Email l.a.kelley@imperial.ac.uk Description P42911 Date Thu Jan 5 12:02:08 GMT 2012 Unique Job ID 1632ff3e6c1753eb

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2dmwA_ 42.3 18 PDB header:membrane protein Chain: A: PDB Molecule:synaptobrevin-like 1 variant; PDBTitle: solution structure of the longin domain of synaptobrevin-2 like protein 1 2 c2jttD_ 19.0 26 PDB header:calcium binding protein/antitumor protei Chain: D: PDB Molecule:calcyclin-binding protein; PDBTitle: solution structure of calcium loaded s100a6 bound to c-2 terminal siah-1 interacting protein 3 d1ljra1 18.2 6 Fold:GST C-terminal domain-like Superfamily:GST C-terminal domain-like Family:Glutathione S-transferase (GST), C-terminal domain 4 c3aqpB_ 17.7 11 PDB header:membrane protein Chain: B: PDB Molecule:probable secdf protein-export membrane protein; PDBTitle: crystal structure of secdf, a translocon-associated membrane protein,2 from thermus thrmophilus 5 c3ctvA_ 16.9 15 PDB header:oxidoreductase Chain: A: PDB Molecule:3-hydroxyacyl-coa dehydrogenase; PDBTitle: crystal structure of central domain of 3-hydroxyacyl-coa2 dehydrogenase from archaeoglobus fulgidus 6 c1l2aD_ 16.6 21 PDB header:hydrolase Chain: D: PDB Molecule:cellobiohydrolase; PDBTitle: the crystal structure and catalytic mechanism of2 cellobiohydrolase cels, the major enzymatic component of3 the clostridium thermocellum cellulosome 7 d1l1ya_ 16.6 21 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Cellulases catalytic domain 8 d1iyxa2 16.2 14 Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like 9 d1t3qa1 13.8 21 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 10 d1g9ga_ 13.4 16 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Cellulases catalytic domain 11 c3bd0D_ 12.9 26 PDB header:peptide binding protein Chain: D: PDB Molecule:protein memo1; PDBTitle: crystal structure of memo, form ii 12 d2i4ra1 12.3 35 Fold:AtpF-like Superfamily:AtpF-like Family:AtpF-like 13 c1x1jA_ 12.2 18 PDB header:lyase Chain: A: PDB Molecule:xanthan lyase; PDBTitle: crystal structure of xanthan lyase (n194a) with a substrate. 14 d1oaia_ 12.1 16 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TAP-C domain-like 15 c3htkB_ 11.5 15 PDB header:recombination/replication/ligase Chain: B: PDB Molecule:structural maintenance of chromosomes protein 5; PDBTitle: crystal structure of mms21 and smc5 complex 16 c1zroB_ 11.2 15 PDB header:cell invasion Chain: B: PDB Molecule:erythrocyte binding antigen region ii; PDBTitle: crystal structure of eba-175 region ii (rii) crystallized2 in the presence of (alpha)2,3-sialyllactose 17 d1v97a1 11.1 19 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 18 d1rm6c1 11.1 21 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 19 d1s29a_ 10.0 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:La domain 20 d1x1ia1 9.5 18 Fold:alpha/alpha toroid Superfamily:Chondroitin AC/alginate lyase Family:Hyaluronate lyase-like catalytic, N-terminal domain 21 c2cfhD_ not modelled 9.5 16 PDB header:transport Chain: D: PDB Molecule:trafficking protein particle complex subunit 6b; PDBTitle: structure of the bet3-tpc6b core of trapp 22 d2cqka1 not modelled 9.4 33 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:La domain 23 d1ffva1 not modelled 9.2 17 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 24 c2j96B_ not modelled 9.1 11 PDB header:photosynthesis Chain: B: PDB Molecule:phycoerythrocyanin alpha chain; PDBTitle: the e-configuration of alfa-phycoerythrocyanin 25 d1j2za_ not modelled 8.9 19 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:UDP N-acetylglucosamine acyltransferase 26 d1k3ra2 not