Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP08201
DateThu Jan 5 11:00:55 GMT 2012
Unique Job ID27ed948b0b4e8aee

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3ntaA_
Top template information
PDB header:oxidoreductase
Chain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide
PDBTitle: structure of the shewanella loihica pv-4 nadh-dependent persulfide2 reductase
Confidence and coverage
Confidence:100.0% Coverage: 48%
407 residues ( 48% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
725 residues ( 86%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSKVRLAIIGNGMVGHRFIEDLLDKSDAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEE
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   .........70.........80.........90.........100.........110.........120
Sequence  LSLVREGFYEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIKG
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   .........130.........140.........150.........160.........170.........180
Sequence  SDTQDCFVYRTIEDLNAIESCARRSKRGAVVGGGLLGLEAAGALKNLGIETHVIEFAPML
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   .........190.........200.........210.........220.........230.........240
Sequence  MAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFS
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   .........250.........260.........270.........280.........290.........300
Sequence  TGIRPRDKLATQCGLDVAPRGGIVINDSCQTSDPDIYAIGECASWNNRVFGLVAPGYKMA
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   .........310.........320.........330.........340.........350.........360
Sequence  QVAVDHILGSENAFEGADLSAKLKLLGVDVGGIGDAHGRTPGARSYVYLDESKEIYKRLI
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   .........370.........380.........390.........400.........410.........420
Sequence  VSEDNKTLLGAVLVGDTSDYGNLLQLVLNAIELPENPDSLILPAHSGSGKPSIGVDKLPD
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   .........430.........440.........450.........460.........470.........480
Sequence  SAQICSCFDVTKGDLIAAINKGCHTVAALKAETKAGTGCGGCIPLVTQVLNAELAKQGIE
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??????
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   .........490.........500.........510.........520.........530.........540
Sequence  VNNNLCEHFAYSRQELFHLIRVEGIKTFEELLAKHGKGYGCEVCKPTVGSLLASCWNEYI
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?
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   .........550.........560.........570.........580.........590.........600
Sequence  LKPEHTPLQDSNDNFLANIQKDGTYSVIPRSPGGEITPEGLMAVGRIAREFNLYTKITGS
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Disorder 
???????
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?
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   .........610.........620.........630.........640.........650.........660
Sequence  QRLAMFGAQKDDLPEIWRQLIEAGFETGHAYAKALRMAKTCVGSTWCRYGVGDSVGLGVE
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   .........670.........680.........690.........700.........710.........720
Sequence  LENRYKGIRTPHKMKFGVSGCTRECSEAQGKDVGIIATEKGWNLYVCGNGGMKPRHADLL
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   .........730.........740.........750.........760.........770.........780
Sequence  AADIDRETLIKYLDRFMMFYIRTADKLTRTAPWLENLEGGIDYLKAVIIDDKLGLNAHLE
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   .........790.........800.........810.........820.........830.........840
Sequence  EEMARLREAVLCEWTETVNTPSAQTRFKHFINSDKRDPNVQMVPEREQHRPATPYERIPV
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?











?????
????
??????????????



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   .......
Sequence  TLVEDNA
Secondary structure 






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Disorder  ???????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3nta chain A

3D model

Region: 3 - 412
Aligned: 407
Modelled: 409
Confidence: 100.0%
Identity: 25%
PDB header:oxidoreductase
Chain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide
PDBTitle: structure of the shewanella loihica pv-4 nadh-dependent persulfide2 reductase

Phyre2

PDB 3icr chain A

3D model

Region: 4 - 412
Aligned: 402
Modelled: 409
Confidence: 100.0%
Identity: 23%
PDB header:oxidoreductase
Chain: A: PDB Molecule:coenzyme a-disulfide reductase;
PDBTitle: crystal structure of oxidized bacillus anthracis coadr-rhd

Phyre2

PDB 1zj8 chain B

3D model

Region: 490 - 770
Aligned: 274
Modelled: 281
Confidence: 100.0%
Identity: 19%
PDB header:oxidoreductase
Chain: B: PDB Molecule:probable ferredoxin-dependent nitrite reductase nira;
PDBTitle: structure of mycobacterium tuberculosis nira protein

