Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	R	F	V	V	A	E	P	L	W	C	T	G	C	N	T	C	L	A	A	C	S	D	V	H	K	T	Q	G	L	Q	Q	H	P	R	L	A	L	A	K	T	S	T	I	T	A	P	V	V	C	H	H	C	E	E	A	P	C	L
Secondary structure
SS confidence
Disorder		?	?																												?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Q	V	C	P	V	N	A	I	S	Q	R	D	D	A	I	Q	L	N	E	S	L	C	I	G	C	K	L	C	A	V	V	C	P	F	G	A	I	S	A	S	G	S	R	P	V	N	A	H	A	Q	Y	V	F	Q	A	E	G	S	L	K
Secondary structure
SS confidence
Disorder																																												?	?	?	?	?										?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		D	G	E	E	N	A	P	T	Q	H	A	L	L	R	W	E	P	G	V	Q	T	V	A	V	K	C	D	L	C	D	F	L	P	E	G	P	A	C	V	R	A	C	P	N	Q	A	L	R	L	I	T	G	D	S	L	Q	R	Q	M	K
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Sequence		E	K	Q	R	L	A	A	S	W	F	A	N	G	G	E	D	P	L	S	L	T	Q	E	Q	R
Secondary structure
SS confidence
Disorder									?	?	?	?								?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1ti2 chain F Region: 1 - 197 Aligned: 160 Modelled: 160 Confidence: 100.0% Identity: 26% PDB header:oxidoreductase Chain: F: PDB Molecule:pyrogallol hydroxytransferase small subunit; PDBTitle: crystal structure of pyrogallol-phloroglucinol2 transhydroxylase from pelobacter acidigallici Phyre2 PDB 2ivf chain B Region: 3 - 197 Aligned: 158 Modelled: 158 Confidence: 100.0% Identity: 28% PDB header:oxidoreductase Chain: B: PDB Molecule:ethylbenzene dehydrogenase beta-subunit; PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum Phyre2 PDB 1kqf chain B Region: 2 - 201 Aligned: 163 Modelled: 163 Confidence: 100.0% Identity: 27% PDB header:oxidoreductase Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur PDBTitle: formate dehydrogenase n from e. coli Phyre2 PDB 1kqf chain B domain 1 Region: 1 - 201 Aligned: 164 Modelled: 164 Confidence: 100.0% Identity: 26% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 2vpy chain B Region: 1 - 197 Aligned: 159 Modelled: 159 Confidence: 100.0% Identity: 27% PDB header:oxidoreductase Chain: B: PDB Molecule:nrfc protein; PDBTitle: polysulfide reductase with bound quinone inhibitor,2 pentachlorophenol (pcp) Phyre2 PDB 1h0h chain B Region: 2 - 203 Aligned: 165 Modelled: 165 Confidence: 100.0% Identity: 20% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 1vlf chain N domain 2 Region: 1 - 197 Aligned: 160 Modelled: 160 Confidence: 100.0% Identity: 25% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 1y5i chain B domain 1 Region: 3 - 198 Aligned: 159 Modelled: 159 Confidence: 100.0% Identity: 30% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 7fd1 chain A Region: 45 - 108 Aligned: 64 Modelled: 64 Confidence: 99.5% Identity: 27% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: 7-Fe ferredoxin Phyre2 PDB 3gyx chain J Region: 5 - 152 Aligned: 91 Modelled: 91 Confidence: 99.4% Identity: 25% PDB header:oxidoreductase Chain: J: PDB Molecule:adenylylsulfate reductase; PDBTitle: crystal structure of adenylylsulfate reductase from2 desulfovibrio gigas Phyre2 PDB 2v2k chain B Region: 45 - 109 Aligned: 64 Modelled: 65 Confidence: 99.4% Identity: 22% PDB header:electron transport Chain: B: PDB Molecule:ferredoxin; PDBTitle: the crystal structure of fdxa, a 7fe ferredoxin from2 mycobacterium smegmatis Phyre2 PDB 2zvs chain B Region: 76 - 189 Aligned: 79 Modelled: 79 Confidence: 99.4% Identity: 25% PDB header:electron transport Chain: B: PDB Molecule:uncharacterized ferredoxin-like protein yfhl; PDBTitle: crystal structure of the 2[4fe-4s] ferredoxin from escherichia coli Phyre2 PDB 1h98 chain A Region: 45 - 108 Aligned: 64 Modelled: 64 Confidence: 99.4% Identity: 27% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: 7-Fe ferredoxin Phyre2 PDB 1bc6 chain A Region: 45 - 104 Aligned: 