Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	A	K	A	I	L	L	A	S	V	L	L	V	G	C	Q	S	T	G	N	V	Q	Q	H	A	Q	S	L	S	A	A	G	Q	G	E	A	A	K	F	T	S	Q	A	R	W	M	D	D	G	T	S	I	A	P	D	G	D	L	W
Secondary structure
SS confidence
Disorder		?	?	?												?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	F	I	G	D	E	L	K	M	G	I	P	E	N	D	R	I	R	E	Q	K	Q	K	Y	L	R	N	K	S	Y	L	H	D	V	T	L	R	A	E	P	Y	M	Y	W	I	A	G	Q	V	K	K	R	N	M	P	M	E	L	V	L
Secondary structure
SS confidence
Disorder											?		?																?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	P	I	V	E	S	A	F	D	P	H	A	T	S	G	A	N	A	A	G	I	W	Q	I	I	P	S	T	G	R	N	Y	G	L	K	Q	T	R	N	Y	D	A	R	R	D	V	V	A	S	T	T	A	A	L	N	M	M	Q	R	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		N	K	M	F	D	G	D	W	L	L	T	V	A	A	Y	N	S	G	E	G	R	V	M	K	A	I	K	T	N	K	A	R	G	K	S	T	D	F	W	S	L	P	L	P	Q	E	T	K	Q	Y	V	P	K	M	L	A	L	S	D	I
Secondary structure
SS confidence
Disorder																													?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		L	K	N	S	K	R	Y	G	V	R	L	P	T	T	D	E	S	R	A	L	A	R	V	H	L	S	S	P	V	E	M	A	K	V	A	D	M	A	G	I	S	V	S	K	L	K	T	F	N	A	G	V	K	G	S	T	L	G	A	S
Secondary structure
SS confidence
Disorder								?	?						?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		G	P	Q	Y	V	M	V	P	K	K	H	A	D	Q	L	R	E	S	L	A	S	G	E	I	A	A	V	Q	S	T	L	V	A	D	N	T	P	L	N	S	R	V	Y	T	V	R	S	G	D	T	L	S	S	I	A	S	R	L	G	V
Secondary structure
SS confidence
Disorder												?	?						?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		S	T	K	D	L	Q	Q	W	N	K	L	R	G	S	K	L	K	P	G	Q	S	L	T	I	G	A	G	S	S	A	Q	R	L	A	N	N	S	D	S	I	T	Y	R	V	R	K	G	D	S	L	S	S	I	A	K	R	H	G	V	N
Secondary structure
SS confidence
Disorder												?	?	?	?	?	?	?	?	?	?				?	?		?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
Sequence		I	K	D	V	M	R	W	N	S	D	T	A	N	L	Q	P	G	D	K	L	T	L	F	V	K	N	N	N	M	P	D	S
Secondary structure
SS confidence
Disorder											?	?	?	?	?		?									?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1sly chain A Region: 100 - 242 Aligned: 142 Modelled: 143 Confidence: 100.0% Identity: 22% PDB header:glycosyltransferase Chain: A: PDB Molecule:70-kda soluble lytic transglycosylase; PDBTitle: complex of the 70-kda soluble lytic transglycosylase with2 bulgecin a Phyre2 PDB 2y8p chain A Region: 84 - 243 Aligned: 160 Modelled: 160 Confidence: 100.0% Identity: 18% PDB header:lyase Chain: A: PDB Molecule:endo-type membrane-bound lytic murein transglycosylase a; PDBTitle: crystal structure of an outer membrane-anchored endolytic2 peptidoglycan lytic transglycosylase (mlte) from3 escherichia coli Phyre2 PDB 1qsa chain A domain 2 Region: 100 - 243 Aligned: 144 Modelled: 144 Confidence: 100.0% Identity: 22% Fold: Lysozyme-like Superfamily: Lysozyme-like Family: Bacterial muramidase, catalytic domain Phyre2 PDB 1gbs chain A Region: 92 - 243 Aligned: 130 Modelled: 143 Confidence: 99.9% Identity: 19% Fold: Lysozyme-like Superfamily: Lysozyme-like Family: G-type lysozyme Phyre2 PDB 3mgw chain A Region: 95 - 249 Aligned: 130 Modelled: 146 Confidence: 99.9% Identity: 19% PDB header:hydrolase Chain: A: PDB Molecule:lysozyme g; PDBTitle: thermodynamics and structure of a salmon cold-active goose-type2 lysozyme Phyre2 PDB 3gxk chain B Region: 95 - 243 Aligned: 131 Modelled: 136 Confidence: 99.9% Identity: 24% PDB header:hydrolase Chain: B: PDB Molecule:goose-type lysozyme 1; PDBTitle: the crystal structure of g-type lysozyme from atlantic cod2 (gadus morhua l.) in complex with nag oligomers sheds new3 light on substrate binding and the catalytic mechanism.4 native structure to 1.9 Phyre2 PDB 2l9y chain A Region: 333 - 433 Aligned: 101 Modelled: 101 Confidence: 99.5% Identity: 21% PDB header:sugar binding protein Chain: A: PDB Molecule:cvnh-lysm lectin; PDBTitle: solution