Email l.a.kelley@imperial.ac.uk Description P32703 Date Thu Jan 5 11:50:22 GMT 2012 Unique Job ID 27ef29db561a90cd

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1zcdA_ 99.9 14 PDB header:membrane protein Chain: A: PDB Molecule:na(+)/h(+) antiporter 1; PDBTitle: crystal structure of the na+/h+ antiporter nhaa 2 c2l0eA_ 93.7 22 PDB header:membrane protein Chain: A: PDB Molecule:sodium/hydrogen exchanger 1; PDBTitle: structural and functional analysis of tm vi of the nhe1 isoform of the2 na+/h+ exchanger 3 c2kbvA_ 84.4 26 PDB header:membrane protein Chain: A: PDB Molecule:sodium/hydrogen exchanger 1; PDBTitle: structural and functional analysis of tm xi of the nhe12 isoform of the na+/h+ exchanger 4 c3ojaB_ 43.8 11 PDB header:protein binding Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein PDBTitle: crystal structure of lrim1/apl1c complex 5 d1f6ga_ 37.9 14 Fold:Voltage-gated potassium channels Superfamily:Voltage-gated potassium channels Family:Voltage-gated potassium channels 6 c3hzsA_ 33.3 12 PDB header:transferase Chain: A: PDB Molecule:monofunctional glycosyltransferase; PDBTitle: s. aureus monofunctional glycosyltransferase (mtga)in complex with2 moenomycin 7 c1y4cA_ 32.4 13 PDB header:de novo protein Chain: A: PDB Molecule:maltose binding protein fused with designed PDBTitle: designed helical protein fusion mbp 8 d1vqop1 29.1 19 Fold:Ribosomal protein L19 (L19e) Superfamily:Ribosomal protein L19 (L19e) Family:Ribosomal protein L19 (L19e) 9 c2zv4O_ 28.0 11 PDB header:structural protein Chain: O: PDB Molecule:major vault protein; PDBTitle: the structure of rat liver vault at 3.5 angstrom resolution 10 c3ojaA_ 25.2 11 PDB header:protein binding Chain: A: PDB Molecule:leucine-rich immune molecule 1; PDBTitle: crystal structure of lrim1/apl1c complex 11 c3dtpA_ 24.0 11 PDB header:contractile protein Chain: A: PDB Molecule:myosin 2 heavy chain chimera of smooth and PDBTitle: tarantula heavy meromyosin obtained by flexible docking to2 tarantula muscle thick filament cryo-em 3d-map 12 d2csba1 22.4 14 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Topoisomerase V repeat domain 13 c4a1cO_ 22.3 16 PDB header:ribosome Chain: O: PDB Molecule:rpl19; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4. 14 c3exmA_ 20.6 6 PDB header:hydrolase Chain: A: PDB Molecule:phosphatase sc4828; PDBTitle: crystal structure of the phosphatase sc4828 with the non-hydrolyzable2 nucleotide gpcp 15 c2zkrp_ 20.6 19 PDB header:ribosomal protein/rna Chain: P: PDB Molecule:rna expansion segment es31 part i; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 16 d2nwwa1 19.8 19 Fold:Proton glutamate symport protein Superfamily:Proton glutamate symport protein Family:Proton glutamate symport protein 17 c1i84V_ 19.7 15 PDB header:contractile protein Chain: V: PDB Molecule:smooth muscle myosin heavy chain; PDBTitle: cryo-em structure of the heavy meromyosin subfragment of2 chicken gizzard smooth muscle myosin with regulatory light3 chain in the dephosphorylated state. only c alphas4 provided for regulatory light chain. only backbone atoms5 provided for s2 fragment. 18 c2dfsA_ 16.9 13 PDB header:contractile protein/transport protein Chain: A: PDB Molecule:myosin-5a; PDBTitle: 3-d structure of myosin-v inhibited state 19 c3iz5T_ 15.7 14 PDB header:ribosome Chain: T: PDB Molecule:60s ribosomal protein l19 (l19e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 20 c3h36A_ 15.4 12 PDB header:transferase Chain: A: PDB Molecule:polyribonucleotide nucleotidyltransferase; PDBTitle: structure of an uncharacterized domain in polyribonucleotide2 nucleotidyltransferase from streptococcus mutans ua159 21 d2c0sa1 not modelled 14.0 15 Fold:ROP-like Superfamily:BAS1536-like Family:BAS1536-like 22 c2v0pA_ not modelled 13.7 8 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:type 2a phosphatase-associated protein 42; PDBTitle: the structure of tap42 alpha4 subunit 23 c1y4eA_ not modelled 13.3 24 PDB header:membrane