Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	Q	D	N	N	F	S	Q	G	P	V	P	Q	S	A	R	K	G	V	L	A	L	T	F	V	M	L	G	L	T	F	F	S	A	S	M	W	T	G	G	T	L	G	T	G	L	S	Y	H	D	F	F	L	A	V	L	I	G	N
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																																						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	L	L	G	I	Y	T	S	F	L	G	Y	I	G	A	K	T	G	L	T	T	H	L	L	A	R	F	S	F	G	V	K	G	S	W	L	P	S	L	L	L	G	G	T	Q	V	G	W	F	G	V	G	V	A	M	F	A	I	P	V
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	K	A	T	G	L	D	I	N	L	L	I	A	V	S	G	L	L	M	T	V	T	V	F	F	G	I	S	A	L	T	V	L	S	V	I	A	V	P	A	I	A	C	L	G	G	Y	S	V	W	L	A	V	N	G	M	G	G	L	D
Secondary structure
SS confidence
Disorder																																																											?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		A	L	K	A	V	V	P	A	Q	P	L	D	F	N	V	A	L	A	L	V	V	G	S	F	I	S	A	G	T	L	T	A	D	F	V	R	F	G	R	N	A	K	L	A	V	L	V	A	M	V	A	F	F	L	G	N	S	L	M	F
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		I	F	G	A	A	G	A	A	A	L	G	M	A	D	I	S	D	V	M	I	A	Q	G	L	L	L	P	A	I	V	V	L	G	L	N	I	W	T	T	N	D	N	A	L	Y	A	S	G	L	G	F	A	N	I	T	G	M	S	S	K
Secondary structure
SS confidence
Disorder																																																							?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		T	L	S	V	I	N	G	I	I	G	T	V	C	A	L	W	L	Y	N	N	F	V	G	W	L	T	F	L	S	A	A	I	P	P	V	G	G	V	I	I	A	D	Y	L	M	N	R	R	R	Y	E	H	F	A	T	T	R	M	M	S
Secondary structure
SS confidence
Disorder																																																						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Sequence		V	N	W	V	A	I	L	A	V	A	L	G	I	A	A	G	H	W	L	P	G	I	V	P	V	N	A	V	L	G	G	A	L	S	Y	L	I	L	N	P	I	L	N	R	K	T	T	A	A	M	T	H	V	E	A	N	S	V	E
Secondary structure
SS confidence
Disorder																					?																						?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2jln chain A Region: 2 - 419 Aligned: 415 Modelled: 415 Confidence: 100.0% Identity: 20% PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter Phyre2 PDB 2xq2 chain A Region: 19 - 418 Aligned: 387 Modelled: 400 Confidence: 99.4% Identity: 14% PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: structure of the k294a mutant of vsglt Phyre2 PDB 3gia chain A Region: 15 - 415 Aligned: 399 Modelled: 399 Confidence: 99.3% Identity: 13% PDB header:transport protein Chain: A: PDB Molecule:uncharacterized protein mj0609; PDBTitle: crystal structure of apct transporter Phyre2 PDB 3dh4 chain A Region: 16 - 419 Aligned: 391 Modelled: 391 Confidence: 99.2% Identity: 16% PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus Phyre2 PDB 3lrc chain C Region: 14 - 405 Aligned: 390 Modelled: 390 Confidence: 98.8% Identity: 11% PDB header:transport protein Chain: C: PDB Molecule:arginine/agmatine antiporter; PDBTitle: structure of e. coli adic (p1) Phyre2 PDB 3hfx chain A Region: 57 - 352 Aligned: 296 Modelled: 296 Confidence: 92.9% Identity: 10% PDB header:transport protein Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter; PDBTitle: crystal structure of carnitine transporter Phyre2 PDB 2a65 chain A domain 1 Region: 16 - 349 Aligned: 334 Modelled: 334 Confidence: 89.4% Identity: 14% Fold: SNF-like Superfamily: SNF-like Family: SNF-like Phyre2 PDB 3qnq chain D Region: 288 - 417 Aligned: 128 Modelled: 130 Confidence: 70.0% Identity: 14% PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system Phyre2 PDB 2w8a chain C Region: 57 - 359 Aligned: 303 Modelled: 303 Confidence: 53.0% Identity: 16% PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate Phyre2 PDB 2oar chain A domain 1 Region: 385 - 419 Aligned: 35 Modelled: 35 Confidence: 24.2% Identity: 11% Fold: Gated mechanosensitive channel Superfamily: Gated mechanosensitive channel Family: Gated mechanosensitive channel Phyre2 PDB 1bh0 chain A Region: 209 - 230 Aligned: 22 Modelled: 22 Confidence: 24.0% Identity: 23% PDB header:synthetic hormone Chain: A: PDB Molecule:glucagon; PDBTitle: