Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	D	D	I	V	N	S	V	P	S	W	M	F	T	A	I	I	A	V	C	I	L	F	I	I	G	I	I	F	A	R	L	Y	R	R	A	S	A	E	Q	A	F	V	R	T	G	L	G	G	Q	K	V	V	M	S	G	G	A	I	V
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		M	P	I	F	H	E	I	I	P	I	N	M	N	T	L	K	L	E	V	S	R	S	T	I	D	S	L	I	T	K	D	R	M	R	V	D	V	V	V	A	F	F	V	R	V	K	P	S	V	E	G	I	A	T	A	A	Q	T	L	G
Secondary structure
SS confidence
Disorder																					?	?	?	?	?	?		?		?																															?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		Q	R	T	L	S	P	E	D	L	R	M	L	V	E	D	K	F	V	D	A	L	R	A	T	A	A	Q	M	T	M	H	E	L	Q	D	T	R	E	N	F	V	Q	G	V	Q	N	T	V	A	E	D	L	S	K	N	G	L	E	L	E
Secondary structure
SS confidence
Disorder		?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		S	V	S	L	T	N	F	N	Q	T	S	K	E	H	F	N	P	N	N	A	F	D	A	E	G	L	T	K	L	T	Q	E	T	E	R	R	R	R	E	R	N	E	V	E	Q	D	V	E	V	A	V	R	E	K	N	R	D	A	L	S
Secondary structure
SS confidence
Disorder											?	?	?	?	?	?	?		?	?			?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		R	K	L	E	I	E	Q	Q	E	A	F	M	T	L	E	Q	E	Q	Q	V	K	T	R	T	A	E	Q	N	A	R	I	A	A	F	E	A	E	R	R	R	E	A	E	Q	T	R	I	L	A	E	R	Q	I	Q	E	T	E	I	D	R
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		E	Q	A	V	R	S	R	K	V	E	A	E	R	E	V	R	I	K	E	I	E	Q	Q	Q	V	T	E	I	A	N	Q	T	K	S	I	A	I	A	A	K	S	E	Q	Q	S	Q	A	E	A	R	A	N	L	A	L	A	E	A	V	S
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		A	Q	Q	N	V	E	T	T	R	Q	T	A	E	A	D	R	A	K	Q	V	A	L	I	A	A	A	Q	D	A	E	T	K	A	V	E	L	T	V	R	A	K	A	E	K	E	A	A	E	M	Q	A	A	A	I	V	E	L	A	E	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		T	R	K	K	G	L	A	E	A	E	A	Q	R	A	L	N	D	A	I	N	V	L	S	D	E	Q	T	S	L	K	F	K	L	A	L	L	Q	A	L	P	A	V	I	E	K	S	V	E	P	M	K	S	I	D	G	I	K	I	I	Q
Secondary structure
SS confidence
Disorder								?	?																																												?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Sequence		V	D	G	L	N	R	G	G	A	A	G	D	A	N	T	G	N	V	G	G	G	N	L	A	E	Q	A	L	S	A	A	L	S	Y	R	T	Q	A	P	L	I	D	S	L	L	N	E	I	G	V	S	G	G	S	L	A	A	L	T	S
Secondary structure
SS confidence
Disorder				?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?							?	?	?	?	?	?	?	?	?								?	?	?	?		?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	550	.	.	.