protein Chain: A: PDB Molecule:sodium/hydrogen exchanger 1; PDBTitle: nmr structure of transmembrane segment iv of the nhe12 isoform of the na+/h+ exchanger 24 d2oqoa1 not modelled 12.1 16 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:PBP transglycosylase domain-like 25 c3rl0j_ not modelled 11.5 17 PDB header:membrane protein/exocytosis Chain: J: PDB Molecule:syntaxin-1a; PDBTitle: truncated snare complex with complexin (p1) 26 d1rkla_ not modelled 11.2 21 Fold:Single transmembrane helix Superfamily:Oligosaccharyltransferase subunit ost4p Family:Oligosaccharyltransferase subunit ost4p 27 d2bzba1 not modelled 10.5 22 Fold:ROP-like Superfamily:BAS1536-like Family:BAS1536-like 28 c3layF_ not modelled 9.9 19 PDB header:metal binding protein Chain: F: PDB Molecule:zinc resistance-associated protein; PDBTitle: alpha-helical barrel formed by the decamer of the zinc resistance-2 associated protein (stm4172) from salmonella enterica subsp. enterica3 serovar typhimurium str. lt2 29 c1kilE_ not modelled 9.7 14 PDB header:membrane protein Chain: E: PDB Molecule:complexin i snare-complex binding region; PDBTitle: three-dimensional structure of the complexin/snare complex 30 d1jkva_ not modelled 9.4 24 Fold:Ferritin-like Superfamily:Ferritin-like Family:Manganese catalase (T-catalase) 31 c2l2lA_ not modelled 9.4 32 PDB header:transferase Chain: A: PDB Molecule:transcriptional repressor p66-alpha; PDBTitle: solution structure of the coiled-coil complex between mbd2 and2 p66alpha 32 c2akfA_ not modelled 9.3 42 PDB header:protein binding Chain: A: PDB Molecule:coronin-1a; PDBTitle: crystal structure of the coiled-coil domain of coronin 1 33 c2akfC_ not modelled 9.3 42 PDB header:protein binding Chain: C: PDB Molecule:coronin-1a; PDBTitle: crystal structure of the coiled-coil domain of coronin 1 34 c2akfB_ not modelled 9.3 42 PDB header:protein binding Chain: B: PDB Molecule:coronin-1a; PDBTitle: crystal structure of the coiled-coil domain of coronin 1 35 c3f1iH_ not modelled 9.2 18 PDB header:protein binding Chain: H: PDB Molecule:hepatocyte growth factor-regulated tyrosine kinase PDBTitle: human escrt-0 core complex 36 c2kncA_ not modelled 9.1 13 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 37 c3lt7D_ not modelled 8.9 25 PDB header:cell adhesion Chain: D: PDB Molecule:adhesin yada; PDBTitle: a transition from strong right-handed to canonical left-handed2 supercoiling in a conserved coiled coil segment of trimeric3 autotransporter adhesins - the m3 mutant structure 38 c1ei3C_ not modelled 8.8 9 PDB header: PDB COMPND: 39 c1nh2D_ not modelled 8.7 21 PDB header:transcription/dna Chain: D: PDB Molecule:transcription initiation factor iia small chain; PDBTitle: crystal structure of a yeast tfiia/tbp/dna complex 40 c3dinD_ not modelled 8.7 25 PDB header:membrane protein, protein transport Chain: D: PDB Molecule:preprotein translocase subunit sece; PDBTitle: crystal structure of the protein-translocation complex formed by the2 secy channel and the seca atpase 41 d2olua1 not modelled 8.6 16 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:PBP transglycosylase domain-like 42 c2pfmA_ not modelled 8.4 16 PDB header:lyase Chain: A: PDB Molecule:adenylosuccinate lyase; PDBTitle: crystal structure of adenylosuccinate lyase (purb) from bacillus2 anthracis 43 c2x7aB_ not modelled 8.0 27 PDB header:immune system Chain: B: PDB Molecule:bone marrow stromal antigen 2; PDBTitle: structural basis of hiv-1 tethering to membranes by the2 bst2-tetherin ectodomain 44 d1v9va1 not modelled 8.0 11 Fold:Bromodomain-like Superfamily:MAST3 pre-PK domain-like Family:MAST3 pre-PK domain-like 45 d2oeza1 not modelled 8.0 20 Fold:YacF-like Superfamily:YacF-like Family:YacF-like 46 d1zk8a2 not modelled 7.9 5 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 47 c3rkoF_ not modelled 7.9 16 PDB header:oxidoreductase Chain: F: PDB Molecule:nadh-quinone oxidoreductase subunit j; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 