Phyre2

PDB 1gv4 chain A

3D model

Region: 2 - 405
Aligned: 399
Modelled: 404
Confidence: 100.0%
Identity: 21%
PDB header:oxidoreductase
Chain: A: PDB Molecule:programed cell death protein 8;
PDBTitle: murine apoptosis-inducing factor (aif)

Phyre2

PDB 2akj chain A

3D model

Region: 549 - 774
Aligned: 225
Modelled: 226
Confidence: 100.0%
Identity: 17%
PDB header:oxidoreductase
Chain: A: PDB Molecule:ferredoxin--nitrite reductase, chloroplast;
PDBTitle: structure of spinach nitrite reductase

Phyre2

PDB 2gr2 chain A

3D model

Region: 1 - 404
Aligned: 385
Modelled: 402
Confidence: 100.0%
Identity: 23%
PDB header:oxidoreductase
Chain: A: PDB Molecule:ferredoxin reductase;
PDBTitle: crystal structure of ferredoxin reductase, bpha4 (oxidized form)

Phyre2

PDB 3lxd chain A

3D model

Region: 2 - 397
Aligned: 385
Modelled: 396
Confidence: 100.0%
Identity: 23%
PDB header:oxidoreductase
Chain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide
PDBTitle: crystal structure of ferredoxin reductase arr from novosphingobium2 aromaticivorans

Phyre2

PDB 1q1w chain A

3D model

Region: 2 - 394
Aligned: 383
Modelled: 393
Confidence: 100.0%
Identity: 23%
PDB header:oxidoreductase
Chain: A: PDB Molecule:putidaredoxin reductase;
PDBTitle: crystal structure of putidaredoxin reductase from2 pseudomonas putida

Phyre2

PDB 2v3a chain A

3D model

Region: 3 - 379
Aligned: 365
Modelled: 377
Confidence: 100.0%
Identity: 22%
PDB header:oxidoreductase
Chain: A: PDB Molecule:rubredoxin reductase;
PDBTitle: crystal structure of rubredoxin reductase from pseudomonas2 aeruginosa.

Phyre2

PDB 3oc4 chain A

3D model

Region: 5 - 412
Aligned: 384
Modelled: 394
Confidence: 100.0%
Identity: 21%
PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase, pyridine nucleotide-disulfide family;
PDBTitle: crystal structure of a pyridine nucleotide-disulfide family2 oxidoreductase from the enterococcus faecalis v583

Phyre2

PDB 1yqz chain A

3D model

Region: 4 - 412
Aligned: 397
Modelled: 409
Confidence: 100.0%
Identity: 20%
PDB header:oxidoreductase
Chain: A: PDB Molecule:coenzyme a disulfide reductase;
PDBTitle: structure of coenzyme a-disulfide reductase from2 staphylococcus aureus refined at 1.54 angstrom resolution

Phyre2

PDB 3fg2 chain P

3D model

Region: 5 - 397
Aligned: 381
Modelled: 393
Confidence: 100.0%
Identity: 22%
PDB header:oxidoreductase
Chain: P: PDB Molecule:putative rubredoxin reductase;
PDBTitle: crystal structure of ferredoxin reductase for the cyp199a2 system from2 rhodopseudomonas palustris

Phyre2

PDB 3iwa chain A

3D model

Region: 4 - 395
Aligned: 353
Modelled: 356
Confidence: 100.0%
Identity: 25%
PDB header:oxidoreductase
Chain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide
PDBTitle: crystal structure of a fad-dependent pyridine nucleotide-disulphide2 oxidoreductase from desulfovibrio vulgaris

Phyre2

PDB 2v4j chain E

3D model

Region: 559 - 768
Aligned: 208
Modelled: 210
Confidence: 100.0%
Identity: 18%
PDB header:oxidoreductase
Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit
PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration

Phyre2

PDB 3kd9 chain B

3D model

Region: 1 - 416
Aligned: 386
Modelled: 394
Confidence: 100.0%
Identity: 23%
PDB header:oxidoreductase
Chain: B: PDB Molecule:coenzyme a disulfide reductase;
PDBTitle: crystal structure of pyridine nucleotide disulfide oxidoreductase from2 pyrococcus horikoshii