structure of a glucagon analog Phyre2 PDB 2ke4 chain A Region: 4 - 18 Aligned: 13 Modelled: 15 Confidence: 19.8% Identity: 23% PDB header:membrane protein Chain: A: PDB Molecule:cdc42-interacting protein 4; PDBTitle: the nmr structure of the tc10 and cdc42 interacting domain2 of cip4 Phyre2 PDB 1nau chain A Region: 211 - 230 Aligned: 20 Modelled: 20 Confidence: 18.8% Identity: 10% PDB header:hormone/growth factor Chain: A: PDB Molecule:glucagon; PDBTitle: nmr solution structure of the glucagon antagonist [deshis1,2 desphe6, glu9]glucagon amide in the presence of3 perdeuterated dodecylphosphocholine micelles Phyre2 PDB 3o2t chain A Region: 1 - 17 Aligned: 17 Modelled: 17 Confidence: 18.5% Identity: 18% PDB header:protein binding Chain: A: PDB Molecule:symplekin; PDBTitle: crystal structure of the n-terminal domain of human symplekin Phyre2 PDB 3o2q chain D Region: 3 - 17 Aligned: 15 Modelled: 15 Confidence: 17.8% Identity: 20% PDB header:hydrolase Chain: D: PDB Molecule:symplekin; PDBTitle: crystal structure of the human symplekin-ssu72-ctd phosphopeptide2 complex Phyre2 PDB 3odr chain A Region: 3 - 17 Aligned: 15 Modelled: 15 Confidence: 17.8% Identity: 20% PDB header:protein binding Chain: A: PDB Molecule:symplekin; PDBTitle: crystal structure of the n-terminal domain of human symplekin Phyre2 PDB 3ods chain A Region: 3 - 17 Aligned: 15 Modelled: 15 Confidence: 15.3% Identity: 20% PDB header:protein binding Chain: A: PDB Molecule:symplekin; PDBTitle: crystal structure of the k185a mutant of the n-terminal domain of2 human symplekin Phyre2 PDB 3gs3 chain A Region: 2 - 17 Aligned: 16 Modelled: 16 Confidence: 14.7% Identity: 31% PDB header:transcription, protein binding Chain: A: PDB Molecule:symplekin; PDBTitle: structure of the n-terminal heat domain of symplekin from d.2 melanogaster Phyre2 PDB 2oar chain A Region: 385 - 419 Aligned: 35 Modelled: 35 Confidence: 13.8% Identity: 11% PDB header:membrane protein Chain: A: PDB Molecule:large-conductance mechanosensitive channel; PDBTitle: mechanosensitive channel of large conductance (mscl) Phyre2 PDB 1t98 chain A domain 1 Region: 337 - 348 Aligned: 12 Modelled: 12 Confidence: 11.2% Identity: 42% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: MukF N-terminal domain-like Phyre2 1 c2jlnA_ 2 c2xq2A_ 3 c3giaA_ 4 c3dh4A_ 5 c3lrcC_ 6 c3hfxA_ 7 d2a65a1 8 c3qnqD_ 9 c2w8aC_ 10 d2oara1 11 c1bh0A_ 12 c2ke4A_ 13 c1nauA_ 14 c3o2tA_ 15 c3o2qD_ 16 c3odrA_ 17 c3odsA_ 18 c3gs3A_ 19 c2oarA_ 20 d1t98a1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2jlnA_ 100.0 20 PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter 2 c2xq2A_ 99.4 14 PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: structure of the k294a mutant of vsglt 3 c3giaA_ 99.3 13 PDB header:transport protein Chain: A: PDB Molecule:uncharacterized protein mj0609; PDBTitle: crystal structure of apct transporter 4 c3dh4A_ 99.2 16 PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus 5 c3lrcC_ 98.8 11 PDB header:transport protein Chain: C: PDB Molecule:arginine/agmatine antiporter; PDBTitle: structure of e. coli adic (p1) 6 c3hfxA_ 92.9 10 PDB header:transport protein Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter; PDBTitle: crystal structure of carnitine transporter 7 d2a65a1 89.4 14 Fold:SNF-like Superfamily:SNF-like Family:SNF-like 8 c3qnqD_ 70.0 14 PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system 9 c2w8aC_ 53.0 16 PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate 10 d2oara1 24.2 11 Fold:Gated mechanosensitive channel Superfamily:Gated mechanosensitive channel Family:Gated mechanosensitive channel 11 c1bh0A_ 24.0 23 PDB header:synthetic hormone Chain: A: PDB Molecule:glucagon; PDBTitle: structure of a glucagon analog 12 c2ke4A_ 19.8 23 PDB header:membrane protein Chain: A: PDB Molecule:cdc42-interacting protein 