48 c2j9wB_ not modelled 7.9 22 PDB header:protein transport Chain: B: PDB Molecule:vps28-prov protein; PDBTitle: structural insight into the escrt-i-ii link and its role in2 mvb trafficking 49 c1y66D_ not modelled 7.7 27 PDB header:de novo protein Chain: D: PDB Molecule:engrailed homeodomain; PDBTitle: dioxane contributes to the altered conformation and2 oligomerization state of a designed engrailed homeodomain3 variant 50 d1c3ca_ not modelled 7.6 13 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase 51 d2j9ua1 not modelled 7.5 22 Fold:Four-helical up-and-down bundle Superfamily:VPS28 C-terminal domain-like Family:VPS28 C-terminal domain-like 52 d2fcwa1 not modelled 7.4 18 Fold:RAP domain-like Superfamily:RAP domain-like Family:RAP domain 53 c2qc7A_ not modelled 7.4 24 PDB header:chaperone Chain: A: PDB Molecule:endoplasmic reticulum protein erp29; PDBTitle: crystal structure of the protein-disulfide isomerase related chaperone2 erp29 54 c1q90R_ not modelled 7.2 16 PDB header:photosynthesis Chain: R: PDB Molecule:cytochrome b6-f complex iron-sulfur subunit; PDBTitle: structure of the cytochrome b6f (plastohydroquinone : plastocyanin2 oxidoreductase) from chlamydomonas reinhardtii 55 d1q90r_ not modelled 7.2 16 Fold:Single transmembrane helix Superfamily:ISP transmembrane anchor Family:ISP transmembrane anchor 56 c2qdqA_ not modelled 7.2 18 PDB header:structural protein Chain: A: PDB Molecule:talin-1; PDBTitle: crystal structure of the talin dimerisation domain 57 c2yvxD_ not modelled 7.1 8 PDB header:transport protein Chain: D: PDB Molecule:mg2+ transporter mgte; PDBTitle: crystal structure of magnesium transporter mgte 58 c3no7A_ not modelled 7.1 28 PDB header:dna binding protein Chain: A: PDB Molecule:putative plasmid related protein; PDBTitle: crystal structure of the centromere-binding protein parb from plasmid2 pcxc100 59 d1i0aa_ not modelled 7.0 15 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase 60 c1e3hA_ not modelled 6.9 12 PDB header:polyribonucleotide transferase Chain: A: PDB Molecule:guanosine pentaphosphate synthetase; PDBTitle: semet derivative of streptomyces antibioticus pnpase/gpsi2 enzyme 61 c1oy8A_ not modelled 6.8 13 PDB header:membrane protein Chain: A: PDB Molecule:acriflavine resistance protein b; PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump 62 d1kx5c_ not modelled 6.8 27 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 63 d1iwga8 not modelled 6.7 7 Fold:Multidrug efflux transporter AcrB transmembrane domain Superfamily:Multidrug efflux transporter AcrB transmembrane domain Family:Multidrug efflux transporter AcrB transmembrane domain 64 d1nh2d1 not modelled 6.7 18 Fold:Transcription factor IIA (TFIIA), alpha-helical domain Superfamily:Transcription factor IIA (TFIIA), alpha-helical domain Family:Transcription factor IIA (TFIIA), alpha-helical domain 65 d2p12a1 not modelled 6.5 12 Fold:FomD barrel-like Superfamily:FomD-like Family:FomD-like 66 d2oi8a2 not modelled 6.5 11 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 67 c3qh9A_ not modelled 6.4 16 PDB header:structural protein Chain: A: PDB Molecule:liprin-beta-2; PDBTitle: human liprin-beta2 coiled-coil 68 c2e9fC_ not modelled 6.3 24 PDB header:lyase Chain: C: PDB Molecule:argininosuccinate lyase; PDBTitle: crystal structure of t.th.hb8 argininosuccinate lyase complexed with2 l-arginine 69 c3zs9C_ not modelled 6.3 21 PDB header:hydrolase/transport protein Chain: C: PDB Molecule:golgi to er traffic protein 2; PDBTitle: s. cerevisiae get3-adp-alf4- complex with a cytosolic get2 fragment 70 d1q90g_ not modelled 6.3 18 Fold:Single transmembrane helix Superfamily:PetG subunit of the cytochrome b6f complex Family:PetG subunit of the cytochrome b6f complex 71 c1q90G_ not modelled 6.3 18 PDB header:photosynthesis Chain: G: PDB Molecule:cytochrome b6f complex subunit petg; PDBTitle: structure of the cytochrome b6f (plastohydroquinone : plastocyanin2 oxidoreductase) from chlamydomonas reinhardtii 