modelled 8.5 35 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:Hypothetical protein MTH1 (MT0001), dimerisation domain 27 d1cb8a1 not modelled 8.4 9 Fold:alpha/alpha toroid Superfamily:Chondroitin AC/alginate lyase Family:Hyaluronate lyase-like catalytic, N-terminal domain 28 c2vh3B_ not modelled 8.4 24 PDB header:unknown function Chain: B: PDB Molecule:ranasmurfin; PDBTitle: ranasmurfin 29 d1w6ta2 not modelled 8.4 14 Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like 30 c3cloC_ not modelled 8.0 10 PDB header:transcription regulator Chain: C: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator containing a2 luxr dna binding domain (np_811094.1) from bacteroides3 thetaiotaomicron vpi-5482 at 2.04 a resolution 31 c2kdtA_ not modelled 7.9 50 PDB header:protein transport Chain: A: PDB Molecule:neuroendocrine convertase 1; PDBTitle: pc1/3 dcsg sorting domain structure in dpc 32 c1cb8A_ not modelled 7.9 5 PDB header:lyase Chain: A: PDB Molecule:protein (chondroitinase ac); PDBTitle: chondroitinase ac lyase from flavobacterium heparinum 33 c2rrfA_ not modelled 7.8 35 PDB header:unknown function Chain: A: PDB Molecule:zinc finger fyve domain-containing protein 21; PDBTitle: the solution structure of the c-terminal region of zinc finger fyve2 domain-containing protein 21 34 d1zxia1 not modelled 7.4 13 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 35 d1n62a1 not modelled 7.3 13 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 36 c1t3qD_ not modelled 7.3 21 PDB header:oxidoreductase Chain: D: PDB Molecule:quinoline 2-oxidoreductase small subunit; PDBTitle: crystal structure of quinoline 2-oxidoreductase from pseudomonas2 putida 86 37 c2jp7A_ not modelled 7.0 21 PDB header:translation Chain: A: PDB Molecule:mrna export factor mex67; PDBTitle: nmr structure of the mex67 uba domain 38 d2j0wa3 not modelled 7.0 0 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 39 d1go5a_ not modelled 7.0 20 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TAP-C domain-like 40 c1q0wA_ not modelled 6.9 30 PDB header:transport protein Chain: A: PDB Molecule:vacuolar protein sorting-associated protein PDBTitle: solution structure of vps27 amino-terminal uim-ubiquitin2 complex 41 c1bm4A_ not modelled 6.8 15 PDB header:viral protein Chain: A: PDB Molecule:protein (moloney murine leukemia virus capsid); PDBTitle: momlv capsid protein major homology region peptide analog 42 c3hrdH_ not modelled 6.8 17 PDB header:oxidoreductase Chain: H: PDB Molecule:nicotinate dehydrogenase small fes subunit; PDBTitle: crystal structure of nicotinate dehydrogenase 43 c1rm6F_ not modelled 6.8 21 PDB header:oxidoreductase Chain: F: PDB Molecule:4-hydroxybenzoyl-coa reductase gamma subunit; PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica 44 d3hdha1 not modelled 6.6 20 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:HCDH C-domain-like 45 c1yx5A_ not modelled 6.5 23 PDB header:hydrolase Chain: A: PDB Molecule:26s proteasome non-atpase regulatory subunit 4; PDBTitle: solution structure of s5a uim-1/ubiquitin complex 46 d1jroa1 not modelled 6.2 19 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 47 c3c9pA_ not modelled 6.0 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein sp1917; PDBTitle: crystal structure of uncharacterized protein sp1917 48 d1f0ya1 not modelled 6.0 23 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:HCDH C-domain-like 49 c3n8bB_ not modelled 6.0 9 PDB header:nucleic acid binding protein Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of borrelia burgdorferi pur-alpha 50 c3snhA_ not modelled 6.0 30 PDB header:endocytosis Chain: A: PDB Molecule:dynamin-1; PDBTitle: crystal structure of nucleotide-free human dynamin1 51 c3zvrA_ not modelled 6.0 30 PDB header:hydrolase Chain: A: PDB Molecule:dynamin-1; PDBTitle: crystal structure of dynamin 52 c3pf6C_ not modelled 5.9 22 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein pp-luz7_gp033; PDBTitle: the structure of uncharacterized protein pp-luz7_gp033 from2 pseudomonas phage luz7. 