structure of the mocvnh-lysm module from the rice blast2 fungus magnaporthe oryzae protein (mgg_03307) Phyre2 PDB 1e0g chain A Region: 398 - 445 Aligned: 48 Modelled: 48 Confidence: 99.4% Identity: 100% Fold: LysM domain Superfamily: LysM domain Family: LysM domain Phyre2 PDB 2djp chain A Region: 387 - 450 Aligned: 64 Modelled: 64 Confidence: 99.2% Identity: 17% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein sb145; PDBTitle: the solution structure of the lysm domain of human2 hypothetical protein sb145 Phyre2 PDB 1y7m chain A domain 2 Region: 400 - 444 Aligned: 45 Modelled: 45 Confidence: 99.2% Identity: 27% Fold: LysM domain Superfamily: LysM domain Family: LysM domain Phyre2 PDB 3bkh chain A Region: 103 - 207 Aligned: 105 Modelled: 105 Confidence: 98.6% Identity: 20% PDB header:hydrolase Chain: A: PDB Molecule:lytic transglycosylase; PDBTitle: crystal structure of the bacteriophage phikz lytic2 transglycosylase, gp144 Phyre2 PDB 1qus chain A Region: 87 - 179 Aligned: 93 Modelled: 93 Confidence: 98.6% Identity: 22% Fold: Lysozyme-like Superfamily: Lysozyme-like Family: Bacterial muramidase, catalytic domain Phyre2 PDB 2gu1 chain A Region: 341 - 428 Aligned: 88 Modelled: 88 Confidence: 98.5% Identity: 28% PDB header:hydrolase Chain: A: PDB Molecule:zinc peptidase; PDBTitle: crystal structure of a zinc containing peptidase from2 vibrio cholerae Phyre2 PDB 1y7m chain B Region: 342 - 385 Aligned: 44 Modelled: 44 Confidence: 98.2% Identity: 43% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein bsu14040; PDBTitle: crystal structure of the b. subtilis ykud protein at 2 a2 resolution Phyre2 PDB 1xsf chain A Region: 116 - 179 Aligned: 64 Modelled: 64 Confidence: 96.8% Identity: 13% PDB header:cell cycle, hydrolase Chain: A: PDB Molecule:probable resuscitation-promoting factor rpfb; PDBTitle: solution structure of a resuscitation promoting factor2 domain from mycobacterium tuberculosis Phyre2 PDB 1xsf chain A domain 1 Region: 116 - 179 Aligned: 64 Modelled: 64 Confidence: 96.5% Identity: 13% Fold: Lysozyme-like Superfamily: Lysozyme-like Family: RPF-like Phyre2 PDB 2fbd chain B Region: 105 - 144 Aligned: 40 Modelled: 40 Confidence: 95.3% Identity: 25% PDB header:hydrolase Chain: B: PDB Molecule:lysozyme 1; PDBTitle: the crystallographic structure of the digestive lysozyme 1 from musca2 domestica at 1.90 ang. Phyre2 PDB 3eo5 chain A Region: 118 - 179 Aligned: 62 Modelled: 62 Confidence: 95.3% Identity: 13% PDB header:cell adhesion Chain: A: PDB Molecule:resuscitation-promoting factor rpfb; PDBTitle: crystal structure of the resuscitation promoting factor rpfb Phyre2 PDB 1iiz chain A Region: 105 - 144 Aligned: 40 Modelled: 40 Confidence: 94.9% Identity: 25% Fold: Lysozyme-like Superfamily: Lysozyme-like Family: C-type lysozyme Phyre2 PDB 1gd6 chain A Region: 105 - 144 Aligned: 40 Modelled: 40 Confidence: 94.6% Identity: 28% Fold: Lysozyme-like Superfamily: Lysozyme-like Family: C-type lysozyme Phyre2 1 c1slyA_ 2 c2y8pA_ 3 d1qsaa2 4 d1gbsa_ 5 c3mgwA_ 6 c3gxkB_ 7 c2l9yA_ 8 d1e0ga_ 9 c2djpA_ 10 d1y7ma2 11 c3bkhA_ 12 d1qusa_ 13 c2gu1A_ 14 c1y7mB_ 15 c1xsfA_ 16 d1xsfa1 17 c2fbdB_ 18 c3eo5A_ 19 d1iiza_ 20 d1gd6a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1slyA_ 100.0 22 PDB header:glycosyltransferase Chain: A: PDB Molecule:70-kda soluble lytic transglycosylase; PDBTitle: complex of the 70-kda soluble lytic transglycosylase with2 bulgecin a 2 c2y8pA_ 100.0 18 PDB header:lyase Chain: A: PDB Molecule:endo-type membrane-bound lytic murein transglycosylase a; PDBTitle: crystal structure of an outer membrane-anchored endolytic2 peptidoglycan lytic transglycosylase (mlte) from3 escherichia coli 3 d1qsaa2 