72 c3sjdE_ not modelled 6.3 21 PDB header:hydrolase/transport protein Chain: E: PDB Molecule:golgi to er traffic protein 2; PDBTitle: crystal structure of s. cerevisiae get3 with bound adp-mg2+ in complex2 with get2 cytosolic domain 73 c3c8tA_ not modelled 6.3 11 PDB header:lyase Chain: A: PDB Molecule:fumarate lyase; PDBTitle: crystal structure of fumarate lyase from mesorhizobium sp. bnc1 74 d1id3c_ not modelled 6.3 27 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 75 d1eqza_ not modelled 6.2 27 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 76 c2p90B_ not modelled 6.2 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein cgl1923; PDBTitle: the crystal structure of a protein of unknown function from2 corynebacterium glutamicum atcc 13032 77 c2w6aB_ not modelled 6.2 16 PDB header:signaling protein Chain: B: PDB Molecule:arf gtpase-activating protein git1; PDBTitle: x-ray structure of the dimeric git1 coiled-coil domain 78 d2ftua1 not modelled 6.1 18 Fold:RAP domain-like Superfamily:RAP domain-like Family:RAP domain 79 c3q5dA_ not modelled 6.1 12 PDB header:hydrolase Chain: A: PDB Molecule:atlastin-1; PDBTitle: crystal structure of human atlastin-1 (residues 1-447) bound to gdp,2 crystal form 1 80 d1nvpd1 not modelled 6.0 15 Fold:Transcription factor IIA (TFIIA), alpha-helical domain Superfamily:Transcription factor IIA (TFIIA), alpha-helical domain Family:Transcription factor IIA (TFIIA), alpha-helical domain 81 c1s5lL_ not modelled 6.0 13 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: architecture of the photosynthetic oxygen evolving center 82 c3a0bl_ not modelled 6.0 13 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of br-substituted photosystem ii complex 83 c3kziL_ not modelled 6.0 13 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of monomeric form of cyanobacterial photosystem ii 84 c3prqL_ not modelled 6.0 13 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 1 of 2). this file contains first monomer of psii3 dimer 85 c3prrL_ not modelled 6.0 13 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 2 of 2). this file contains second monomer of psii3 dimer 86 c3a0hl_ not modelled 6.0 13 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of i-substituted photosystem ii complex 87 c3arcL_ not modelled 6.0 13 PDB header:electron transport, photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution 88 c3a0hL_ not modelled 6.0 13 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of i-substituted photosystem ii complex 89 c3a0bL_ not modelled 6.0 13 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of br-substituted photosystem ii complex 90 c1s5ll_ not modelled 6.0 13 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: architecture of the photosynthetic oxygen evolving center 91 c2axtL_ not modelled 6.0 13 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus 92 c2axtl_ not modelled 6.0 13 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus 93 c3bz2L_ not modelled 6.0 13 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii (part 22 of 2). this file contains second monomer of psii dimer 94 c3bz1L_ not modelled 6.0 13 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii (part 12 of 2). this file contains first monomer of psii dimer 95 d2axtl1 not modelled 6.0 13 Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein L, PsbL Family:PsbL-like 96 c3epvB_ not modelled 6.0 13 PDB header:metal binding protein Chain: B: PDB Molecule:nickel and cobalt resistance protein cnrr; PDBTitle: x-ray structure of the metal-sensor cnrx in both the apo- and copper-2 bound forms 97 d1q5na_ not modelled 5.9 11 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase 98 d1tj7a_ not modelled 5.9 15 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase 99 c3gaaB_ not modelled 5.9 2 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein ta1441; PDBTitle: the crystal structure of the protein with unknown function from2 thermoplasma acidophilum