60 Modelled: 60 Confidence: 99.4% Identity: 32% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: 7-Fe ferredoxin Phyre2 PDB 1gth chain D Region: 6 - 113 Aligned: 70 Modelled: 70 Confidence: 99.3% Identity: 26% PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil Phyre2 PDB 3c8y chain A domain 3 Region: 1 - 99 Aligned: 72 Modelled: 72 Confidence: 99.3% Identity: 21% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 2fug chain 9 domain 1 Region: 77 - 175 Aligned: 74 Modelled: 80 Confidence: 99.3% Identity: 32% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 2fug chain G Region: 77 - 175 Aligned: 74 Modelled: 80 Confidence: 99.3% Identity: 32% PDB header:oxidoreductase Chain: G: PDB Molecule:nadh-quinone oxidoreductase chain 9; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus Phyre2 PDB 1blu chain A Region: 75 - 187 Aligned: 78 Modelled: 78 Confidence: 99.3% Identity: 28% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Short-chain ferredoxins Phyre2 PDB 2fgo chain A Region: 75 - 188 Aligned: 79 Modelled: 79 Confidence: 99.2% Identity: 29% PDB header:electron transport Chain: A: PDB Molecule:ferredoxin; PDBTitle: structure of the 2[4fe-4s] ferredoxin from pseudomonas2 aeruginosa Phyre2 1 c1ti2F_ 2 c2ivfB_ 3 c1kqfB_ 4 d1kqfb1 5 c2vpyB_ 6 d1h0hb_ 7 d1vlfn2 8 d1y5ib1 9 d7fd1a_ 10 c3gyxJ_ 11 c2v2kB_ 12 c2zvsB_ 13 d1h98a_ 14 d1bc6a_ 15 c1gthD_ 16 d3c8ya3 17 d2fug91 18 c2fugG_ 19 d1blua_ 20 c2fgoA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1ti2F_ 100.0 26 PDB header:oxidoreductase Chain: F: PDB Molecule:pyrogallol hydroxytransferase small subunit; PDBTitle: crystal structure of pyrogallol-phloroglucinol2 transhydroxylase from pelobacter acidigallici 2 c2ivfB_ 100.0 28 PDB header:oxidoreductase Chain: B: PDB Molecule:ethylbenzene dehydrogenase beta-subunit; PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum 3 c1kqfB_ 100.0 27 PDB header:oxidoreductase Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur PDBTitle: formate dehydrogenase n from e. coli 4 d1kqfb1 100.0 26 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 5 c2vpyB_ 100.0 27 PDB header:oxidoreductase Chain: B: PDB Molecule:nrfc protein; PDBTitle: polysulfide reductase with bound quinone inhibitor,2 pentachlorophenol (pcp) 6 d1h0hb_ 100.0 20 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 7 d1vlfn2 100.0 25 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 8 d1y5ib1 100.0 30 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 9 d7fd1a_ 99.5 27 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 10 c3gyxJ_ 99.4 25 PDB header:oxidoreductase Chain: J: PDB Molecule:adenylylsulfate reductase; PDBTitle: crystal structure of adenylylsulfate reductase from2 desulfovibrio gigas 11 c2v2kB_ 99.4 22 PDB header:electron transport Chain: B: PDB Molecule:ferredoxin; PDBTitle: the crystal structure of fdxa, a 7fe ferredoxin from2 mycobacterium smegmatis 12 c2zvsB_ 99.4 25 PDB header:electron transport Chain: B: PDB Molecule:uncharacterized ferredoxin-like protein yfhl; PDBTitle: crystal structure of the 2[4fe-4s] ferredoxin from escherichia coli 13 d1h98a_ 99.4 27 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 14 d1bc6a_ 99.4 32 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 15 c1gthD_ 99.3 26 PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil 16 d3c8ya3 99.3 21 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 17 d2fug91 99.3 32 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 18 c2fugG_ 99.3 32 PDB header:oxidoreductase Chain: G: PDB Molecule:nadh-quinone oxidoreductase chain 9; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 19 d1blua_ 99.3 28 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 20 c2fgoA_ 99.2 