thermus thermophilus ribonuclease h 99 d2ciwa1 not modelled 5.6 38 Fold:EF Hand-like Superfamily:Cloroperoxidase Family:Cloroperoxidase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0