Phyre2

PDB 3ef6 chain A

3D model

Region: 4 - 397
Aligned: 382
Modelled: 394
Confidence: 100.0%
Identity: 24%
PDB header:oxidoreductase
Chain: A: PDB Molecule:toluene 1,2-dioxygenase system ferredoxin--nad(+)
PDBTitle: crystal structure of toluene 2,3-dioxygenase reductase

Phyre2

PDB 2bcp chain A

3D model

Region: 1 - 410
Aligned: 404
Modelled: 410
Confidence: 100.0%
Identity: 22%
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh oxidase;
PDBTitle: structural analysis of streptococcus pyogenes nadh oxidase:2 c44s nox with azide

Phyre2

PDB 1m6i chain A

3D model

Region: 1 - 403
Aligned: 398
Modelled: 403
Confidence: 100.0%
Identity: 20%
PDB header:oxidoreductase
Chain: A: PDB Molecule:programmed cell death protein 8;
PDBTitle: crystal structure of apoptosis inducing factor (aif)

Phyre2

PDB 3c7b chain E

3D model

Region: 549 - 768
Aligned: 217
Modelled: 220
Confidence: 100.0%
Identity: 20%
PDB header:oxidoreductase
Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit beta;
PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus

Phyre2

PDB 3c7b chain A

3D model

Region: 552 - 768
Aligned: 215
Modelled: 217
Confidence: 100.0%
Identity: 18%
PDB header:oxidoreductase
Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit alpha;
PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus

Phyre2

PDB 2v4j chain A

3D model

Region: 565 - 768
Aligned: 202
Modelled: 202
Confidence: 100.0%
Identity: 22%
PDB header:oxidoreductase
Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit
PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration

Phyre2

PDB 2v4j chain A domain 3

3D model

Region: 632 - 807
Aligned: 173
Modelled: 173
Confidence: 100.0%
Identity: 17%
Fold: Nitrite and sulphite reductase 4Fe-4S domain-like
Superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like
Family: Nitrite and sulphite reductase 4Fe-4S domain-like

Phyre2
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c3ntaA_
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c3icrA_
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c1zj8B_
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c1gv4A_
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c2akjA_
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c2gr2A_
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c3lxdA_
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c1q1wA_
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c2v3aA_
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c3oc4A_
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c1yqzA_
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c3fg2P_
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c3iwaA_
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c2v4jE_
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c3kd9B_
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c3ef6A_
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c2bcpA_
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c1m6iA_
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c3c7bE_
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c3c7bA_
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c2v4jA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3ntaA_



100.0 25 PDB header:oxidoreductase
Chain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide
PDBTitle: structure of the shewanella loihica pv-4 nadh-dependent persulfide2 reductase
2c3icrA_



100.0 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:coenzyme a-disulfide reductase;
PDBTitle: crystal structure of oxidized bacillus anthracis coadr-rhd
3c1zj8B_



100.0 19 PDB header:oxidoreductase
Chain: B: PDB Molecule:probable ferredoxin-dependent nitrite reductase nira;
PDBTitle: structure of mycobacterium tuberculosis nira protein
4c1gv4A_



100.0 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:programed cell death protein 8;
PDBTitle: murine apoptosis-inducing factor (aif)
5c2akjA_



100.0 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:ferredoxin--nitrite reductase, chloroplast;
PDBTitle: structure of spinach nitrite reductase
6c2gr2A_



100.0 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:ferredoxin reductase;
PDBTitle: crystal structure of ferredoxin reductase, bpha4 (oxidized form)
7c3lxdA_



100.0 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide
PDBTitle: crystal structure of ferredoxin reductase arr from novosphingobium2 aromaticivorans
8c1q1wA_



100.0 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:putidaredoxin reductase;
PDBTitle: crystal structure of putidaredoxin reductase from2 pseudomonas putida
9c2v3aA_



100.0 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:rubredoxin reductase;
PDBTitle: crystal structure of rubredoxin reductase from pseudomonas2 aeruginosa.
10c3oc4A_



100.0 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase, pyridine nucleotide-disulfide family;
PDBTitle: crystal structure of a pyridine nucleotide-disulfide family2 oxidoreductase from the enterococcus faecalis v583
11c1yqzA_