29 PDB header:electron transport Chain: A: PDB Molecule:ferredoxin; PDBTitle: structure of the 2[4fe-4s] ferredoxin from pseudomonas2 aeruginosa 21 d1rgva_ not modelled 99.2 24 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 22 d1hfel2 not modelled 99.2 41 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 23 d2fug34 not modelled 99.2 17 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 24 d1gtea5 not modelled 99.2 20 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 25 d1xera_ not modelled 99.2 22 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Archaeal ferredoxins 26 d2c42a5 not modelled 99.2 24 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 27 d1jnrb_ not modelled 99.1 25 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 28 d3c7bb1 not modelled 99.1 19 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 29 d1clfa_ not modelled 99.1 41 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 30 d2gmha3 not modelled 99.1 21 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:ETF-QO domain-like 31 c2gmhA_ not modelled 99.0 22 PDB header:oxidoreductase Chain: A: PDB Molecule:electron transfer flavoprotein-ubiquinone PDBTitle: structure of porcine electron transfer flavoprotein-2 ubiquinone oxidoreductase in complexed with ubiquinone 32 c1gx7A_ not modelled 99.0 43 PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic [fe] hydrogenase large subunit; PDBTitle: best model of the electron transfer complex between2 cytochrome c3 and [fe]-hydrogenase 33 d1iqza_ not modelled 99.0 14 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 34 d2fdna_ not modelled 99.0 39 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 35 d1jb0c_ not modelled 99.0 24 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 36 d1fcaa_ not modelled 99.0 35 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 37 c1c4cA_ not modelled 99.0 22 PDB header:oxidoreductase Chain: A: PDB Molecule:protein (fe-only hydrogenase); PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum 38 d1dura_ not modelled 99.0 35 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 39 c1hfeL_ not modelled 99.0 28 PDB header:hydrogenase Chain: L: PDB Molecule:protein (fe-only hydrogenase (e.c.1.18.99.1) PDBTitle: 1.6 a resolution structure of the fe-only hydrogenase from2 desulfovibrio desulfuricans 40 c2fugC_ not modelled 99.0 19 PDB header:oxidoreductase Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 41 c2c3yA_ not modelled 98.9 23 PDB header:oxidoreductase Chain: A: PDB Molecule:pyruvate-ferredoxin oxidoreductase; PDBTitle: crystal structure of the radical form of2 pyruvate:ferredoxin oxidoreductase from desulfovibrio3 africanus 42 d1vjwa_ not modelled 98.8 38 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 43 d1sj1a_ not modelled 98.5 23 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 44 c1dwlA_ not modelled 98.5 26 PDB header:electron transfer Chain: A: PDB Molecule:ferredoxin i; PDBTitle: the ferredoxin-cytochrome complex using heteronuclear nmr2 and docking simulation 45 c3c7bE_ not modelled 98.5 17 PDB header:oxidoreductase Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit beta; PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus 46 d1fxra_ not modelled 98.3 14 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 47 c3bk7A_ not modelled 98.2 40 PDB header:hydrolyase/translation Chain: A: PDB Molecule:abc transporter atp-binding protein; PDBTitle: structure of the complete abce1/rnaase-l inhibitor protein2 from pyrococcus abysii 48 c2v4jA_ not modelled 98.2 15 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration 49 c2v4jE_ not modelled 98.2 24 PDB header:oxidoreductase Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration 50 c3c7bA_ not modelled 98.2 22 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit alpha; PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus 51 d2bs2b1 not modelled 97.6 21 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain 52 d1nekb1 not modelled 97.6 17 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain 53 d1kf6b1 not modelled 97.5 21 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain 54 c1nekB_ not modelled 97.4 17 PDB header:oxidoreductase/electron transport Chain: B: PDB Molecule:succinate dehydrogenase iron-sulfur protein; PDBTitle: complex ii (succinate dehydrogenase) from e. coli with2 ubiquinone bound 55 c2h89B_ not modelled 97.2 13 PDB header:oxidoreductase Chain: B: PDB Molecule:succinate dehydrogenase ip subunit; PDBTitle: avian respiratory complex ii with malonate bound 56 c2b76N_ not modelled 96.8 17 PDB header:oxidoreductase Chain: N: PDB Molecule:fumarate reductase iron-sulfur protein; PDBTitle: e. coli quinol fumarate reductase frda e49q mutation 57 c2bs2E_ not modelled 96.7 22 PDB header:oxidoreductase Chain: E: PDB Molecule:quinol-fumarate reductase iron-sulfur subunit b; PDBTitle: quinol:fumarate reductase from wolinella succinogenes 58 d2v4jb1 not modelled 96.3 30 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 59 c3cf4A_ not modelled 96.2 32 PDB header:oxidoreductase Chain: A: PDB Molecule:acetyl-coa decarboxylase/synthase alpha subunit; PDBTitle: structure of the codh component of the m. barkeri acds complex 60 d3c7ba1 not modelled 93.7 24 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 61 d2v4ja1 not modelled 93.4 18 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 62 c2vdcI_ not modelled 84.0 19 PDB header:oxidoreductase Chain: I: PDB Molecule:glutamate synthase [nadph] small chain; PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications. 63 d1gtea1 not modelled 50.0 41 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Dihydropyrimidine dehydrogenase, N-terminal domain 64 d1fxda_ not modelled 44.7 27 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 65 c2a91A_ not modelled 24.6 27 PDB header:signaling protein,transferase,membrane p Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2; PDBTitle: crystal structure of erbb2 domains 1-3 66 d1djqa3 not modelled 17.6 33 Fold:Nucleotide-binding domain Superfamily:Nucleotide-binding domain Family:N-terminal domain of adrenodoxin reductase-like 67 d2r4qa1 not modelled 11.7 32 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Fructose specific IIB subunit-like 68 c1moxB_ not modelled 9.4 32 PDB header:transferase/growth factor Chain: B: PDB Molecule:epidermal growth factor receptor; PDBTitle: crystal structure of human epidermal growth factor receptor (residues2 1-501) in complex with tgf-alpha 69 d2hfqa1 not modelled 8.9 19 Fold:NE1680-like Superfamily:NE1680-like Family:NE1680-like 70 c2hfqA_ not modelled 8.9 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: nmr structure of protein ne1680 from nitrosomonas europaea:2 northeast structural genomics consortium target net5 71 d2r48a1 not modelled 7.8 23 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Fructose specific IIB subunit-like 72 c2eqpA_ not modelled 7.3 27 PDB header:transcription Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily PDBTitle: solution structure of the stn_tnfrsf12a_tnfr domain of2 tumor necrosis factor receptor superfamily member 12a3 precursor 73 d2i76a2 not modelled 5.9 5 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain 74 c2kn0A_ not modelled 5.7 27 PDB header:apoptosis Chain: A: PDB Molecule:fn14; PDBTitle: solution nmr structure of xenopus fn14

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0