Sequence		P	L	T	S	T	T	P	V	E	E	K	A	E
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1win chain A Region: 65 - 203 Aligned: 134 Modelled: 139 Confidence: 99.8% Identity: 16% Fold: EF-Ts domain-like Superfamily: Band 7/SPFH domain Family: Band 7/SPFH domain Phyre2 PDB 3bk6 chain C Region: 63 - 233 Aligned: 157 Modelled: 171 Confidence: 99.8% Identity: 21% PDB header:membrane protein Chain: C: PDB Molecule:ph stomatin; PDBTitle: crystal structure of a core domain of stomatin from2 pyrococcus horikoshii Phyre2 PDB 2rpb chain A Region: 69 - 192 Aligned: 110 Modelled: 113 Confidence: 99.7% Identity: 16% PDB header:membrane protein Chain: A: PDB Molecule:hypothetical membrane protein; PDBTitle: the solution structure of membrane protein Phyre2 PDB 2zv4 chain O Region: 34 - 369 Aligned: 325 Modelled: 330 Confidence: 99.3% Identity: 10% PDB header:structural protein Chain: O: PDB Molecule:major vault protein; PDBTitle: the structure of rat liver vault at 3.5 angstrom resolution Phyre2 PDB 2axt chain J domain 1 Region: 9 - 33 Aligned: 25 Modelled: 25 Confidence: 78.4% Identity: 24% Fold: Single transmembrane helix Superfamily: Photosystem II reaction center protein J, PsbJ Family: PsbJ-like Phyre2 PDB 2knc chain A Region: 8 - 32 Aligned: 25 Modelled: 25 Confidence: 74.5% Identity: 16% PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex Phyre2 PDB 1y4c chain A Region: 308 - 429 Aligned: 122 Modelled: 122 Confidence: 72.0% Identity: 13% PDB header:de novo protein Chain: A: PDB Molecule:maltose binding protein fused with designed PDBTitle: designed helical protein fusion mbp Phyre2 PDB 2k1a chain A Region: 8 - 38 Aligned: 31 Modelled: 31 Confidence: 70.6% Identity: 13% PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment Phyre2 PDB 2jwa chain A Region: 7 - 38 Aligned: 32 Modelled: 32 Confidence: 54.1% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2; PDBTitle: erbb2 transmembrane segment dimer spatial structure Phyre2 PDB 3peu chain B Region: 5 - 37 Aligned: 33 Modelled: 33 Confidence: 39.6% Identity: 18% PDB header:hydrolase Chain: B: PDB Molecule:nucleoporin gle1; PDBTitle: s. cerevisiae dbp5 l327v c-terminal domain bound to gle1 h337r and ip6 Phyre2 PDB 3mk7 chain F Region: 11 - 41 Aligned: 31 Modelled: 31 Confidence: 32.4% Identity: 6% PDB header:oxidoreductase Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p; PDBTitle: the structure of cbb3 cytochrome oxidase Phyre2 PDB 1xme chain B Region: 11 - 108 Aligned: 92 Modelled: 92 Confidence: 32.1% Identity: 5% PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii; PDBTitle: structure of recombinant cytochrome ba3 oxidase from thermus2 thermophilus Phyre2 PDB 3dkt chain D Region: 51 - 108 Aligned: 58 Modelled: 58 Confidence: 31.1% Identity: 16% PDB header:structural protein/virus like particle Chain: D: PDB Molecule:maritimacin; PDBTitle: crystal structure of thermotoga maritima encapsulin Phyre2 PDB 3hd7 chain A Region: 7 - 31 Aligned: 25 Modelled: 25 Confidence: 30.3% Identity: 20% PDB header:exocytosis Chain: A: PDB Molecule:vesicle-associated membrane protein 2; PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1 Phyre2 PDB 2e0z chain A Region: 51 - 108 Aligned: 58 Modelled: 58 Confidence: 25.4% Identity: 24% PDB header:virus like particle Chain: A: PDB Molecule:virus-like particle; PDBTitle: crystal structure of virus-like particle from pyrococcus2 furiosus Phyre2 PDB 2axt chain H domain 1 Region: 8 - 29 Aligned: 22 Modelled: 22 Confidence: 21.3% Identity: 23% Fold: Single transmembrane helix Superfamily: Photosystem II 10 kDa phosphoprotein PsbH Family: PsbH-like Phyre2 PDB 3hfx chain A Region: 3 - 32 Aligned: 30 Modelled: 30 Confidence: 18.4% Identity: 20% PDB header:transport protein Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter; PDBTitle: crystal structure of carnitine transporter Phyre2 PDB 2w8a chain C Region: 3 - 32 Aligned: 30 Modelled: 30 Confidence: 17.5% Identity: 23% PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate Phyre2 PDB 1cn3 chain F Region: 8 - 19 Aligned: 12 Modelled: 12 Confidence: 17.4% Identity: 33% PDB header:viral protein Chain: F: PDB Molecule:fragment of coat protein vp2; PDBTitle: interaction of polyomavirus internal protein