Secondary structure and disorder prediction

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10

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20

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30

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40

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50

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Sequence

M

A

V

Q

Q

N

K

P

T

R

S

K

R

G

M

R

R

S

H

D

A

L

T

A

V

T

S

L

S

V

D

K

T

S

G

E

K

H

L

R

H

H

I

T

A

D

G

Y

Y

R

G

R

K

V

I

A

K

Secondary structure

SS confidence

Disorder

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Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2qam chain 0 domain 1 Region: 2 - 57 Aligned: 56 Modelled: 56 Confidence: 100.0% Identity: 100% Fold: Rubredoxin-like Superfamily: Zn-binding ribosomal proteins Family: Ribosomal protein L32p Phyre2 PDB 2zjr chain Z domain 1 Region: 2 - 56 Aligned: 54 Modelled: 55 Confidence: 99.9% Identity: 50% Fold: Rubredoxin-like Superfamily: Zn-binding ribosomal proteins Family: Ribosomal protein L32p Phyre2 PDB 2j01 chain 5 domain 1 Region: 2 - 56 Aligned: 54 Modelled: 55 Confidence: 99.9% Identity: 35% Fold: Rubredoxin-like Superfamily: Zn-binding ribosomal proteins Family: Ribosomal protein L32p Phyre2 PDB 3bbo chain 2 Region: 1 - 24 Aligned: 24 Modelled: 24 Confidence: 97.0% Identity: 21% PDB header:ribosome Chain: 2: PDB Molecule:ribosomal protein l32; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome Phyre2 PDB 2apo chain B domain 1 Region: 28 - 47 Aligned: 19 Modelled: 19 Confidence: 83.9% Identity: 21% Fold: Rubredoxin-like Superfamily: Nop10-like SnoRNP Family: Nucleolar RNA-binding protein Nop10-like Phyre2 PDB 2f9i chain D Region: 28 - 49 Aligned: 22 Modelled: 22 Confidence: 82.9% Identity: 5% PDB header:transferase Chain: D: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl PDBTitle: crystal structure of the carboxyltransferase subunit of acc2 from staphylococcus aureus Phyre2 PDB 2ey4 chain E domain 1 Region: 28 - 47 Aligned: 19 Modelled: 20 Confidence: 81.1% Identity: 16% Fold: Rubredoxin-like Superfamily: Nop10-like SnoRNP Family: Nucleolar RNA-binding protein Nop10-like Phyre2 PDB 1hk8 chain A Region: 26 - 54 Aligned: 29 Modelled: 29 Confidence: 78.9% Identity: 17% Fold: PFL-like glycyl radical enzymes Superfamily: PFL-like glycyl radical enzymes Family: Class III anaerobic ribonucleotide reductase NRDD subunit Phyre2 PDB 1hk8 chain A Region: 26 - 54 Aligned: 29 Modelled: 29 Confidence: 78.9% Identity: 17% PDB header:oxidoreductase Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase; PDBTitle: structural basis for allosteric substrate specificity2 regulation in class iii ribonucleotide reductases:3 nrdd in complex with dgtp Phyre2 PDB 1dvb chain A Region: 30 - 51 Aligned: 22 Modelled: 22 Confidence: 69.8% Identity: 9% PDB header:electron transport Chain: A: PDB Molecule:rubrerythrin; PDBTitle: rubrerythrin Phyre2 PDB 2kdx chain A Region: 22 - 54 Aligned: 33 Modelled: 33 Confidence: 67.1% Identity: 3% PDB header:metal-binding protein Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein PDBTitle: solution structure of hypa protein Phyre2 PDB 2f9y chain B domain 1 Region: 28 - 49 Aligned: 22 Modelled: 22 Confidence: 64.9% Identity: 9% Fold: ClpP/crotonase Superfamily: ClpP/crotonase Family: Biotin dependent carboxylase carboxyltransferase domain Phyre2 PDB 2f9y chain B Region: 28 - 49 Aligned: 22 Modelled: 22 Confidence: 64.9% Identity: 9% PDB header:ligase Chain: B: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl transferase subunit PDBTitle: the crystal structure of the carboxyltransferase subunit of acc from2 escherichia coli Phyre2 PDB 1i3q chain I Region: 25 - 48 Aligned: 24 Modelled: 24 Confidence: 64.5% Identity: 17% PDB header:transcription Chain: I: PDB Molecule:dna-directed rna polymerase ii 14.2kd PDBTitle: rna polymerase ii crystal form i at 3.1 a resolution Phyre2 PDB 2akl chain A domain 2 Region: 27 - 48 Aligned: 22 Modelled: 22 Confidence: 62.7% Identity: 5% Fold: Rubredoxin-like Superfamily: Zinc beta-ribbon Family: PhnA