Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	P	G	L	K	I	T	L	L	Q	Q	P	L	V	W	M	D	G	P	A	N	L	R	H	F	D	R	Q	L	E	G	I	T	G	R	D	V	I	V	L	P	E	M	F	T	S	G	F	A	M	E	A	A	A	S	S	L	A	Q	D
Secondary structure
SS confidence
Disorder		?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	V	V	N	W	M	T	A	K	A	Q	Q	C	N	A	L	I	A	G	S	V	A	L	Q	T	E	S	G	S	V	N	R	F	L	L	V	E	P	G	G	T	V	H	F	Y	D	K	R	H	L	F	R	M	A	D	E	H	L	H	Y
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		K	A	G	N	A	R	V	I	V	E	W	R	G	W	R	I	L	P	L	V	C	Y	D	L	R	F	P	V	W	S	R	N	L	N	D	Y	D	L	A	L	Y	V	A	N	W	P	A	P	R	S	L	H	W	Q	A	L	L	T	A	R
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		A	I	E	N	Q	A	Y	V	A	G	C	N	R	V	G	S	D	G	N	G	C	H	Y	R	G	D	S	R	V	I	N	P	Q	G	E	I	I	A	T	A	D	A	H	Q	A	T	R	I	D	A	E	L	S	M	A	A	L	R	E	Y
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Sequence		R	E	K	F	P	A	W	Q	D	A	D	E	F	R	L	W
Secondary structure
SS confidence
Disorder														?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2e11 chain B Region: 1 - 255 Aligned: 254 Modelled: 255 Confidence: 100.0% Identity: 48% PDB header:hydrolase Chain: B: PDB Molecule:hydrolase; PDBTitle: the crystal structure of xc1258 from xanthomonas campestris: a cn-2 hydrolase superfamily protein with an arsenic adduct in the active3 site Phyre2 PDB 2vhi chain G Region: 1 - 251 Aligned: 251 Modelled: 251 Confidence: 100.0% Identity: 18% PDB header:hydrolase Chain: G: PDB Molecule:cg3027-pa; PDBTitle: crystal structure of a pyrimidine degrading enzyme from2 drosophila melanogaster Phyre2 PDB 1ems chain B Region: 1 - 256 Aligned: 254 Modelled: 256 Confidence: 100.0% Identity: 26% PDB header:antitumor protein Chain: B: PDB Molecule:nit-fragile histidine triad fusion protein; PDBTitle: crystal structure of the c. elegans nitfhit protein Phyre2 PDB 2plq chain A Region: 2 - 249 Aligned: 245 Modelled: 245 Confidence: 100.0% Identity: 20% PDB header:hydrolase Chain: A: PDB Molecule:aliphatic amidase; PDBTitle: crystal structure of the amidase from geobacillus pallidus rapc8 Phyre2 PDB 2e2k chain C Region: 4 - 254 Aligned: 247 Modelled: 251 Confidence: 100.0% Identity: 15% PDB header:hydrolase Chain: C: PDB Molecule:formamidase; PDBTitle: helicobacter pylori formamidase amif contains a fine-tuned cysteine-2 glutamate-lysine catalytic triad Phyre2 PDB 2w1v chain A Region: 1 - 252 Aligned: 250 Modelled: 252 Confidence: 100.0% Identity: 22% PDB header:hydrolase Chain: A: PDB Molecule:nitrilase homolog 2; PDBTitle: crystal structure of mouse nitrilase-2 at 1.4a resolution Phyre2 PDB 1ems chain A domain 2 Region: 1 - 250 Aligned: 248 Modelled: 250 Confidence: 100.0% Identity: 25% Fold: Carbon-nitrogen hydrolase Superfamily: Carbon-nitrogen hydrolase Family: Nitrilase Phyre2 PDB 1uf5 chain A Region: 2 - 256 Aligned: 254 Modelled: 255 Confidence: 100.0% Identity: 23% Fold: Carbon-nitrogen hydrolase Superfamily: Carbon-nitrogen hydrolase Family: Carbamilase Phyre2 PDB 1f89 chain A Region: 1 - 251 Aligned: 247 Modelled: 251 Confidence: 100.0% Identity: 23% Fold: Carbon-nitrogen hydrolase Superfamily: Carbon-nitrogen hydrolase Family: Nitrilase Phyre2 PDB 3dla chain D Region: 4 - 251 Aligned: 248 Modelled: 248 Confidence: 100.0% Identity: 17% PDB header:ligase Chain: D: PDB Molecule:glutamine-dependent nad(+) synthetase; PDBTitle: x-ray crystal structure of glutamine-dependent nad+ synthetase from2 mycobacterium tuberculosis bound to naad+ and don Phyre2 PDB 1j31 chain A Region: 3 - 252 Aligned: 245 Modelled: 249 Confidence: 100.0% Identity: 22% Fold: Carbon-nitrogen hydrolase Superfamily: Carbon-nitrogen hydrolase Family: Carbamilase Phyre2 PDB 3hkx chain A Region: 1 - 243 Aligned: 241 Modelled: 243 Confidence: 100.0% Identity: 23% PDB header:hydrolase Chain: A: PDB Molecule:amidase; PDBTitle: crystal structure analysis of an amidase from nesterenkonia sp. Phyre2 PDB 3n05 chain B Region: 1 - 234 Aligned: 232 Modelled: 233 Confidence: 100.0% Identity: 21% PDB header:ligase Chain: B: PDB Molecule:nh(3)-dependent nad(+) synthetase; PDBTitle: crystal structure of nh3-dependent nad+ synthetase from streptomyces2 avermitilis Phyre2 PDB 3ilv chain A Region: 2 - 248 Aligned: 239 Modelled: 247 Confidence: 100.0% Identity: 18% PDB header:ligase Chain: A: PDB Molecule:glutamine-dependent nad(+) synthetase; PDBTitle: crystal structure of a glutamine-dependent nad(+) synthetase2 from cytophaga hutchinsonii Phyre2 PDB 1o60 chain A Region: 15 - 86 Aligned: 72 Modelled: 72 Confidence: 82.6% Identity: 4% Fold: TIM beta/alpha-barrel Superfamily: Aldolase Family: Class I DAHP synthetase Phyre2 PDB 3rqz chain C Region: 2 - 40 Aligned: 33 Modelled: 39 Confidence: 75.1% Identity: 24% PDB header:hydrolase Chain: C: PDB Molecule:metallophosphoesterase; PDBTitle: crystal structure of metallophosphoesterase from sphaerobacter2 thermophilus Phyre2 PDB 1d9e chain A Region: 17 - 86 Aligned: 70 Modelled: 70 Confidence: 70.0% Identity: 7% Fold: TIM beta/alpha-barrel Superfamily: Aldolase Family: Class I DAHP synthetase Phyre2 PDB 3sz8 chain D Region: 17 - 86 Aligned: 70 Modelled: 70 Confidence: 54.8% Identity: 6% PDB header:transferase Chain: D: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase 2; PDBTitle: crystal structure of 2-dehydro-3-deoxyphosphooctonate aldolase from2 burkholderia pseudomallei Phyre2 PDB 2qw5 chain B Region: 18 - 92 Aligned: 75 Modelled: 75 Confidence: 51.1% Identity: 12% PDB header:isomerase Chain: B: PDB Molecule:xylose isomerase-like tim barrel; PDBTitle: crystal structure of a putative sugar phosphate isomerase/epimerase2 (ava4194) from anabaena variabilis atcc 29413 at 1.78 a resolution Phyre2 PDB 3qfn chain A Region: 4 - 40 Aligned: 31 Modelled: 37 Confidence: 38.9% Identity: 35% PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of streptococcal asymmetric ap4a hydrolase and2 phosphodiesterase spr1479/saph in complex with inorganic phosphate Phyre2 1 c2e11B_ 2 c2vhiG_ 3 c1emsB_ 4 c2plqA_ 5 c2e2kC_ 6 c2w1vA_ 7 d1emsa2 8 d1uf5a_ 9 d1f89a_ 10 c3dlaD_ 11 d1j31a_ 12 c3hkxA_ 13 c3n05B_ 14 c3ilvA_ 15 d1o60a_ 16 c3rqzC_ 17 d1d9ea_ 18 c3sz8D_ 19 c2qw5B_ 20 c3qfnA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2e11B_ 100.0 48 PDB header:hydrolase Chain: B: PDB Molecule:hydrolase; PDBTitle: the crystal structure of xc1258 from xanthomonas campestris: a cn-2 hydrolase superfamily protein with an arsenic adduct in the active3 site 2 c2vhiG_ 100.0 18 PDB header:hydrolase Chain: G: PDB Molecule:cg3027-pa; PDBTitle: crystal structure of a pyrimidine degrading enzyme from2 drosophila melanogaster 3 