100.0 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:coenzyme a disulfide reductase;
PDBTitle: structure of coenzyme a-disulfide reductase from2 staphylococcus aureus refined at 1.54 angstrom resolution
12c3fg2P_



100.0 22 PDB header:oxidoreductase
Chain: P: PDB Molecule:putative rubredoxin reductase;
PDBTitle: crystal structure of ferredoxin reductase for the cyp199a2 system from2 rhodopseudomonas palustris
13c3iwaA_



100.0 25 PDB header:oxidoreductase
Chain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide
PDBTitle: crystal structure of a fad-dependent pyridine nucleotide-disulphide2 oxidoreductase from desulfovibrio vulgaris
14c2v4jE_



100.0 18 PDB header:oxidoreductase
Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit
PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration
15c3kd9B_



100.0 23 PDB header:oxidoreductase
Chain: B: PDB Molecule:coenzyme a disulfide reductase;
PDBTitle: crystal structure of pyridine nucleotide disulfide oxidoreductase from2 pyrococcus horikoshii
16c3ef6A_



100.0 24 PDB header:oxidoreductase
Chain: A: PDB Molecule:toluene 1,2-dioxygenase system ferredoxin--nad(+)
PDBTitle: crystal structure of toluene 2,3-dioxygenase reductase
17c2bcpA_



100.0 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh oxidase;
PDBTitle: structural analysis of streptococcus pyogenes nadh oxidase:2 c44s nox with azide
18c1m6iA_



100.0 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:programmed cell death protein 8;
PDBTitle: crystal structure of apoptosis inducing factor (aif)
19c3c7bE_



100.0 20 PDB header:oxidoreductase
Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit beta;
PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus
20c3c7bA_



100.0 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit alpha;
PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus
21c3kljA_



not modelled 100.0 25 PDB header:oxidoreductase
Chain: A: PDB Molecule:nad(fad)-dependent dehydrogenase, nirb-family (n-terminal
PDBTitle: crystal structure of nadh:rubredoxin oxidoreductase from clostridium2 acetobutylicum
22c1nhqA_



not modelled 100.0 19 PDB header:oxidoreductase (h2o2(a))
Chain: A: PDB Molecule:nadh peroxidase;
PDBTitle: crystallographic analyses of nadh peroxidase cys42ala and cys42ser2 mutants: active site structure, mechanistic implications, and an3 unusual environment of arg303
23c2v4jA_



100.0 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit
PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration
24c2cduB_



not modelled 100.0 20 PDB header:oxidoreductase
Chain: B: PDB Molecule:nadph oxidase;
PDBTitle: the crystal structure of water-forming nad(p)h oxidase from2 lactobacillus sanfranciscensis
25c3cgdB_



not modelled 100.0 20 PDB header:oxidoreductase
Chain: B: PDB Molecule:pyridine nucleotide-disulfide oxidoreductase, class i;
PDBTitle: pyridine nucleotide complexes with bacillus anthracis coenzyme a-2 disulfide reductase: a structural analysis of dual nad(p)h3 specificity
26c1x31A_



not modelled 100.0 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:sarcosine oxidase alpha subunit;
PDBTitle: crystal structure of heterotetrameric sarcosine oxidase from2 corynebacterium sp. u-96
27c1y56A_



not modelled 100.0 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:hypothetical protein ph1363;
PDBTitle: crystal structure of l-proline dehydrogenase from p.horikoshii
28c2v6oA_



not modelled 100.0 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin glutathione reductase;
PDBTitle: structure of schistosoma mansoni thioredoxin-glutathione2 reductase (smtgr)
29c5aopA_



not modelled 100.0 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:sulfite reductase hemoprotein;
PDBTitle: sulfite reductase structure reduced with crii edta, 5-coordinate2 siroheme, siroheme feii, [4fe-4s] +1
30c1xhcA_



not modelled 100.0 29 PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh oxidase /nitrite reductase;
PDBTitle: nadh oxidase /nitrite reductase from pyrococcus furiosus pfu-1140779-2 001
31c1tytA_



not modelled 100.0 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:trypanothione reductase, oxidized form;
PDBTitle: crystal and molecular structure of crithidia fasciculata2 trypanothione reductase at 2.6 angstroms resolution
32c1xdiA_