zinc-binding domain Phyre2 PDB 2hr5 chain B Region: 26 - 57 Aligned: 32 Modelled: 32 Confidence: 59.4% Identity: 9% PDB header:metal binding protein Chain: B: PDB Molecule:rubrerythrin; PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form Phyre2 PDB 2lcq chain A Region: 30 - 57 Aligned: 27 Modelled: 28 Confidence: 58.2% Identity: 22% PDB header:metal binding protein Chain: A: PDB Molecule:putative toxin vapc6; PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii Phyre2 PDB 1yuz chain B Region: 30 - 51 Aligned: 21 Modelled: 22 Confidence: 57.1% Identity: 10% PDB header:oxidoreductase Chain: B: PDB Molecule:nigerythrin; PDBTitle: partially reduced state of nigerythrin Phyre2 PDB 2akl chain A Region: 25 - 48 Aligned: 24 Modelled: 24 Confidence: 56.7% Identity: 8% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:phna-like protein pa0128; PDBTitle: solution structure for phn-a like protein pa0128 from2 pseudomonas aeruginosa Phyre2 PDB 2gnr chain A domain 1 Region: 28 - 47 Aligned: 20 Modelled: 20 Confidence: 54.0% Identity: 10% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: SSO2064-like Phyre2 1 d2qam01 2 d2zjrz1 3 d2j0151 4 c3bbo2_ 5 d2apob1 6 c2f9iD_ 7 d2ey4e1 8 d1hk8a_ 9 c1hk8A_ 10 c1dvbA_ 11 c2kdxA_ 12 d2f9yb1 13 c2f9yB_ 14 c1i3qI_ 15 d2akla2 16 c2hr5B_ 17 c2lcqA_ 18 c1yuzB_ 19 c2aklA_ 20 d2gnra1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2qam01 100.0 100 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L32p 2 d2zjrz1 99.9 50 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L32p 3 d2j0151 99.9 35 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L32p 4 c3bbo2_ 97.0 21 PDB header:ribosome Chain: 2: PDB Molecule:ribosomal protein l32; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 5 d2apob1 83.9 21 Fold:Rubredoxin-like Superfamily:Nop10-like SnoRNP Family:Nucleolar RNA-binding protein Nop10-like 6 c2f9iD_ 82.9 5 PDB header:transferase Chain: D: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl PDBTitle: crystal structure of the carboxyltransferase subunit of acc2 from staphylococcus aureus 7 d2ey4e1 81.1 16 Fold:Rubredoxin-like Superfamily:Nop10-like SnoRNP Family:Nucleolar RNA-binding protein Nop10-like 8 d1hk8a_ 78.9 17 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:Class III anaerobic ribonucleotide reductase NRDD subunit 9 c1hk8A_ 78.9 17 PDB header:oxidoreductase Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase; PDBTitle: structural basis for allosteric substrate specificity2 regulation in class iii ribonucleotide reductases:3 nrdd in complex with dgtp 10 c1dvbA_ 69.8 9 PDB header:electron transport Chain: A: PDB Molecule:rubrerythrin; PDBTitle: rubrerythrin 11 c2kdxA_ 67.1 3 PDB header:metal-binding protein Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein PDBTitle: solution structure of hypa protein 12 d2f9yb1 64.9 9 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 13 c2f9yB_ 64.9 9 PDB header:ligase Chain: B: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl transferase subunit PDBTitle: the crystal structure of the carboxyltransferase subunit of acc from2 escherichia coli 14 c1i3qI_ 64.5 17 PDB header:transcription Chain: I: PDB Molecule:dna-directed rna polymerase ii 14.2kd PDBTitle: rna polymerase ii crystal form i at 3.1 a resolution 15 d2akla2 62.7 5 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:PhnA zinc-binding domain 16 c2hr5B_ 59.4 9 PDB header:metal binding protein Chain: B: PDB Molecule:rubrerythrin; PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form 17 c2lcqA_ 58.2 22 PDB header:metal binding protein Chain: A: PDB Molecule:putative toxin vapc6; PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii 18 c1yuzB_ 57.1 10 PDB header:oxidoreductase Chain: B: PDB Molecule:nigerythrin; PDBTitle: partially reduced state of nigerythrin 19 c2aklA_ 56.7 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:phna-like protein pa0128; PDBTitle: solution structure for phn-a like protein pa0128 from2 pseudomonas aeruginosa 20 d2gnra1 54.0 10 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:SSO2064-like 21 c3k7aM_ not modelled 53.5 12 PDB header:transcription