vp2 with major2 capsid protein vp1 and implications for participation of3 vp2 in viral entry Phyre2 PDB 2knc chain B Region: 9 - 34 Aligned: 26 Modelled: 26 Confidence: 15.9% Identity: 12% PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex Phyre2 1 d1wina_ 2 c3bk6C_ 3 c2rpbA_ 4 c2zv4O_ 5 d2axtj1 6 c2kncA_ 7 c1y4cA_ 8 c2k1aA_ 9 c2jwaA_ 10 c3peuB_ 11 c3mk7F_ 12 c1xmeB_ 13 c3dktD_ 14 c3hd7A_ 15 c2e0zA_ 16 d2axth1 17 c3hfxA_ 18 c2w8aC_ 19 c1cn3F_ 20 c2kncB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1wina_ 99.8 16 Fold:EF-Ts domain-like Superfamily:Band 7/SPFH domain Family:Band 7/SPFH domain 2 c3bk6C_ 99.8 21 PDB header:membrane protein Chain: C: PDB Molecule:ph stomatin; PDBTitle: crystal structure of a core domain of stomatin from2 pyrococcus horikoshii 3 c2rpbA_ 99.7 16 PDB header:membrane protein Chain: A: PDB Molecule:hypothetical membrane protein; PDBTitle: the solution structure of membrane protein 4 c2zv4O_ 99.3 10 PDB header:structural protein Chain: O: PDB Molecule:major vault protein; PDBTitle: the structure of rat liver vault at 3.5 angstrom resolution 5 d2axtj1 78.4 24 Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein J, PsbJ Family:PsbJ-like 6 c2kncA_ 74.5 16 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 7 c1y4cA_ 72.0 13 PDB header:de novo protein Chain: A: PDB Molecule:maltose binding protein fused with designed PDBTitle: designed helical protein fusion mbp 8 c2k1aA_ 70.6 13 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment 9 c2jwaA_ 54.1 19 PDB header:transferase Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2; PDBTitle: erbb2 transmembrane segment dimer spatial structure 10 c3peuB_ 39.6 18 PDB header:hydrolase Chain: B: PDB Molecule:nucleoporin gle1; PDBTitle: s. cerevisiae dbp5 l327v c-terminal domain bound to gle1 h337r and ip6 11 c3mk7F_ 32.4 6 PDB header:oxidoreductase Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p; PDBTitle: the structure of cbb3 cytochrome oxidase 12 c1xmeB_ 32.1 5 PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii; PDBTitle: structure of recombinant cytochrome ba3 oxidase from thermus2 thermophilus 13 c3dktD_ 31.1 16 PDB header:structural protein/virus like particle Chain: D: PDB Molecule:maritimacin; PDBTitle: crystal structure of thermotoga maritima encapsulin 14 c3hd7A_ 30.3 20 PDB header:exocytosis Chain: A: PDB Molecule:vesicle-associated membrane protein 2; PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1 15 c2e0zA_ 25.4 24 PDB header:virus like particle Chain: A: PDB Molecule:virus-like particle; PDBTitle: crystal structure of virus-like particle from pyrococcus2 furiosus 16 d2axth1 21.3 23 Fold:Single transmembrane helix Superfamily:Photosystem II 10 kDa phosphoprotein PsbH Family:PsbH-like 17 c3hfxA_ 18.4 20 PDB header:transport protein Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter; PDBTitle: crystal structure of carnitine transporter 18 c2w8aC_ 17.5 23 PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate 19 c1cn3F_ 17.4 33 PDB header:viral protein Chain: F: PDB Molecule:fragment of coat protein vp2; PDBTitle: interaction of polyomavirus internal protein vp2 with major2 capsid protein vp1 and implications for participation of3 vp2 in viral entry 20 c2kncB_ 15.9 12 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 21 c3kdpG_ not modelled 13.8 22 PDB header:hydrolase Chain: G: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a; PDBTitle: crystal structure of the sodium-potassium pump 22 c3kdpH_ not modelled 13.8 22 PDB header:hydrolase Chain: H: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a; PDBTitle: crystal structure of the sodium-potassium pump 23 c3o2qB_ not modelled 11.7 29 PDB header:hydrolase Chain: B: PDB Molecule:rna polymerase ii subunit a c-terminal domain phosphatase PDBTitle: crystal structure of the human symplekin-ssu72-ctd phosphopeptide2 complex 24 c1h4uA_ not modelled 10.9 10 PDB header:extracellular matrix protein Chain: A: PDB Molecule:nidogen-1; PDBTitle: domain g2 of mouse nidogen-1 25 c3fdfA_ not modelled 10.8 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:fr253; PDBTitle: crystal structure of the serine phosphatase of rna2 polymerase ii ctd (ssu72 superfamily) from drosophila3 melanogaster. orthorhombic crystal form. northeast4 structural genomics consortium target fr253. 