c1emsB_ 100.0 26 PDB header:antitumor protein Chain: B: PDB Molecule:nit-fragile histidine triad fusion protein; PDBTitle: crystal structure of the c. elegans nitfhit protein 4 c2plqA_ 100.0 20 PDB header:hydrolase Chain: A: PDB Molecule:aliphatic amidase; PDBTitle: crystal structure of the amidase from geobacillus pallidus rapc8 5 c2e2kC_ 100.0 15 PDB header:hydrolase Chain: C: PDB Molecule:formamidase; PDBTitle: helicobacter pylori formamidase amif contains a fine-tuned cysteine-2 glutamate-lysine catalytic triad 6 c2w1vA_ 100.0 22 PDB header:hydrolase Chain: A: PDB Molecule:nitrilase homolog 2; PDBTitle: crystal structure of mouse nitrilase-2 at 1.4a resolution 7 d1emsa2 100.0 25 Fold:Carbon-nitrogen hydrolase Superfamily:Carbon-nitrogen hydrolase Family:Nitrilase 8 d1uf5a_ 100.0 23 Fold:Carbon-nitrogen hydrolase Superfamily:Carbon-nitrogen hydrolase Family:Carbamilase 9 d1f89a_ 100.0 23 Fold:Carbon-nitrogen hydrolase Superfamily:Carbon-nitrogen hydrolase Family:Nitrilase 10 c3dlaD_ 100.0 17 PDB header:ligase Chain: D: PDB Molecule:glutamine-dependent nad(+) synthetase; PDBTitle: x-ray crystal structure of glutamine-dependent nad+ synthetase from2 mycobacterium tuberculosis bound to naad+ and don 11 d1j31a_ 100.0 22 Fold:Carbon-nitrogen hydrolase Superfamily:Carbon-nitrogen hydrolase Family:Carbamilase 12 c3hkxA_ 100.0 23 PDB header:hydrolase Chain: A: PDB Molecule:amidase; PDBTitle: crystal structure analysis of an amidase from nesterenkonia sp. 13 c3n05B_ 100.0 21 PDB header:ligase Chain: B: PDB Molecule:nh(3)-dependent nad(+) synthetase; PDBTitle: crystal structure of nh3-dependent nad+ synthetase from streptomyces2 avermitilis 14 c3ilvA_ 100.0 18 PDB header:ligase Chain: A: PDB Molecule:glutamine-dependent nad(+) synthetase; PDBTitle: crystal structure of a glutamine-dependent nad(+) synthetase2 from cytophaga hutchinsonii 15 d1o60a_ 82.6 4 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I DAHP synthetase 16 c3rqzC_ 75.1 24 PDB header:hydrolase Chain: C: PDB Molecule:metallophosphoesterase; PDBTitle: crystal structure of metallophosphoesterase from sphaerobacter2 thermophilus 17 d1d9ea_ 70.0 7 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I DAHP synthetase 18 c3sz8D_ 54.8 6 PDB header:transferase Chain: D: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase 2; PDBTitle: crystal structure of 2-dehydro-3-deoxyphosphooctonate aldolase from2 burkholderia pseudomallei 19 c2qw5B_ 51.1 12 PDB header:isomerase Chain: B: PDB Molecule:xylose isomerase-like tim barrel; PDBTitle: crystal structure of a putative sugar phosphate isomerase/epimerase2 (ava4194) from anabaena variabilis atcc 29413 at 1.78 a resolution 20 c3qfnA_ 38.9 35 PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of streptococcal asymmetric ap4a hydrolase and2 phosphodiesterase spr1479/saph in complex with inorganic phosphate 21 c3stgA_ not modelled 36.9 8 PDB header:transferase Chain: A: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase; PDBTitle: crystal structure of a58p, del(n59), and loop 7 truncated mutant of 3-2 deoxy-d-manno-octulosonate 8-phosphate synthase (kdo8ps) from3 neisseria meningitidis 22 c1s3mA_ not modelled 36.9 16 PDB header:phosphodiesterase Chain: A: PDB Molecule:hypothetical