Chain: M: PDB Molecule:transcription initiation factor iib; PDBTitle: crystal structure of an rna polymerase ii-tfiib complex 22 d1dl6a_ not modelled 52.9 10 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 23 d2k4xa1 not modelled 52.6 26 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein S27a 24 d2ct7a1 not modelled 52.6 7 Fold:RING/U-box Superfamily:RING/U-box Family:IBR domain 25 c3a44D_ not modelled 51.2 8 PDB header:metal binding protein Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa; PDBTitle: crystal structure of hypa in the dimeric form 26 c2qkdA_ not modelled 44.4 20 PDB header:signaling protein, cell cycle Chain: A: PDB Molecule:zinc finger protein zpr1; PDBTitle: crystal structure of tandem zpr1 domains 27 d1pfta_ not modelled 38.4 21 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 28 c2gb5B_ not modelled 36.8 6 PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution 29 c3gn5B_ not modelled 32.8 19 PDB header:dna binding protein Chain: B: PDB Molecule:hth-type transcriptional regulator mqsa (ygit/b3021); PDBTitle: structure of the e. coli protein mqsa (ygit/b3021) 30 c3h0gI_ not modelled 30.6 5 PDB header:transcription Chain: I: PDB Molecule:dna-directed rna polymerase ii subunit rpb9; PDBTitle: rna polymerase ii from schizosaccharomyces pombe 31 d1lkoa2 not modelled 29.2 16 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 32 c3na7A_ not modelled 26.2 10 PDB header:gene regulation, chaperone Chain: A: PDB Molecule:hp0958; PDBTitle: 2.2 angstrom structure of the hp0958 protein from helicobacter pylori2 ccug 17874 33 c3mkrB_ not modelled 25.5 13 PDB header:transport protein Chain: B: PDB Molecule:coatomer subunit alpha; PDBTitle: crystal structure of yeast alpha/epsilon-cop subcomplex of the copi2 vesicular coat 34 c3mv2A_ not modelled 25.4 17 PDB header:protein transport Chain: A: PDB Molecule:coatomer subunit alpha; PDBTitle: crystal structure of a-cop in complex with e-cop 35 c3cngC_ not modelled 24.8 29 PDB header:hydrolase Chain: C: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea 36 c2zkr2_ not modelled 24.4 23 PDB header:ribosomal protein/rna Chain: 2: PDB Molecule:60s ribosomal protein l37e; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 37 d1odha_ not modelled 22.9 12 Fold:GCM domain Superfamily:GCM domain Family:GCM domain 38 d2g45a1 not modelled 21.8 5 Fold:RING/U-box Superfamily:RING/U-box Family:Zf-UBP 39 c3jywY_ not modelled 21.0 23 PDB header:ribosome Chain: Y: PDB Molecule:60s ribosomal protein l37(a); PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution 40 c1s1iY_ not modelled 19.4 20 PDB header:ribosome Chain: Y: PDB Molecule:60s ribosomal protein l37-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 41 d1nuia2 not modelled 19.2 11 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:DNA primase zinc finger 42 d2vuti1 not modelled 19.1 19 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Erythroid transcription factor GATA-1 43 d2aqaa1 not modelled 18.8 40 Fold:Rubredoxin-like Superfamily:Nop10-like SnoRNP Family:Nucleolar RNA-binding protein Nop10-like 44 d1yuza2 not modelled 18.8 11 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 45 c2k2dA_ not modelled 18.7 8 PDB header:metal binding protein Chain: A: PDB Molecule:ring finger and chy zinc finger domain- PDBTitle: solution nmr structure of c-terminal domain of human pirh2.2 northeast structural genomics consortium (nesg) target ht2c 46 c3lpeF_ not modelled 17.7 5 PDB header:transferase Chain: F: PDB Molecule:dna-directed rna polymerase subunit e''; PDBTitle: crystal structure of spt4/5ngn heterodimer complex from methanococcus2 jannaschii 47 d1d5ta2 not modelled 17.2 40 Fold:FAD-linked reductases, C-terminal domain Superfamily:FAD-linked reductases, C-terminal domain Family:GDI-like 48 d2cona1 not modelled 17.2 18 Fold:Rubredoxin-like Superfamily:NOB1 zinc finger-like Family:NOB1 zinc finger-like 49 c1x31D_ not modelled 16.6 25 PDB header:oxidoreductase Chain: D: PDB Molecule:sarcosine oxidase delta subunit; PDBTitle: crystal structure of heterotetrameric sarcosine oxidase from2 corynebacterium sp. u-96 50 d2bcgg3 not