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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c1e9nB_

Fold library idPDB HeaderMoleculeTitle
c1e9nB_PDB header: dna repairChain: B: PDB Molecule: dna-(apurinic or apyrimidinic site) lyase;PDBTitle: a second divalent metal ion in the active site of a new2 crystal form of human apurinic/apyrimidinic endonuclease,3 ape1, and its implications for the catalytic mechanism


Added to library: Tue Mar 16 12:43:16 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence ALYEDPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELP
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Known secondary structure (DSSP)









B
TTS
B


SSTT

S




SSS

GGGTT
T
 .........80.........90.........100.........110.........120.........130.........140
Sequence GLSHQYWSAPSEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEY
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Known secondary structure (DSSP) T






S

SS

SS
S
GGGSSS


SS





GGGTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence RQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFR
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Known secondary structure (DSSP) S

S


SGGGBS
SGGGTTSTTS
TT
 .........220.........230.........240.........250.........260.........270....
Sequence HLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL
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Known secondary structure (DSSP)
TT

S

S
TGGGTTTTT



GGGGGG
TT

SSSB




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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