not modelled 100.0 18 PDB header:unknown function
Chain: A: PDB Molecule:rv3303c-lpda;
PDBTitle: crystal structure of lpda (rv3303c) from mycobacterium tuberculosis
33c2qaeA_



not modelled 100.0 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydrolipoyl dehydrogenase;
PDBTitle: crystal structure analysis of trypanosoma cruzi lipoamide2 dehydrogenase
34c2eq7B_



not modelled 100.0 23 PDB header:oxidoreductase
Chain: B: PDB Molecule:2-oxoglutarate dehydrogenase e3 component;
PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdo
35c1ojtA_



not modelled 100.0 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:surface protein;
PDBTitle: structure of dihydrolipoamide dehydrogenase
36c2c3dB_



not modelled 100.0 19 PDB header:oxidoreductase
Chain: B: PDB Molecule:2-oxopropyl-com reductase;
PDBTitle: 2.15 angstrom crystal structure of 2-ketopropyl coenzyme m2 oxidoreductase carboxylase with a coenzyme m disulfide3 bound at the active site
37c2eq8E_



not modelled 100.0 22 PDB header:oxidoreductase
Chain: E: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide
PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdp
38c1lvlA_



not modelled 100.0 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydrolipoamide dehydrogenase;
PDBTitle: the refined structure of pseudomonas putida lipoamide dehydrogenase2 complexed with nad+ at 2.45 angstroms resolution
39c1zmcG_



not modelled 100.0 16 PDB header:oxidoreductase
Chain: G: PDB Molecule:dihydrolipoyl dehydrogenase;
PDBTitle: crystal structure of human dihydrolipoamide dehydrogenase2 complexed to nad+
40c1ebdB_



not modelled 100.0 18 PDB header:complex (oxidoreductase/transferase)
Chain: B: PDB Molecule:dihydrolipoamide dehydrogenase;
PDBTitle: dihydrolipoamide dehydrogenase complexed with the binding2 domain of the dihydrolipoamide acetylase
41c1bwcA_



not modelled 100.0 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:protein (glutathione reductase);
PDBTitle: structure of human glutathione reductase complexed with ajoene2 inhibitor and subversive substrate
42c3urhB_



not modelled 100.0 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:dihydrolipoyl dehydrogenase;
PDBTitle: crystal structure of a dihydrolipoamide dehydrogenase from2 sinorhizobium meliloti 1021
43c3ic9D_



not modelled 100.0 17 PDB header:oxidoreductase
Chain: D: PDB Molecule:dihydrolipoamide dehydrogenase;
PDBTitle: the structure of dihydrolipoamide dehydrogenase from colwellia2 psychrerythraea 34h.
44c1lpfB_



not modelled 100.0 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:dihydrolipoamide dehydrogenase;
PDBTitle: three-dimensional structure of lipoamide dehydrogenase from2 pseudomonas fluorescens at 2.8 angstroms resolution.3 analysis of redox and thermostability properties
45c1zx9A_



not modelled 100.0 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:mercuric reductase;
PDBTitle: crystal structure of tn501 mera
46c2a8xA_



not modelled 100.0 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydrolipoyl dehydrogenase;
PDBTitle: crystal structure of lipoamide dehydrogenase from2 mycobacterium tuberculosis
47c2w0hA_



not modelled 100.0 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:trypanothione reductase;
PDBTitle: x ray structure of leishmania infantum trypanothione2 reductase in complex with antimony and nadph
48c1dxlC_



not modelled 100.0 18 PDB header:oxidoreductase
Chain: C: PDB Molecule:dihydrolipoamide dehydrogenase;
PDBTitle: dihydrolipoamide dehydrogenase of glycine decarboxylase2 from pisum sativum
49c1v59B_



not modelled 100.0 18 PDB header:oxidoreductase
Chain: B: PDB Molecule:dihydrolipoamide dehydrogenase;
PDBTitle: crystal structure of yeast lipoamide dehydrogenase2 complexed with nad+
50c1geuA_



not modelled 100.0 19 PDB header:oxidoreductase(flavoenzyme)
Chain: A: PDB Molecule:glutathione reductase;
PDBTitle: anatomy of an engineered nad-binding site
51c3kpgA_