modelled 16.2 30 Fold:FAD-linked reductases, C-terminal domain Superfamily:FAD-linked reductases, C-terminal domain Family:GDI-like 51 c3bvoA_ not modelled 15.9 12 PDB header:chaperone Chain: A: PDB Molecule:co-chaperone protein hscb, mitochondrial precursor; PDBTitle: crystal structure of human co-chaperone protein hscb 52 d1vqo11 not modelled 15.2 14 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L37e 53 c2y0fD_ not modelled 15.1 5 PDB header:oxidoreductase Chain: D: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; PDBTitle: structure of gcpe (ispg) from thermus thermophilus hb27 54 d2dloa1 not modelled 14.5 18 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 55 c2opfA_ not modelled 14.2 6 PDB header:hydrolase/dna Chain: A: PDB Molecule:endonuclease viii; PDBTitle: crystal structure of the dna repair enzyme endonuclease-viii (nei)2 from e. coli (r252a) in complex with ap-site containing dna substrate 56 c2nn6I_ not modelled 13.7 11 PDB header:hydrolase/transferase Chain: I: PDB Molecule:3'-5' exoribonuclease csl4 homolog; PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40 57 c2ktvA_ not modelled 13.3 32 PDB header:translation Chain: A: PDB Molecule:eukaryotic peptide chain release factor subunit 1; PDBTitle: human erf1 c-domain, "open" conformer 58 c4a17Y_ not modelled 13.2 11 PDB header:ribosome Chain: Y: PDB Molecule:rpl37a; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 2. 59 c2ba1B_ not modelled 13.0 15 PDB header:rna binding protein Chain: B: PDB Molecule:archaeal exosome rna binding protein csl4; PDBTitle: archaeal exosome core 60 d1wgma_ not modelled 13.0 3 Fold:RING/U-box Superfamily:RING/U-box Family:U-box 61 c2k5cA_ not modelled 13.0 10 PDB header:metal binding protein Chain: A: PDB Molecule:uncharacterized protein pf0385; PDBTitle: nmr structure for pf0385 62 c2ecvA_ not modelled 12.9 13 PDB header:ligase Chain: A: PDB Molecule:tripartite motif-containing protein 5; PDBTitle: solution structure of the zinc finger, c3hc4 type (ring2 finger) domain of tripartite motif-containing protein 5 63 c3n40P_ not modelled 12.7 19 PDB header:viral protein Chain: P: PDB Molecule:p62 envelope glycoprotein; PDBTitle: crystal structure of the immature envelope glycoprotein complex of2 chikungunya virus. 64 c2gviA_ not modelled 12.4 14 PDB header:oxidoreductase Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of a putative formylmethanofuran dehydrogenase2 subunit e (ta1109) from thermoplasma acidophilum at 1.87 a resolution 65 d1vqoz1 not modelled 12.3 21 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L37ae 66 c2odxA_ not modelled 12.2 8 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c oxidase polypeptide iv; PDBTitle: solution structure of zn(ii)cox4 67 d1jj2y_ not modelled 12.1 32 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L37ae 68 d1q1aa_ not modelled 12.1 10 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators 69 c1yshD_ not modelled 12.0 16 PDB header:structural protein/rna Chain: D: PDB Molecule:ribosomal protein l37a; PDBTitle: localization and dynamic behavior of ribosomal protein l30e 70 d1pfva3 not modelled 12.0 6 Fold:Rubredoxin-like Superfamily:Methionyl-tRNA synthetase (MetRS), Zn-domain Family:Methionyl-tRNA synthetase (MetRS), Zn-domain 71 c2zkrz_ not modelled 11.7 11 PDB header:ribosomal protein/rna Chain: Z: PDB Molecule:e site t-rna; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 72 c1s1i9_ not modelled 11.7 16 PDB header:ribosome Chain: 9: PDB Molecule:60s ribosomal protein l43; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 73 c3jyw9_ not modelled 11.3 16 PDB header:ribosome Chain: 9: PDB Molecule:60s ribosomal protein l43; PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution 74 c2qa4Z_ not modelled 10.8 21 PDB header:ribosome Chain: Z: PDB Molecule:50s ribosomal protein l37ae; PDBTitle: a more complete structure of the the l7/l12 stalk of the2 haloarcula marismortui 50s large ribosomal subunit 75 c3cc4Z_ not modelled 10.7 21 PDB header:ribosome Chain: Z: PDB Molecule:50s ribosomal protein l37ae; PDBTitle: co-crystal structure of anisomycin bound to the 50s ribosomal