4; PDBTitle: the nmr structure of the tc10 and cdc42 interacting domain2 of cip4 13 c1nauA_ 18.8 10 PDB header:hormone/growth factor Chain: A: PDB Molecule:glucagon; PDBTitle: nmr solution structure of the glucagon antagonist [deshis1,2 desphe6, glu9]glucagon amide in the presence of3 perdeuterated dodecylphosphocholine micelles 14 c3o2tA_ 18.5 18 PDB header:protein binding Chain: A: PDB Molecule:symplekin; PDBTitle: crystal structure of the n-terminal domain of human symplekin 15 c3o2qD_ 17.8 20 PDB header:hydrolase Chain: D: PDB Molecule:symplekin; PDBTitle: crystal structure of the human symplekin-ssu72-ctd phosphopeptide2 complex 16 c3odrA_ 17.8 20 PDB header:protein binding Chain: A: PDB Molecule:symplekin; PDBTitle: crystal structure of the n-terminal domain of human symplekin 17 c3odsA_ 15.3 20 PDB header:protein binding Chain: A: PDB Molecule:symplekin; PDBTitle: crystal structure of the k185a mutant of the n-terminal domain of2 human symplekin 18 c3gs3A_ 14.7 31 PDB header:transcription, protein binding Chain: A: PDB Molecule:symplekin; PDBTitle: structure of the n-terminal heat domain of symplekin from d.2 melanogaster 19 c2oarA_ 13.8 11 PDB header:membrane protein Chain: A: PDB Molecule:large-conductance mechanosensitive channel; PDBTitle: mechanosensitive channel of large conductance (mscl) 20 d1t98a1 11.2 42 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MukF N-terminal domain-like 21 c1d0rA_ not modelled 10.7 18 PDB header:hormone/growth factor Chain: A: PDB Molecule:glucagon-like peptide-1-(7-36)-amide; PDBTitle: solution structure of glucagon-like peptide-1-(7-36)-amide2 in trifluoroethanol/water 22 c2wj8N_ not modelled 10.7 15 PDB header:rna binding protein/rna Chain: N: PDB Molecule:nucleoprotein; PDBTitle: respiratory syncitial virus ribonucleoprotein 23 c2ntxB_ not modelled 10.7 19 PDB header:signaling protein Chain: B: PDB Molecule:emb cab41934.1; 24 d1mpga2 not modelled 10.5 13 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:DNA repair glycosylase, N-terminal domain 25 d1iyjb5 not modelled 9.7 22 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 26 c3mtvA_ not modelled 9.7 29 PDB header:hydrolase Chain: A: PDB Molecule:papain-like cysteine protease; PDBTitle: the crystal structure of the prrsv nonstructural protein nsp1 27 d1xrsb2 not modelled 9.6 29 Fold:Dodecin subunit-like Superfamily:D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain Family:D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain 28 c2kmgA_ not modelled 9.2 20 PDB header:gene regulation Chain: A: PDB Molecule:klca; PDBTitle: the structure of the klca and ardb proteins show a novel2 fold and antirestriction activity against type i dna3 restriction systems in vivo but not in vitro 29 c2bbjB_ not modelled 8.9 14 PDB header:metal transport/membrane protein Chain: B: PDB Molecule:divalent cation transport-related protein; PDBTitle: crystal structure of the cora mg2+ transporter 30 d2dnta1 not modelled 8.5 8 Fold:SH3-like barrel Superfamily:Chromo domain-like Family:Chromo domain 31 d1ci4a_ not modelled 7.8 14 Fold:SAM domain-like Superfamily:Barrier-to-autointegration factor, BAF Family:Barrier-to-autointegration factor, BAF 32 c3dvkB_ not modelled 7.5 30 PDB header:membrane protein Chain: B: PDB Molecule:voltage-dependent r-type calcium channel subunit alpha-1e; PDBTitle: crystal structure of ca2+/cam-cav2.3 iq domain complex 33 d3cx5e2 not modelled 7.3 18 Fold:Single transmembrane helix Superfamily:ISP transmembrane anchor Family:ISP transmembrane anchor 34 d1miua5 not modelled 7.3 20 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 35 c1jrjA_ not modelled 7.0 14 PDB header:hormone/growth factor Chain: A: PDB Molecule:exendin-4; PDBTitle: solution structure of exendin-4 in 30-vol% trifluoroethanol 36 c2czsB_ not modelled 6.9 19 PDB