26 c3o2sB_ not modelled 9.9 29 PDB header:hydrolase Chain: B: PDB Molecule:rna polymerase ii subunit a c-terminal domain phosphatase PDBTitle: crystal structure of the human symplekin-ssu72 complex 27 c1zzaA_ not modelled 9.6 15 PDB header:membrane protein Chain: A: PDB Molecule:stannin; PDBTitle: solution nmr structure of the membrane protein stannin 28 c3mk7B_ not modelled 9.3 6 PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit o; PDBTitle: the structure of cbb3 cytochrome oxidase 29 d2ix0a3 not modelled 8.7 15 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 30 c1iijA_ not modelled 8.2 13 PDB header:signaling protein Chain: A: PDB Molecule:erbb-2 receptor protein-tyrosine kinase; PDBTitle: solution structure of the neu/erbb-2 membrane spanning2 segment 31 c2jo1A_ not modelled 8.0 12 PDB header:hydrolase regulator Chain: A: PDB Molecule:phospholemman; PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles 32 c1fftG_ not modelled 7.7 15 PDB header:oxidoreductase Chain: G: PDB Molecule:ubiquinol oxidase; PDBTitle: the structure of ubiquinol oxidase from escherichia coli 33 c2l2tA_ not modelled 7.6 4 PDB header:membrane protein Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-4; PDBTitle: solution nmr structure of the erbb4 dimeric membrane domain 34 d2o4ta1 not modelled 7.5 11 Fold:Left-handed superhelix Superfamily:BH3980-like Family:BH3980-like 35 d2pila_ not modelled 7.2 18 Fold:Pili subunits Superfamily:Pili subunits Family:Pilin 36 d1oqwa_ not modelled 7.2 27 Fold:Pili subunits Superfamily:Pili subunits Family:Pilin 37 c3fcmA_ not modelled 7.1 7 PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, nudix family; PDBTitle: crystal structure of a nudix hydrolase from clostridium2 perfringens 38 c3ipdB_ not modelled 7.0 26 PDB header:exocytosis Chain: B: PDB Molecule:syntaxin-1a; PDBTitle: helical extension of the neuronal snare complex into the2 membrane, spacegroup i 21 21 21 39 c3sokB_ not modelled 7.0 23 PDB header:cell adhesion Chain: B: PDB Molecule:fimbrial protein; PDBTitle: dichelobacter nodosus pilin fima 40 c2jp3A_ not modelled 6.8 6 PDB header:transcription Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4; PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles 41 c3a0bL_ not modelled 6.8 5 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of br-substituted photosystem ii complex 42 d1jb0i_ not modelled 6.7 22 Fold:Single transmembrane helix Superfamily:Subunit VIII of photosystem I reaction centre, PsaI Family:Subunit VIII of photosystem I reaction centre, PsaI 43 d2r6gf1 not modelled 6.7 13 Fold:MalF N-terminal region-like Superfamily:MalF N-terminal region-like Family:MalF N-terminal region-like 44 c2j7aC_ not modelled 6.6 9 PDB header:oxidoreductase Chain: C: PDB Molecule:cytochrome c quinol dehydrogenase nrfh; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris 45 c1s5ll_ not modelled 6.5 5 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: architecture of the photosynthetic oxygen evolving center 46 c3a0hl_ not modelled 6.5 5 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of i-substituted photosystem ii complex 47 c3a0hL_ not modelled 6.5 5 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of i-substituted photosystem ii complex 48 c1s5lL_ not modelled 6.5 5 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: architecture of the photosynthetic oxygen evolving center 49 c3kziL_ not modelled 6.5 5 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of monomeric form of cyanobacterial photosystem ii 50 c2axtL_ not modelled 6.5 5 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus 51 c2axtl_ not modelled 6.5 5 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus 52 c3arcL_ not modelled 6.5 5 PDB header:electron transport, photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution 53 c3bz2L_ not modelled 6.5 5 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii (part 22 of 2). this file contains second monomer of psii dimer 54 c3prrL_ not modelled 6.5 5 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 2 of 2). this file contains second monomer of psii3 dimer 55 