protein mj0936; PDBTitle: structural and functional characterization of a novel2 archaeal phosphodiesterase 23 d1s3la_ not modelled 36.9 16 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:YfcE-like 24 d3c9ua1 not modelled 31.5 9 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 25 d1uf3a_ not modelled 31.0 23 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:TT1561-like 26 c2o14A_ not modelled 30.2 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yxim; PDBTitle: x-ray crystal structure of protein yxim_bacsu from bacillus2 subtilis. northeast structural genomics consortium target3 sr595 27 c2ei9A_ not modelled 29.5 17 PDB header:gene regulation Chain: A: PDB Molecule:non-ltr retrotransposon r1bmks orf2 protein; PDBTitle: crystal structure of r1bm endonuclease domain 28 d1q7ra_ not modelled 28.6 14 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 29 c1su1A_ not modelled 24.8 26 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yfce; PDBTitle: structural and biochemical characterization of yfce, a2 phosphoesterase from e. coli 30 d1su1a_ not modelled 24.8 26 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:YfcE-like 31 d1gpma2 not modelled 24.4 12 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 32 d1wdua_ not modelled 23.2 7 Fold:DNase I-like Superfamily:DNase I-like Family:DNase I-like 33 c2fu3A_ not modelled 19.7 13 PDB header:biosynthetic protein/structural protein Chain: A: PDB Molecule:gephyrin; PDBTitle: crystal structure of gephyrin e-domain 34 d1yx1a1 not modelled 17.7 8 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:KguE-like 35 c1wu8B_ not modelled 16.8 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein ph0463; PDBTitle: crystal structure of project ph0463 from pyrococcus horikoshii ot3 36 d3ck2a1 not modelled 15.4 9 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:YfcE-like 37 c3pzvB_ not modelled 15.2 8 PDB header:hydrolase Chain: B: PDB Molecule:endoglucanase; PDBTitle: c2 crystal form of the endo-1,4-beta-glucanase from bacillus subtilis2 168 38 d1hd7a_ not modelled 15.1 7 Fold:DNase I-like Superfamily:DNase I-like Family:DNase I-like 39 c3ju2A_ not modelled 14.8 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein smc04130; PDBTitle: crystal structure of protein smc04130 from sinorhizobium meliloti 1021 40 d1ydga_ not modelled 13.8 14 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 41 c3o3cD_ not modelled 13.4 9 PDB header:transferase Chain: D: PDB Molecule:glycogen [starch] synthase isoform 2; PDBTitle: glycogen synthase basal state udp complex 42 d4pgaa_ not modelled 13.0 11 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 43 d1vyba_ not modelled 12.6 14 Fold:DNase I-like Superfamily:DNase I-like Family:DNase I-like 44 d1oi7a1 not modelled 11.9 11 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 45 d1i60a_ not modelled 11.4 20 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:IolI-like 46 d2abwa1 not modelled 11.2 21 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 47 d1clib1 not modelled 11.1 13 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 48 c2q8uA_ not modelled 10.5 16 PDB header:hydrolase Chain: A: PDB Molecule:exonuclease, putative; PDBTitle: crystal structure of mre11 from