100.0 22 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:Bacterial muramidase, catalytic domain 4 d1gbsa_ 99.9 19 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:G-type lysozyme 5 c3mgwA_ 99.9 19 PDB header:hydrolase Chain: A: PDB Molecule:lysozyme g; PDBTitle: thermodynamics and structure of a salmon cold-active goose-type2 lysozyme 6 c3gxkB_ 99.9 24 PDB header:hydrolase Chain: B: PDB Molecule:goose-type lysozyme 1; PDBTitle: the crystal structure of g-type lysozyme from atlantic cod2 (gadus morhua l.) in complex with nag oligomers sheds new3 light on substrate binding and the catalytic mechanism.4 native structure to 1.9 7 c2l9yA_ 99.5 21 PDB header:sugar binding protein Chain: A: PDB Molecule:cvnh-lysm lectin; PDBTitle: solution structure of the mocvnh-lysm module from the rice blast2 fungus magnaporthe oryzae protein (mgg_03307) 8 d1e0ga_ 99.4 100 Fold:LysM domain Superfamily:LysM domain Family:LysM domain 9 c2djpA_ 99.2 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein sb145; PDBTitle: the solution structure of the lysm domain of human2 hypothetical protein sb145 10 d1y7ma2 99.2 27 Fold:LysM domain Superfamily:LysM domain Family:LysM domain 11 c3bkhA_ 98.6 20 PDB header:hydrolase Chain: A: PDB Molecule:lytic transglycosylase; PDBTitle: crystal structure of the bacteriophage phikz lytic2 transglycosylase, gp144 12 d1qusa_ 98.6 22 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:Bacterial muramidase, catalytic domain 13 c2gu1A_ 98.5 28 PDB header:hydrolase Chain: A: PDB Molecule:zinc peptidase; PDBTitle: crystal structure of a zinc containing peptidase from2 vibrio cholerae 14 c1y7mB_ 98.2 43 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein bsu14040; PDBTitle: crystal structure of the b. subtilis ykud protein at 2 a2 resolution 15 c1xsfA_ 96.8 13 PDB header:cell cycle, hydrolase Chain: A: PDB Molecule:probable resuscitation-promoting factor rpfb; PDBTitle: solution structure of a resuscitation promoting factor2 domain from mycobacterium tuberculosis 16 d1xsfa1 96.5 13 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:RPF-like 17 c2fbdB_ 95.3 25 PDB header:hydrolase Chain: B: PDB Molecule:lysozyme 1; PDBTitle: the crystallographic structure of the digestive lysozyme 1 from musca2 domestica at 1.90 ang. 18 c3eo5A_ 95.3 13 PDB header:cell adhesion Chain: A: PDB Molecule:resuscitation-promoting factor rpfb; PDBTitle: crystal structure of the resuscitation promoting factor rpfb 19 d1iiza_ 94.9 25 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme 20 d1gd6a_ 94.6 28 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme 21 c3ct5A_ not modelled 94.5 16 PDB header:hydrolase Chain: A: PDB Molecule:morphogenesis protein 1; PDBTitle: crystal and cryoem structural studies of a cell wall degrading enzyme2 in the bacteriophage phi29 tail 22 d2vb1a1 not modelled 94.4 33 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme 23 d1hhla_ not modelled 94.3 30 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme 24 d1ghla_ not modelled 94.2 33 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme 25 d1jsea_ not modelled 93.9 35 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme 26 c2goiC_ not modelled 93.6 28 PDB header:cell adhesion, sugar binding protein Chain: C: PDB Molecule:sperm lysozyme-like protein 1; PDBTitle: crystal structure of mouse sperm c-type lysozyme-like2 protein 1 27 c2z2fA_ not modelled 93.5 30 PDB header:hydrolase Chain: A: PDB Molecule:lysozyme c-2; PDBTitle: x-ray crystal structure of bovine stomach lysozyme 28 d1juga_ not modelled 93.2 28 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme 29 d1qqya_ not modelled 93.1 33 