not modelled 100.0 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:sulfide-quinone reductase, putative;
PDBTitle: crystal structure of sulfide:quinone oxidoreductase from2 acidithiobacillus ferrooxidans in complex with decylubiquinone
52c1ndaD_



not modelled 100.0 18 PDB header:oxidoreductase
Chain: D: PDB Molecule:trypanothione oxidoreductase;
PDBTitle: the structure of trypanosoma cruzi trypanothione reductase2 in the oxidized and nadph reduced state
53c1fcdB_



not modelled 100.0 15 PDB header:electron transport(flavocytochrome)
Chain: B: PDB Molecule:flavocytochrome c sulfide dehydrogenase (flavin-
PDBTitle: the structure of flavocytochrome c sulfide dehydrogenase2 from a purple phototrophic bacterium chromatium vinosum at3 2.5 angstroms resolution
54c1hyuA_



not modelled 100.0 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:alkyl hydroperoxide reductase subunit f;
PDBTitle: crystal structure of intact ahpf
55c3dgzA_



not modelled 100.0 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase 2;
PDBTitle: crystal structure of mouse mitochondrial thioredoxin reductase, c-2 terminal 3-residue truncation
56c2hqmB_



not modelled 100.0 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:glutathione reductase;
PDBTitle: crystal structure of glutathione reductase glr1 from the yeast2 saccharomyces cerevisiae
57c2cfyB_



not modelled 100.0 15 PDB header:oxidoreductase
Chain: B: PDB Molecule:thioredoxin reductase 1;
PDBTitle: crystal structure of human thioredoxin reductase 1
58c2r9zB_



not modelled 100.0 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:glutathione amide reductase;
PDBTitle: glutathione amide reductase from chromatium gracile
59c3l8kB_



not modelled 100.0 14 PDB header:oxidoreductase
Chain: B: PDB Molecule:dihydrolipoyl dehydrogenase;
PDBTitle: crystal structure of a dihydrolipoyl dehydrogenase from2 sulfolobus solfataricus
60c1zkqA_



not modelled 100.0 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase 2, mitochondrial;
PDBTitle: crystal structure of mouse thioredoxin reductase type 2
61c1onfA_



not modelled 100.0 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:glutathione reductase;
PDBTitle: crystal structure of plasmodium falciparum glutathione reductase
62c2nvkX_



not modelled 100.0 16 PDB header:oxidoreductase
Chain: X: PDB Molecule:thioredoxin reductase;
PDBTitle: crystal structure of thioredoxin reductase from drosophila2 melanogaster
63c3o0hA_



not modelled 100.0 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:glutathione reductase;
PDBTitle: crystal structure of glutathione reductase from bartonella henselae
64c3hyxC_



not modelled 100.0 16 PDB header:oxidoreductase
Chain: C: PDB Molecule:sulfide-quinone reductase;
PDBTitle: 3-d x-ray structure of the sulfide:quinone oxidoreductase from aquifex2 aeolicus in complex with aurachin c
65c1gthD_



not modelled 100.0 16 PDB header:oxidoreductase
Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase;
PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil
66d1zj8a4



not modelled 100.0 19 Fold:Nitrite and sulphite reductase 4Fe-4S domain-like
Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like
Family:Nitrite and sulphite reductase 4Fe-4S domain-like
67d1aopa3



not modelled 100.0 18 Fold:Nitrite and sulphite reductase 4Fe-4S domain-like
Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like
Family:Nitrite and sulphite reductase 4Fe-4S domain-like
68d2akja4



not modelled 100.0 15 Fold:Nitrite and sulphite reductase 4Fe-4S domain-like
Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like
Family:Nitrite and sulphite reductase 4Fe-4S domain-like
69c3k30B_



not modelled 100.0 15 PDB header:oxidoreductase
Chain: B: PDB Molecule:histamine dehydrogenase;
PDBTitle: histamine dehydrogenase from nocardiodes simplex
70d2v4jb3



not modelled 100.0 19 Fold:Nitrite and sulphite reductase 4Fe-4S domain-like
Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like
Family:Nitrite and sulphite reductase 4Fe-4S domain-like
71d3c7ba3



not modelled 100.0 19 Fold:Nitrite and sulphite reductase 4Fe-4S domain-like
Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like
Family:Nitrite and sulphite reductase 4Fe-4S domain-like
72c1ps9A_



not modelled 100.0 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:2,4-dienoyl-coa reductase;
PDBTitle: the crystal structure and reaction mechanism of e. coli 2,4-2 dienoyl coa reductase
73d2v4ja3