subunit 76 c1u5kA_ not modelled 10.7 8 PDB header:recombination,replication Chain: A: PDB Molecule:hypothetical protein; PDBTitle: recombinational repair protein reco 77 d1lv3a_ not modelled 10.6 23 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Hypothetical zinc finger protein YacG 78 c3glsC_ not modelled 10.5 0 PDB header:hydrolase Chain: C: PDB Molecule:nad-dependent deacetylase sirtuin-3, PDBTitle: crystal structure of human sirt3 79 c2joxA_ not modelled 10.4 25 PDB header:transcription Chain: A: PDB Molecule:churchill protein; PDBTitle: embryonic neural inducing factor churchill is not a dna-2 binding zinc finger protein: solution structure reveals a3 solvent-exposed beta-sheet and zinc binuclear cluster 80 d1p91a_ not modelled 10.3 11 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:rRNA methyltransferase RlmA 81 d1y0ja1 not modelled 10.2 40 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Erythroid transcription factor GATA-1 82 d1ffkw_ not modelled 10.2 26 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L37ae 83 c2kreA_ not modelled 10.0 9 PDB header:protein binding Chain: A: PDB Molecule:ubiquitin conjugation factor e4 b; PDBTitle: solution structure of e4b/ufd2a u-box domain 84 c3noyA_ not modelled 9.6 20 PDB header:oxidoreductase Chain: A: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; PDBTitle: crystal structure of ispg (gcpe) 85 d1yc5a1 not modelled 9.3 0 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators 86 c1ee8A_ not modelled 9.0 12 PDB header:dna binding protein Chain: A: PDB Molecule:mutm (fpg) protein; PDBTitle: crystal structure of mutm (fpg) protein from thermus thermophilus hb8 87 d1wiia_ not modelled 8.9 7 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Putative zinc binding domain 88 c3d00A_ not modelled 8.8 9 PDB header:metal binding protein Chain: A: PDB Molecule:tungsten formylmethanofuran dehydrogenase subunit e; PDBTitle: crystal structure of a tungsten formylmethanofuran dehydrogenase2 subunit e (fmde)-like protein (syn_00638) from syntrophus3 aciditrophicus at 1.90 a resolution 89 c2pziA_ not modelled 8.8 11 PDB header:transferase Chain: A: PDB Molecule:probable serine/threonine-protein kinase pkng; PDBTitle: crystal structure of protein kinase pkng from mycobacterium2 tuberculosis in complex with tetrahydrobenzothiophene ax20017 90 c1vddC_ not modelled 8.5 11 PDB header:recombination Chain: C: PDB Molecule:recombination protein recr; PDBTitle: crystal structure of recombinational repair protein recr 91 c2ecyA_ not modelled 8.2 13 PDB header:apoptosis Chain: A: PDB Molecule:tnf receptor-associated factor 3; PDBTitle: solution structure of the zinc finger, c3hc4 type (ring2 finger)" domain of tnf receptor-associated factor 3 92 c1pqvS_ not modelled 8.2 15 PDB header:transferase/transcription Chain: S: PDB Molecule:transcription elongation factor s-ii; PDBTitle: rna polymerase ii-tfiis complex 93 c1k82D_ not modelled 8.1 6 PDB header:hydrolase/dna Chain: D: PDB Molecule:formamidopyrimidine-dna glycosylase; PDBTitle: crystal structure of e.coli formamidopyrimidine-dna2 glycosylase (fpg) covalently trapped with dna 94 d1k81a_ not modelled 8.1 11 Fold:Zinc-binding domain of translation initiation factor 2 beta Superfamily:Zinc-binding domain of translation initiation factor 2 beta Family:Zinc-binding domain of translation initiation factor 2 beta 95 c1nnjA_ not modelled 8.1 6 PDB header:hydrolase Chain: A: PDB Molecule:formamidopyrimidine-dna glycosylase; PDBTitle: crystal structure complex between the lactococcus lactis fpg and an2 abasic site containing dna 96 d1m2ka_ not modelled 7.9 11 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators 97 c1y1yS_ not modelled 7.8 15 PDB header:transferase/transcription/dna-rna hybrid Chain: S: PDB Molecule:transcription elongation factor s-ii; PDBTitle: rna polymerase ii-tfiis-dna/rna complex 98 d6rxna_ not modelled 7.7 11 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 99 d1hcna_ not modelled 7.7 44 Fold:Cystine-knot cytokines Superfamily:Cystine-knot cytokines Family:Gonadodropin/Follitropin

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0