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme 30 d1lmqa_ not modelled 92.8 35 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme 31 d1ivma_ not modelled 92.7 33 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme 32 d1lsga1 not modelled 92.2 30 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme 33 d2nwdx1 not modelled 91.8 30 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme 34 d1fkqa_ not modelled 88.1 23 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme 35 d1b9oa_ not modelled 86.5 28 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme 36 d1yroa1 not modelled 85.6 28 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme 37 c2zycA_ not modelled 85.3 11 PDB header:hydrolase Chain: A: PDB Molecule:peptidoglycan hydrolase flgj; PDBTitle: crystal structure of peptidoglycan hydrolase from2 sphingomonas sp. a1 38 d1hfxa_ not modelled 84.9 28 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme 39 d1f6sa_ not modelled 84.1 31 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme 40 c3csqC_ not modelled 83.5 15 PDB header:hydrolase Chain: C: PDB Molecule:morphogenesis protein 1; PDBTitle: crystal and cryoem structural studies of a cell wall2 degrading enzyme in the bacteriophage phi29 tail 41 d2eqla_ not modelled 82.9 28 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme 42 c3fi7A_ not modelled 82.2 17 PDB header:hydrolase Chain: A: PDB Molecule:lmo1076 protein; PDBTitle: crystal structure of the autolysin auto (lmo1076) from listeria2 monocytogenes, catalytic domain 43 d1alca_ not modelled 82.2 28 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme 44 c2kpjA_ not modelled 77.2 26 PDB header:transcription regulator Chain: A: PDB Molecule:sos-response transcriptional repressor, lexa; PDBTitle: solution structure of protein sos-response transcriptional2 repressor, lexa from eubacterium rectale. northeast3 structural genomics consortium target err9a 45 d2icta1 not modelled 71.7 22 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 46 d2jn6a1 not modelled 68.6 38 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Cgl2762-like 47 d2ofya1 not modelled 67.1 19 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 48 c2elhA_ not modelled 65.1 29 PDB header:dna binding protein Chain: A: PDB Molecule:cg11849-pa; PDBTitle: solution structure of the cenp-b n-terminal dna-binding2 domain of fruit fly distal antenna cg11849-pa 49 c2bnoA_ not modelled 62.9 27 PDB header:oxidoreductase Chain: A: PDB Molecule:epoxidase; PDBTitle: the structure of hydroxypropylphosphonic acid epoxidase2 from s. wedmorenis. 50 d1y0pa3 not modelled 62.8 26 Fold:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Superfamily:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Family:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 51 d1r69a_ not modelled 60.4 23 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 52 d1sq8a_ not modelled 57.9 25 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 53 c2lfcA_ not modelled 57.4 26 PDB header:oxidoreductase Chain: A: PDB Molecule:fumarate reductase, flavoprotein subunit; PDBTitle: solution nmr structure of fumarate reductase flavoprotein subunit from2 lactobacillus plantarum, northeast structural genomics consortium3 target lpr145j 54 c3bs3A_ not modelled 57.3 20 PDB header:dna binding protein Chain: A: PDB Molecule:putative dna-binding protein; PDBTitle: crystal structure of a putative dna-binding protein from bacteroides2 fragilis 55 d1b0na2 not modelled 56.7 22 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 56 c2rn7A_ not modelled 53.4 24 PDB header:unknown function Chain: A: PDB Molecule:is629 orfa; PDBTitle: nmr solution structure of