100.0 17 Fold:Nitrite and sulphite reductase 4Fe-4S domain-like
Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like
Family:Nitrite and sulphite reductase 4Fe-4S domain-like
74c1djnB_



not modelled 100.0 14 PDB header:oxidoreductase
Chain: B: PDB Molecule:trimethylamine dehydrogenase;
PDBTitle: structural and biochemical characterization of recombinant wild type2 trimethylamine dehydrogenase from methylophilus methylotrophus (sp.3 w3a1)
75d3c7bb3



not modelled 100.0 17 Fold:Nitrite and sulphite reductase 4Fe-4S domain-like
Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like
Family:Nitrite and sulphite reductase 4Fe-4S domain-like
76c3d1cA_



not modelled 100.0 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:flavin-containing putative monooxygenase;
PDBTitle: crystal structure of flavin-containing putative monooxygenase2 (np_373108.1) from staphylococcus aureus mu50 at 2.40 a resolution
77c3h8lA_



not modelled 100.0 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh oxidase;
PDBTitle: the first x-ray structure of a sulfide:quinone2 oxidoreductase: insights into sulfide oxidation mechanism
78c2zbwA_



not modelled 100.0 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase;
PDBTitle: crystal structure of thioredoxin reductase-like protein from thermus2 thermophilus hb8
79d1zj8a3



not modelled 100.0 18 Fold:Nitrite and sulphite reductase 4Fe-4S domain-like
Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like
Family:Nitrite and sulphite reductase 4Fe-4S domain-like
80c2vdcI_



not modelled 100.0 16 PDB header:oxidoreductase
Chain: I: PDB Molecule:glutamate synthase [nadph] small chain;
PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications.
81c3r9uA_



not modelled 100.0 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase;
PDBTitle: thioredoxin-disulfide reductase from campylobacter jejuni.
82c3f8rD_



not modelled 99.9 21 PDB header:oxidoreductase
Chain: D: PDB Molecule:thioredoxin reductase (trxb-3);
PDBTitle: crystal structure of sulfolobus solfataricus thioredoxin2 reductase b3 in complex with two nadp molecules
83c1vdcA_



not modelled 99.9 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:nadph dependent thioredoxin reductase;
PDBTitle: structure of nadph dependent thioredoxin reductase
84c3ctyA_



not modelled 99.9 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase;
PDBTitle: crystal structure of t. acidophilum thioredoxin reductase
85c1lqtB_



not modelled 99.9 20 PDB header:oxidoreductase
Chain: B: PDB Molecule:fpra;
PDBTitle: a covalent modification of nadp+ revealed by the atomic resolution2 structure of fpra, a mycobacterium tuberculosis oxidoreductase
86c1cjcA_



not modelled 99.9 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:protein (adrenodoxin reductase);
PDBTitle: structure of adrenodoxin reductase of mitochondrial p4502 systems
87c3ab1B_



not modelled 99.9 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:ferredoxin--nadp reductase;
PDBTitle: crystal structure of ferredoxin nadp+ oxidoreductase
88c1fl2A_



not modelled 99.9 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:alkyl hydroperoxide reductase subunit f;
PDBTitle: catalytic core component of the alkylhydroperoxide reductase ahpf from2 e.coli
89c3d8xB_



not modelled 99.9 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:thioredoxin reductase 1;
PDBTitle: crystal structure of saccharomyces cerevisiae nadph dependent2 thioredoxin reductase 1
90d1aopa4



not modelled 99.9 14 Fold:Nitrite and sulphite reductase 4Fe-4S domain-like
Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like
Family:Nitrite and sulphite reductase 4Fe-4S domain-like
91c3s5wB_



not modelled 99.9 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:l-ornithine 5-monooxygenase;
PDBTitle: ornithine hydroxylase (pvda) from pseudomonas aeruginosa
92c3lzxB_