c3a0bl_ not modelled 6.5 5 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of br-substituted photosystem ii complex 56 c3prqL_ not modelled 6.5 5 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 1 of 2). this file contains first monomer of psii3 dimer 57 d2axtl1 not modelled 6.5 5 Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein L, PsbL Family:PsbL-like 58 c3bz1L_ not modelled 6.5 5 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii (part 12 of 2). this file contains first monomer of psii dimer 59 d1fftb2 not modelled 6.5 6 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 60 c2zxeG_ not modelled 6.2 35 PDB header:hydrolase/transport protein Chain: G: PDB Molecule:phospholemman-like protein; PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state 61 c1p58F_ not modelled 5.8 21 PDB header:virus Chain: F: PDB Molecule:envelope protein m; PDBTitle: complex organization of dengue virus membrane proteins as revealed by2 9.5 angstrom cryo-em reconstruction 62 d1id3b_ not modelled 5.7 15 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 63 c2btwA_ not modelled 5.7 17 PDB header:transferase Chain: A: PDB Molecule:alr0975 protein; PDBTitle: crystal structure of alr0975 64 c3arcl_ not modelled 5.7 5 PDB header:electron transport, photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution 65 c2l16A_ not modelled 5.7 30 PDB header:protein transport Chain: A: PDB Molecule:sec-independent protein translocase protein tatad; PDBTitle: solution structure of bacillus subtilits tatad protein in dpc micelles 66 c1yewI_ not modelled 5.6 10 PDB header:oxidoreductase, membrane protein Chain: I: PDB Molecule:particulate methane monooxygenase, b subunit; PDBTitle: crystal structure of particulate methane monooxygenase 67 c3rgbA_ not modelled 5.6 10 PDB header:oxidoreductase Chain: A: PDB Molecule:methane monooxygenase subunit b2; PDBTitle: crystal structure of particulate methane monooxygenase from2 methylococcus capsulatus (bath) 68 d1uxca_ not modelled 5.6 19 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 69 d1j0ha1 not modelled 5.6 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 70 d2cnza1 not modelled 5.5 15 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Bacterial adhesins Family:Pilus subunits 71 c2ks1B_ not modelled 5.5 15 PDB header:transferase Chain: B: PDB Molecule:epidermal growth factor receptor; PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation 72 d1jvaa3 not modelled 5.4 21 Fold:Homing endonuclease-like Superfamily:Homing endonucleases Family:Intein endonuclease 73 d2bu3a1 not modelled 5.4 17 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Phytochelatin synthase 74 d3dtub2 not modelled 5.3 3 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 75 c2wtoB_ not modelled 5.3 9 PDB header:metal binding protein Chain: B: PDB Molecule:orf131 protein; PDBTitle: crystal structure of apo-form czce from c. metallidurans ch34 76 c3cf6E_ not modelled 5.3 17 PDB header:signaling protein/gtp-binding protein Chain: E: PDB Molecule:rap guanine nucleotide exchange factor (gef) 4; PDBTitle: structure of epac2 in complex with cyclic-amp and rap 77 c3sbtB_ not modelled 5.3 20 PDB header:splicing Chain: B: PDB Molecule:a1 cistron-splicing factor aar2; PDBTitle: crystal structure of a aar2-prp8 complex 78 d2ix0a1 not modelled 5.2 16 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 79 c3f6aA_ not modelled 5.1 14 PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, nudix family; PDBTitle: crystal structure of a hydrolase, nudix family from2 clostridium perfringens 80 d2fhza1 not modelled 5.1 33 Fold:ImmE5-like Superfamily:ImmE5-like Family:ImmE5-like 81 c2kluA_ not modelled 5.0 15 PDB header:immune system, membrane protein Chain: A: PDB Molecule:t-cell surface glycoprotein cd4; PDBTitle: nmr structure of the transmembrane and cytoplasmic domains2 of human cd4 82 c1bhbA_ not modelled 5.0 12 PDB header:photoreceptor Chain: A: PDB Molecule:bacteriorhodopsin; PDBTitle: three-dimensional structure of (1-71) bacterioopsin2 solubilized in methanol-chloroform and sds micelles3 determined by 15n-1h heteronuclear nmr spectroscopy 83 d3ehbb2 not modelled 5.0 8 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0