PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3dktD_

Fold library id	PDB Header	Molecule	Title
c3dktD_	PDB header: structural protein/virus like particle	Chain: D: PDB Molecule: maritimacin;	PDBTitle: crystal structure of thermotoga maritima encapsulin

Links to external resources
Added to library: Tue Mar 16 12:29:28 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M E F L K R S F A P L T E K Q W Q E I D N R A R E I F K T Q L Y G R K F V D V E G P Y G W E Y A A H P L G E V E V L S D E N E V V K W G L R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
G G G S S
G G G G T S
T T
T T
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence K S L P L I E L R A T F T L D L W E L D N L E R G K P N V D L S S L E E T V R K V A E F E D E V I F R G C E K S G V K G L L S F E E R K I E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
S S
T
T T T T
S T T
G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence C G S T P K D L L E A I V R A L S I F S K D G I E G P Y T L V I N T D R W I N F L K E E A G H Y P L E K R V E E C L R G G K I I T T P R I E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T T
S S S S S S S
T T S
S S
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . .

Sequence D A L V V S E R G G D F K L I L G Q D L S I G Y E D R E K D A V R L F I T E T F T F Q V V N P E A L I L L K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T S S S S S
S
S S S
G G G

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	E	F	L	K	R	S	F	A	P	L	T	E	K	Q	W	Q	E	I	D	N	R	A	R	E	I	F	K	T	Q	L	Y	G	R	K	F	V	D	V	E	G	P	Y	G	W	E	Y	A	A	H	P	L	G	E	V	E	V	L	S	D	E	N	E	V	V	K	W	G	L	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S		G	G	G	S	S																						G	G	G	G	T	S								T	T															T	T		S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	K	S	L	P	L	I	E	L	R	A	T	F	T	L	D	L	W	E	L	D	N	L	E	R	G	K	P	N	V	D	L	S	S	L	E	E	T	V	R	K	V	A	E	F	E	D	E	V	I	F	R	G	C	E	K	S	G	V	K	G	L	L	S	F	E	E	R	K	I	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																									T		S	S																							T			T	T	T	T				S	T	T		G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	C	G	S	T	P	K	D	L	L	E	A	I	V	R	A	L	S	I	F	S	K	D	G	I	E	G	P	Y	T	L	V	I	N	T	D	R	W	I	N	F	L	K	E	E	A	G	H	Y	P	L	E	K	R	V	E	E	C	L	R	G	G	K	I	I	T	T	P	R	I	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S																	T	T	T			S	S																	S	S	S	S	S										T	T	S							S	S		S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Sequence	D	A	L	V	V	S	E	R	G	G	D	F	K	L	I	L	G	Q	D	L	S	I	G	Y	E	D	R	E	K	D	A	V	R	L	F	I	T	E	T	F	T	F	Q	V	V	N	P	E	A	L	I	L	L	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S						T	T	S	S	S						S	S		S									S	S															S		G	G	G