tnpe protein from shigella2 flexneri. northeast structural genomics target sfr125 57 d1d4ca3 not modelled 53.1 22 Fold:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Superfamily:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Family:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 58 c3t76A_ not modelled 52.8 18 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator vanug; PDBTitle: crystal structure of transcriptional regulator vanug, form ii 59 c3cecA_ not modelled 51.9 18 PDB header:transcription Chain: A: PDB Molecule:putative antidote protein of plasmid maintenance system; PDBTitle: crystal structure of a putative antidote protein of plasmid2 maintenance system (npun_f2943) from nostoc punctiforme pcc 73102 at3 1.60 a resolution 60 c1rr7A_ not modelled 50.6 29 PDB header:transcription Chain: A: PDB Molecule:middle operon regulator; PDBTitle: crystal structure of the middle operon regulator protein of2 bacteriophage mu 61 d1rr7a_ not modelled 50.6 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Middle operon regulator, Mor 62 d2croa_ not modelled 50.6 16 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 63 c1y9qA_ not modelled 48.3 22 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, hth_3 family; PDBTitle: crystal structure of hth_3 family transcriptional regulator2 from vibrio cholerae 64 c3b7hA_ not modelled 48.0 14 PDB header:structural protein Chain: A: PDB Molecule:prophage lp1 protein 11; PDBTitle: crystal structure of the prophage lp1 protein 11 65 d1k78a1 not modelled 46.9 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Paired domain 66 d6paxa1 not modelled 45.8 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Paired domain 67 d1y7ya1 not modelled 44.7 10 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 68 c2k53A_ not modelled 44.2 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:a3dk08 protein; PDBTitle: nmr solution structure of a3dk08 protein from clostridium2 thermocellum: northeast structural genomics consortium3 target cmr9 69 c3op9A_ not modelled 41.5 19 PDB header:transcription regulator Chain: A: PDB Molecule:pli0006 protein; PDBTitle: crystal structure of transcriptional regulator from listeria innocua 70 d1bw6a_ not modelled 40.7 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Centromere-binding 71 d1y9qa1 not modelled 37.8 23 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Probable transcriptional regulator VC1968, N-terminal domain 72 d1utxa_ not modelled 37.5 22 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 73 d1qo8a3 not modelled 37.3 30 Fold:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Superfamily:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Family:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 74 c2bkiA_ not modelled 35.9 16 PDB header:motor protein/metal-binding protein Chain: A: PDB Molecule:unconventional myosin; PDBTitle: myosin vi nucleotide-free (mdinsert2-iq) crystal structure 75 c3ivpD_ not modelled 34.5 13 PDB header:dna binding protein Chain: D: PDB Molecule:putative transposon-related dna-binding protein; PDBTitle: the structure of a possible transposon-related dna-binding protein2 from clostridium difficile 630. 76 c3omtA_ not modelled 34.3 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: putative antitoxin component, chu_2935 protein, from xre family from2 prevotella buccae. 77 c1b0nA_ not modelled 34.1 24 PDB header:transcription regulator Chain: A: PDB Molecule:protein (sinr protein); PDBTitle: sinr protein/sini protein complex 78 c3mlfC_ not modelled 33.6 24 PDB header:transcription regulator Chain: C: PDB Molecule:transcriptional regulator; PDBTitle: putative transcriptional regulator from staphylococcus aureus. 