header:electron transport Chain: B: PDB Molecule:cytochrome c, putative; PDBTitle: crystal structure analysis of the diheme c-type cytochrome dhc2 37 c3c66B_ not modelled 6.7 14 PDB header:transferase Chain: B: PDB Molecule:poly(a) polymerase; PDBTitle: yeast poly(a) polymerase in complex with fip1 residues 80-105 38 c2lf6A_ not modelled 6.7 33 PDB header:signaling protein Chain: A: PDB Molecule:effector protein hopab1; PDBTitle: solution nmr structure of hopabpph1448_220_320 from pseudomonas2 syringae pv. phaseolicola str. 1448a, midwest center for structural3 genomics target apc40132.4 and northeast structural genomics4 consortium target pst3a 39 d1lgha_ not modelled 6.6 40 Fold:Light-harvesting complex subunits Superfamily:Light-harvesting complex subunits Family:Light-harvesting complex subunits 40 d1fcda2 not modelled 6.5 10 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 41 c3siqF_ not modelled 6.4 20 PDB header:ligase Chain: F: PDB Molecule:apoptosis 1 inhibitor; PDBTitle: crystal structure of autoinhibited diap1-bir1 domain 42 d1jj2y_ not modelled 6.4 33 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L37ae 43 c3g36D_ not modelled 6.3 21 PDB header:nuclear protein Chain: D: PDB Molecule:protein dpy-30 homolog; PDBTitle: crystal structure of the human dpy-30-like c-terminal domain 44 d1qi9a_ not modelled 6.2 25 Fold:Acid phosphatase/Vanadium-dependent haloperoxidase Superfamily:Acid phosphatase/Vanadium-dependent haloperoxidase Family:Haloperoxidase (bromoperoxidase) 45 c3ilaG_ not modelled 6.2 29 PDB header:signaling protein Chain: G: PDB Molecule:ryanodine receptor 1; PDBTitle: crystal structure of rabbit ryanodine receptor 1 n-terminal domain (9-2 205) 46 c1yshD_ not modelled 6.2 33 PDB header:structural protein/rna Chain: D: PDB Molecule:ribosomal protein l37a; PDBTitle: localization and dynamic behavior of ribosomal protein l30e 47 d1v4sa1 not modelled 6.1 17 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 48 c4a17Y_ not modelled 6.1 17 PDB header:ribosome Chain: Y: PDB Molecule:rpl37a; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 2. 49 c2kvlA_ not modelled 6.1 30 PDB header:viral protein Chain: A: PDB Molecule:major outer capsid protein vp7; PDBTitle: nmr structure of the c-terminal domain of vp7 50 d1bcce2 not modelled 6.1 13 Fold:Single transmembrane helix Superfamily:ISP transmembrane anchor Family:ISP transmembrane anchor 51 c2ht2B_ not modelled 6.0 14 PDB header:membrane protein Chain: B: PDB Molecule:h(+)/cl(-) exchange transporter clca; PDBTitle: structure of the escherichia coli clc chloride channel2 y445h mutant and fab complex 52 c2lf3A_ not modelled 5.9 17 PDB header:signaling protein Chain: A: PDB Molecule:effector protein hopab3; PDBTitle: solution nmr structure of hoppmal_281_385 from pseudomonas syringae2 pv. maculicola str. es4326, midwest center for structural genomics3 target apc40104.5 and northeast structural genomics consortium target4 pst2a 53 c3bxlB_ not modelled 5.9 21 PDB header:membrane protein, signaling protein Chain: B: PDB Molecule:voltage-dependent r-type calcium channel subunit PDBTitle: crystal structure of the r-type calcium channel (cav2.3) iq2 domain and ca2+calmodulin complex 54 d1rg6a_ not modelled 5.9 10 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 55 c1ciiA_ not modelled 5.9 12 PDB header:transmembrane protein Chain: A: PDB Molecule:colicin ia; PDBTitle: colicin ia 56 c3cc4Z_ not modelled 5.8 50 PDB header:ribosome Chain: Z: PDB Molecule:50s ribosomal protein l37ae; PDBTitle: co-crystal structure of anisomycin bound to the 50s ribosomal subunit 57 d2q66a1 not modelled 5.8 14 Fold:PAP/OAS1 substrate-binding domain Superfamily:PAP/OAS1 substrate-binding domain Family:Poly(A) polymerase, PAP, middle domain 58 c2qa4Z_ not modelled 5.8 44 PDB header:ribosome Chain: Z: PDB