53 d2h8aa1 not modelled 5.9 9 Fold:MAPEG domain-like Superfamily:MAPEG domain-like Family:MAPEG domain 54 d1r2za1 not modelled 5.8 36 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 55 d1q33a_ not modelled 5.7 8 Fold:Nudix Superfamily:Nudix Family:MutT-like 56 c3fseB_ not modelled 5.6 20 PDB header:hydrolase Chain: B: PDB Molecule:two-domain protein containing dj-1/thij/pfpi-like and PDBTitle: crystal structure of a two-domain protein containing dj-1/thij/pfpi-2 like and ferritin-like domains (ava_4496) from anabaena variabilis3 atcc 29413 at 1.90 a resolution 57 c3nm7D_ not modelled 5.6 9 PDB header:nucleic acid binding protein Chain: D: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of borrelia burgdorferi pur-alpha 58 d1dq3a2 not modelled 5.6 14 Fold:dsRBD-like Superfamily:YcfA/nrd intein domain Family:PI-Pfui intein middle domain 59 d1u7ka_ not modelled 5.6 26 Fold:Retrovirus capsid protein, N-terminal core domain Superfamily:Retrovirus capsid protein, N-terminal core domain Family:Retrovirus capsid protein, N-terminal core domain 60 c3juiA_ not modelled 5.6 14 PDB header:translation Chain: A: PDB Molecule:translation initiation factor eif-2b subunit epsilon; PDBTitle: crystal structure of the c-terminal domain of human translation2 initiation factor eif2b epsilon subunit 61 c1bb1B_ not modelled 5.5 21 PDB header:de novo protein design Chain: B: PDB Molecule:designed, thermostable heterotrimeric coiled PDBTitle: crystal structure of a designed, thermostable2 heterotrimeric coiled coil 62 d1utga_ not modelled 5.5 9 Fold:Uteroglobin-like Superfamily:Uteroglobin-like Family:Uteroglobin-like 63 d1jqna_ not modelled 5.4 20 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate carboxylase 64 d2gena2 not modelled 5.4 15 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 65 d1l2la_ not modelled 5.4 43 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase 66 d1zh5a1 not modelled 5.3 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:La domain 67 d1ee8a1 not modelled 5.3 43 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 68 d1su3a1 not modelled 5.3 26 Fold:PGBD-like Superfamily:PGBD-like Family:MMP N-terminal domain 69 c1ffuA_ not modelled 5.3 17 PDB header:hydrolase Chain: A: PDB Molecule:cuts, iron-sulfur protein of carbon monoxide PDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava which lacks the mo-pyranopterin moiety of the3 molybdenum cofactor 70 c3b9jI_ not modelled 5.2 19 PDB header:oxidoreductase Chain: I: PDB Molecule:xanthine oxidase; PDBTitle: structure of xanthine oxidase with 2-hydroxy-6-methylpurine 71 c2bbjB_ not modelled 5.2 17 PDB header:metal transport/membrane protein Chain: B: PDB Molecule:divalent cation transport-related protein; PDBTitle: crystal structure of the cora mg2+ transporter 72 c1k3rA_ not modelled 5.2 35 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein mt0001; PDBTitle: crystal structure of the methyltransferase with a knot from2 methanobacterium thermoautotrophicum 73 d1hh4e_ not modelled 5.2 28 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:RhoGDI-like 74 d1seda_ not modelled 5.1 12 Fold:Hypothetical protein YhaI Superfamily:Hypothetical protein YhaI Family:Hypothetical protein YhaI