79 c2z99A_ not modelled 30.2 18 PDB header:cell cycle Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of scpb from mycobacterium tuberculosis 80 c3kxaD_ not modelled 29.3 21 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of ngo0477 from neisseria gonorrhoeae 81 c2ewtA_ not modelled 28.8 24 PDB header:dna binding protein Chain: A: PDB Molecule:putative dna-binding protein; PDBTitle: crystal structure of the dna-binding domain of bldd 82 d1adra_ not modelled 28.4 16 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 83 d1hlva1 not modelled 27.5 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Centromere-binding 84 c2b39B_ not modelled 27.3 18 PDB header:immune system Chain: B: PDB Molecule:c3; PDBTitle: structure of mammalian c3 with an intact thioester at 3a resolution 85 d1pdnc_ not modelled 26.8 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Paired domain 86 c2k5eA_ not modelled 25.7 38 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of putative uncharacterized protein2 gsu1278 from methanocaldococcus jannaschii, northeast3 structural genomics consortium (nesg) target gsr195 87 c3qaoA_ not modelled 25.6 28 PDB header:transcription regulator Chain: A: PDB Molecule:merr-like transcriptional regulator; PDBTitle: the crystal structure of the n-terminal domain of a merr-like2 transcriptional regulator from listeria monocytogenes egd-e 88 d1nera_ not modelled 25.5 17 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 89 d1a9xa1 not modelled 25.1 18 Fold:Carbamoyl phosphate synthetase, large subunit connection domain Superfamily:Carbamoyl phosphate synthetase, large subunit connection domain Family:Carbamoyl phosphate synthetase, large subunit connection domain 90 c3clcC_ not modelled 24.6 29 PDB header:transcription regulator/dna Chain: C: PDB Molecule:regulatory protein; PDBTitle: crystal structure of the restriction-modification controller protein2 c.esp1396i tetramer in complex with its natural 35 base-pair operator 91 c2gm4B_ not modelled 24.5 22 PDB header:recombination, dna Chain: B: PDB Molecule:transposon gamma-delta resolvase; PDBTitle: an activated, tetrameric gamma-delta resolvase: hin chimaera bound to2 cleaved dna 92 d1d5ya1 not modelled 24.3 33 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:AraC type transcriptional activator 93 c1t6sB_ not modelled 22.0 18 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of a conserved hypothetical protein from chlorobium2 tepidum 94 d1lmb3_ not modelled 21.9 19 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 95 d2phcb1 not modelled 21.8 24 Fold:Cyclophilin-like Superfamily:Cyclophilin-like Family:PH0987 C-terminal domain-like 96 c3f52A_ not modelled 21.2 30 PDB header:transcription activator Chain: A: PDB Molecule:clp gene regulator (clgr); PDBTitle: crystal structure of the clp gene regulator clgr from c. glutamicum 97 d1whza_ not modelled 20.9 11 Fold:dsRBD-like Superfamily:YcfA/nrd intein domain Family:YcfA-like 98 d1mnda2 not modelled 20.9 22 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Motor proteins 99 c3hefB_ not modelled 20.8 38 PDB header:viral protein Chain: B: PDB Molecule:gene 1 protein; PDBTitle: crystal structure of the bacteriophage sf6 terminase small2 subunit 100 d2obpa1 not modelled 20.7 27 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ReutB4095-like 101 c2lcvA_ not modelled 20.6 14 PDB header:transcription regulator Chain: A: PDB Molecule:hth-type transcriptional repressor cytr; PDBTitle: structure of the cytidine repressor dna-binding domain; an alternate2 calculation

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0