Molecule:50s ribosomal protein l37ae; PDBTitle: a more complete structure of the the l7/l12 stalk of the2 haloarcula marismortui 50s large ribosomal subunit 59 d1vqoz1 not modelled 5.8 44 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L37ae 60 d1ppje2 not modelled 5.8 27 Fold:Single transmembrane helix Superfamily:ISP transmembrane anchor Family:ISP transmembrane anchor 61 d2o8pa1 not modelled 5.7 33 Fold:alpha-alpha superhelix Superfamily:14-3-3 protein Family:14-3-3 protein 62 d1bg3a3 not modelled 5.6 13 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 63 d3bbda1 not modelled 5.6 8 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:EMG1/NEP1-like 64 d1wgma_ not modelled 5.5 7 Fold:RING/U-box Superfamily:RING/U-box Family:U-box 65 d1bdga1 not modelled 5.5 17 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 66 d1a7ja_ not modelled 5.5 8 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Phosphoribulokinase/pantothenate kinase 67 d1j72a1 not modelled 5.5 25 Fold:Gelsolin-like Superfamily:Actin depolymerizing proteins Family:Gelsolin-like 68 c2v6zM_ not modelled 5.5 7 PDB header:transferase Chain: M: PDB Molecule:dna polymerase epsilon subunit 2; PDBTitle: solution structure of amino terminal domain of human dna2 polymerase epsilon subunit b 69 d3efza1 not modelled 5.4 33 Fold:alpha-alpha superhelix Superfamily:14-3-3 protein Family:14-3-3 protein 70 c3efzA_ not modelled 5.4 33 PDB header:signaling protein Chain: A: PDB Molecule:14-3-3 protein; PDBTitle: crystal structure of a 14-3-3 protein from cryptosporidium parvum2 (cgd1_2980) 71 c2kncA_ not modelled 5.4 28 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 72 d1ffkw_ not modelled 5.4 40 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L37ae 73 c3o7bA_ not modelled 5.4 33 PDB header:transferase Chain: A: PDB Molecule:ribosome biogenesis nep1 rna methyltransferase; PDBTitle: crystal structure of archaeoglobus fulgidus nep1 bound to s-2 adenosylhomocysteine 74 c1afoB_ not modelled 5.4 17 PDB header:integral membrane protein Chain: B: PDB Molecule:glycophorin a; PDBTitle: dimeric transmembrane domain of human glycophorin a, nmr,2 20 structures 75 c2voyB_ not modelled 5.3 9 PDB header:hydrolase Chain: B: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus 76 c2w9jB_ not modelled 5.2 10 PDB header:signaling protein Chain: B: PDB Molecule:signal recognition particle subunit srp14; PDBTitle: the crystal structure of srp14 from the schizosaccharomyces2 pombe signal recognition particle 77 c2rowA_ not modelled 5.2 17 PDB header:transferase Chain: A: PDB Molecule:rho-associated protein kinase 2; PDBTitle: the c1 domain of rock ii 78 c2kb1A_ not modelled 5.2 16 PDB header:membrane protein Chain: A: PDB Molecule:wsk3; PDBTitle: nmr studies of a channel protein without membrane:2 structure and dynamics of water-solubilized kcsa 79 d1otsa_ not modelled 5.2 14 Fold:Clc chloride channel Superfamily:Clc chloride channel Family:Clc chloride channel 80 c1z65A_ not modelled 5.1 15 PDB header:unknown function Chain: A: PDB Molecule:prion-like protein doppel; PDBTitle: mouse doppel 1-30 peptide 81 c3jyw9_ not modelled 5.1 38 PDB header:ribosome Chain: 9: PDB Molecule:60s ribosomal protein l43; PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution 82 d2iuba2 not modelled 5.0 5 Fold:Transmembrane helix hairpin Superfamily:Magnesium transport protein CorA, transmembrane region Family:Magnesium transport protein CorA, transmembrane region 83 c3dvmB_ not modelled 5.0 13 PDB header:membrane protein Chain: B: PDB Molecule:voltage-dependent p/q-type calcium channel subunit alpha- PDBTitle: crystal structure of ca2+/cam-cav2.1 iq domain complex 84 d2jn4a1 not modelled 5.0 0 Fold:NifT/FixU barrel-like Superfamily:NifT/FixU-like Family:NifT/FixU

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0