not modelled 99.9 19 PDB header:oxidoreductase
Chain: B: PDB Molecule:ferredoxin--nadp reductase 2;
PDBTitle: crystal structure of ferredoxin-nadp+ oxidoreductase from bacillus2 subtilis (form ii)
93c1f6mF_



not modelled 99.9 18 PDB header:oxidoreductase
Chain: F: PDB Molecule:thioredoxin reductase;
PDBTitle: crystal structure of a complex between thioredoxin2 reductase, thioredoxin, and the nadp+ analog, aadp+
94c3fbsB_



not modelled 99.9 19 PDB header:oxidoreductase
Chain: B: PDB Molecule:oxidoreductase;
PDBTitle: the crystal structure of the oxidoreductase from agrobacterium2 tumefaciens
95c2a87A_



not modelled 99.9 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase;
PDBTitle: crystal structure of m. tuberculosis thioredoxin reductase
96c2q0lA_



not modelled 99.9 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase;
PDBTitle: helicobacter pylori thioredoxin reductase reduced by sodium dithionite2 in complex with nadp+
97c2vq7B_



not modelled 99.9 22 PDB header:oxidoreductase
Chain: B: PDB Molecule:flavin-containing monooxygenase;
PDBTitle: bacterial flavin-containing monooxygenase in complex with2 nadp: native data
98d2akja3



not modelled 99.9 15 Fold:Nitrite and sulphite reductase 4Fe-4S domain-like
Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like
Family:Nitrite and sulphite reductase 4Fe-4S domain-like
99c2q7vA_



not modelled 99.9 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase;
PDBTitle: crystal structure of deinococcus radiodurans thioredoxin2 reductase
100c3gwdA_



not modelled 99.9 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:cyclohexanone monooxygenase;
PDBTitle: closed crystal structure of cyclohexanone monooxygenase
101c1w4xA_



not modelled 99.9 21 PDB header:oxygenase
Chain: A: PDB Molecule:phenylacetone monooxygenase;
PDBTitle: phenylacetone monooxygenase, a baeyer-villiger2 monooxygenase
102c1vqwB_



not modelled 99.9 16 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:protein with similarity to flavin-containing
PDBTitle: crystal structure of a protein with similarity to flavin-2 containing monooxygenases and to mammalian dimethylalanine3 monooxygenases
103d1zj8a2



not modelled 99.9 17 Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:Duplicated SiR/NiR-like domains 1 and 3
104d1gv4a1



not modelled 99.8 23 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
105d1d7ya1



not modelled 99.8 19 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
106d1q1ra1



not modelled 99.8 23 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
107d1xhca1



not modelled 99.8 25 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
108c2rghA_



not modelled 99.8 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:alpha-glycerophosphate oxidase;
PDBTitle: structure of alpha-glycerophosphate oxidase from2 streptococcus sp.: a template for the mitochondrial alpha-3 glycerophosphate dehydrogenase
109d1m6ia1



not modelled 99.8 23 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
110d1nhpa1



not modelled 99.8 22 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
111c3da1A_



not modelled 99.8 12 PDB header:oxidoreductase
Chain: A: PDB Molecule:glycerol-3-phosphate dehydrogenase;
PDBTitle: x-ray structure of the glycerol-3-phosphate dehydrogenase2 from bacillus halodurans complexed with fad. northeast3 structural genomics consortium target bhr167.
112c2rgoA_



not modelled 99.7 11 PDB header:oxidoreductase
Chain: A: PDB Molecule:alpha-glycerophosphate oxidase;
PDBTitle: structure of alpha-glycerophosphate oxidase from2 streptococcus sp.: a template for the mitochondrial alpha-3 glycerophosphate dehydrogenase
113d1d7ya2



not modelled 99.7 26 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
114d3grsa1



not modelled 99.7 12 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
115d1xdia1



not modelled 99.7 19 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
116d1mo9a1



not modelled 99.7 14 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
117d2akja2



not modelled 99.7 16 Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:Duplicated SiR/NiR-like domains 1 and 3
118d1nhpa2



not modelled 99.7 20 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
119d1q1ra2



not modelled 99.7 19 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
120d1fcda1



not modelled 99.7 21 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0