thermotoga maritima msb8 (tm1635) at2 2.20 a resolution 49 c2issF_ not modelled 10.4 16 PDB header:lyase, transferase Chain: F: PDB Molecule:glutamine amidotransferase subunit pdxt; PDBTitle: structure of the plp synthase holoenzyme from thermotoga maritima 50 d2q02a1 not modelled 10.3 10 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:IolI-like 51 d1z7da1 not modelled 10.2 22 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 52 d1sffa_ not modelled 10.0 15 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 53 c3ngoA_ not modelled 9.9 20 PDB header:hydrolase/dna Chain: A: PDB Molecule:ccr4-not transcription complex subunit 6-like; PDBTitle: crystal structure of the human cnot6l nuclease domain in complex with2 poly(a) dna 54 d1xi3a_ not modelled 9.7 14 Fold:TIM beta/alpha-barrel Superfamily:Thiamin phosphate synthase Family:Thiamin phosphate synthase 55 c3tebA_ not modelled 9.4 10 PDB header:hydrolase Chain: A: PDB Molecule:endonuclease/exonuclease/phosphatase; PDBTitle: endonuclease/exonuclease/phosphatase family protein from leptotrichia2 buccalis c-1013-b 56 d1jfla1 not modelled 9.4 18 Fold:ATC-like Superfamily:Aspartate/glutamate racemase Family:Aspartate/glutamate racemase 57 c3qxbB_ not modelled 8.1 9 PDB header:isomerase Chain: B: PDB Molecule:putative xylose isomerase; PDBTitle: crystal structure of a putative xylose isomerase (yp_426450.1) from2 rhodospirillum rubrum atcc 11170 at 1.90 a resolution 58 c3n0lA_ not modelled 8.0 13 PDB header:transferase Chain: A: PDB Molecule:serine hydroxymethyltransferase; PDBTitle: crystal structure of serine hydroxymethyltransferase from2 campylobacter jejuni 59 d2imqx1 not modelled 7.8 20 Fold:DNase I-like Superfamily:DNase I-like Family:Inositol polyphosphate 5-phosphatase (IPP5) 60 d1nlfa_ not modelled 7.6 25 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 61 c3bgwD_ not modelled 7.6 5 PDB header:replication Chain: D: PDB Molecule:dnab-like replicative helicase; PDBTitle: the structure of a dnab-like replicative helicase and its interactions2 with primase 62 c2ou4C_ not modelled 7.5 16 PDB header:isomerase Chain: C: PDB Molecule:d-tagatose 3-epimerase; PDBTitle: crystal structure of d-tagatose 3-epimerase from2 pseudomonas cichorii 63 c3nb0A_ not modelled 7.4 10 PDB header:transferase Chain: A: PDB Molecule:glycogen [starch] synthase isoform 2; PDBTitle: glucose-6-phosphate activated form of yeast glycogen synthase 64 d2zoda1 not modelled 7.3 6 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 65 d1f06a1 not modelled 7.3 11 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 66 c3t9aA_ not modelled 7.1 11 PDB header:transferase Chain: A: PDB Molecule:inositol pyrophosphate kinase; PDBTitle: crystal structure of the catalytic domain of human diphosphoinositol2 pentakisphosphate kinase 2 (ppip5k2) in complex with amppnp at ph 7.0 67 c2zsmA_ not modelled 7.1 16 PDB header:isomerase Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase; PDBTitle: crystal structure of glutamate-1-semialdehyde 2,1-2 aminomutase from aeropyrum pernix, hexagonal form 68 c1chmA_ not modelled 7.1 15 PDB header:creatinase Chain: A: PDB Molecule:creatine amidinohydrolase; PDBTitle: enzymatic mechanism of creatine amidinohydrolase as deduced2 from crystal structures 69 c3pnxF_ not modelled 7.0 14 PDB header:transferase Chain: F: PDB Molecule:putative sulfurtransferase dsre; PDBTitle: crystal structure of a putative sulfurtransferase dsre (swol_2425)2 from syntrophomonas wolfei str. goettingen at 1.92 a resolution 70 c3bh0A_ not modelled 6.8 5 PDB header:replication Chain: A: PDB Molecule:dnab-like replicative helicase; PDBTitle: atpase domain of g40p 71 c3iacA_ not modelled 6.5 12 PDB header:isomerase Chain: A: PDB Molecule:glucuronate isomerase; PDBTitle: 2.2 angstrom crystal structure of glucuronate isomerase from2 salmonella typhimurium. 72 d2z1ea1 not modelled 6.4 11 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 73 c2rb9D_ not modelled 6.3 18 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hype protein; PDBTitle: crystal structure of e.coli hype 74 c2wltA_ not modelled 6.2 10 PDB header:hydrolase Chain: A: PDB Molecule:l-asparaginase; PDBTitle: the crystal structure of helicobacter pylori l-asparaginase2 at 1.4 a resolution 75 c1e9nB_ not modelled 6.2 7 PDB header:dna repair Chain: B: PDB Molecule:dna-(apurinic or apyrimidinic site) lyase; PDBTitle: a second divalent metal ion in the active site of a new2 crystal form of human apurinic/apyrimidinic endonuclease,3 ape1, and its implications for the catalytic mechanism 76 d2zaua1 not modelled 6.2 8 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 77 c2exuA_ not modelled 6.0 18 PDB header:transcription Chain: A: PDB Molecule:transcription initiation protein spt4/spt5; PDBTitle: crystal structure of saccharomyces cerevisiae transcription elongation2 factors spt4-spt5ngn domain 78 c1vqvB_ not modelled 6.0 11 PDB header:transferase Chain: B: PDB Molecule:thiamine monophosphate kinase; PDBTitle: crystal structure of thiamine monophosphate kinase (thil)2 from aquifex aeolicus 79 d1muwa_ not modelled 6.0 14 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Xylose isomerase 80 c2j63B_ not modelled 5.9 17 PDB header:lyase Chain: B: PDB Molecule:ap-endonuclease; PDBTitle: crystal structure of ap endonuclease lmap from leishmania2 major 81 c3dx5A_ not modelled 5.7 6 PDB header:lyase Chain: A: PDB Molecule:uncharacterized protein asbf; PDBTitle: crystal structure of the probable 3-dhs dehydratase asbf involved in2 the petrobactin synthesis from bacillus anthracis 82 c3gfgB_ not modelled 5.4 22 PDB header:oxidoreductase Chain: B: PDB Molecule:uncharacterized oxidoreductase yvaa; PDBTitle: structure of putative oxidoreductase yvaa from bacillus subtilis in2 triclinic form 83 c1ezaA_ not modelled 5.4 9 PDB header:phosphotransferase Chain: A: PDB Molecule:enzyme i; PDBTitle: amino terminal domain of enzyme i from escherichia coli nmr,2 restrained regularized mean structure 84 c3cwcB_ not modelled 5.3 14 PDB header:transferase Chain: B: PDB Molecule:putative glycerate kinase 2; PDBTitle: crystal structure of putative glycerate kinase 2 from salmonella2 typhimurium lt2 85 c3tr9A_ not modelled 5.1 14 PDB header:transferase Chain: A: PDB Molecule:dihydropteroate synthase; PDBTitle: structure of a dihydropteroate synthase (folp) in complex with pteroic2 acid from coxiella burnetii 86 d1prxa_ not modelled 5.1 8 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0