Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	G	N	T	I	G	Q	L	F	R	V	T	T	F	G	E	S	H	G	L	A	L	G	C	I	V	D	G	V	P	P	G	I	P	L	T	E	A	D	L	Q	H	D	L	D	R	R	R	P	G	T	S	R	Y	T	T	Q	R	R
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																																									?	?		?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	P	D	Q	V	K	I	L	S	G	V	F	E	G	V	T	T	G	T	S	I	G	L	L	I	E	N	T	D	Q	R	S	Q	D	Y	S	A	I	K	D	V	F	R	P	G	H	A	D	Y	T	Y	E	Q	K	Y	G	L	R	D	Y
Secondary structure
SS confidence
Disorder																															?		?	?		?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		R	G	G	G	R	S	S	A	R	E	T	A	M	R	V	A	A	G	A	I	A	K	K	Y	L	A	E	K	F	G	I	E	I	R	G	C	L	T	Q	M	G	D	I	P	L	D	I	K	D	W	S	Q	V	E	Q	N	P	F	F	C
Secondary structure
SS confidence
Disorder			?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		P	D	P	D	K	I	D	A	L	D	E	L	M	R	A	L	K	K	E	G	D	S	I	G	A	K	V	T	V	V	A	S	G	V	P	A	G	L	G	E	P	V	F	D	R	L	D	A	D	I	A	H	A	L	M	S	I	N	A	V
Secondary structure
SS confidence
Disorder		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		K	G	V	E	I	G	D	G	F	D	V	V	A	L	R	G	S	Q	N	R	D	E	I	T	K	D	G	F	Q	S	N	H	A	G	G	I	L	G	G	I	S	S	G	Q	Q	I	I	A	H	M	A	L	K	P	T	S	S	I	T	V
Secondary structure
SS confidence
Disorder														?	?	?		?		?	?							?						?			?		?	?																		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		P	G	R	T	I	N	R	F	G	E	E	V	E	M	I	T	K	G	R	H	D	P	C	V	G	I	R	A	V	P	I	A	E	A	M	L	A	I	V	L	M	D	H	L	L	R	Q	R	A	Q	N	A	D	V	K	T	D	I	P	R
Secondary structure
SS confidence
Disorder		?	?	?	?		?	?	?	?			?	?																																				?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.
Sequence		W
Secondary structure
SS confidence
Disorder		?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1um0 chain A Region: 4 - 360 Aligned: 353 Modelled: 357 Confidence: 100.0% Identity: 45% Fold: Chorismate synthase, AroC Superfamily: Chorismate synthase, AroC Family: Chorismate synthase, AroC Phyre2 PDB 1qxo chain A Region: 10 - 360 Aligned: 348 Modelled: 350 Confidence: 100.0% Identity: 38% Fold: Chorismate synthase, AroC Superfamily: Chorismate synthase, AroC Family: Chorismate synthase, AroC Phyre2 PDB 1ztb chain A Region: 9 - 360 Aligned: 346 Modelled: 350 Confidence: 100.0% Identity: 38% PDB header:ligase Chain: A: PDB Molecule:chorismate synthase; PDBTitle: crystal structure of chorismate synthase from mycobacterium2 tuberculosis Phyre2 PDB 1q1l chain A Region: 8 - 360 Aligned: 301 Modelled: 318 Confidence: 100.0% Identity: 41% Fold: Chorismate synthase, AroC Superfamily: Chorismate synthase, AroC Family: Chorismate synthase, AroC Phyre2 PDB 1sq1 chain A Region: 4 - 360 Aligned: 280 Modelled: 296 Confidence: 100.0% Identity: 45% Fold: Chorismate synthase, AroC Superfamily: Chorismate synthase, AroC Family: Chorismate synthase, AroC Phyre2 PDB 1r53 chain A Region: 4 - 351 Aligned: 270 Modelled: 282 Confidence: 100.0% Identity: 51% Fold: Chorismate synthase, AroC Superfamily: Chorismate synthase, AroC Family: Chorismate synthase, AroC Phyre2 PDB 2k1h chain A Region: 227 - 249 Aligned: 23 Modelled: 23 Confidence: 76.4% Identity: 22% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ser13; PDBTitle: solution nmr structure of ser13 from staphylococcus epidermidis.2 northeast structural genomics consortium target ser13 Phyre2 PDB 2ffm chain A domain 1 Region: 227 - 249 Aligned: 23 Modelled: 23 Confidence: 73.0% Identity: 13% Fold: Hypothetical protein SAV1430 Superfamily: Hypothetical protein SAV1430 Family: Hypothetical protein SAV1430 Phyre2 PDB 3r3s chain D Region: 102 - 235 Aligned: 132 Modelled: 134 Confidence: 61.2% Identity: 15% PDB header:oxidoreductase Chain: D: PDB Molecule:oxidoreductase; PDBTitle: structure of the ygha oxidoreductase from salmonella enterica Phyre2 PDB 1o4v chain A Region: 141 - 252 Aligned: 87 Modelled: 90 Confidence: 61.1% Identity: 25% Fold: Flavodoxin-like Superfamily: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Phyre2 PDB 3lp6 chain D Region: 141 - 252 Aligned: 87 Modelled: 90 Confidence: 58.6% Identity: 31% PDB header:lyase Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase catalytic subunit; PDBTitle: crystal structure of rv3275c-e60a from mycobacterium tuberculosis at2 1.7a resolution Phyre2 PDB 1qcz chain A Region: 141 - 252 Aligned: 87 Modelled: 90 Confidence: 54.8% Identity: 21% Fold: Flavodoxin-like Superfamily: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Phyre2 PDB 1m1g chain B Region: 34 - 76 Aligned: 43 Modelled: 43 Confidence: 53.4% Identity: 28% PDB header:transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of aquifex aeolicus n-utilization2 substance g (nusg), space group p2(1) Phyre2 PDB 1xmp chain A Region: 141 - 252 Aligned: 87 Modelled: 90 Confidence: 44.9% Identity: 23% Fold: Flavodoxin-like Superfamily: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Phyre2 PDB 2ekm chain C Region: 10 - 54 Aligned: 45 Modelled: 45 Confidence: 40.6% Identity: 24% PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein st1511; PDBTitle: structure of st1219 protein from sulfolobus tokodaii Phyre2 PDB 1vgg chain A Region: 10 - 52 Aligned: 43 Modelled: 43 Confidence: 39.1% Identity: 23% Fold: Ta1353-like Superfamily: Ta1353-like Family: Ta1353-like Phyre2 PDB 3trh chain I Region: 141 - 252 Aligned: 87 Modelled: 90 Confidence: 35.4% Identity: 24% PDB header:lyase Chain: I: PDB Molecule:phosphoribosylaminoimidazole carboxylase PDBTitle: structure of a phosphoribosylaminoimidazole carboxylase catalytic2 subunit (pure) from coxiella burnetii Phyre2 PDB 2xzn chain F Region: 20 - 67 Aligned: 46 Modelled: 48 Confidence: 35.4% Identity: 13% PDB header:ribosome Chain: F: PDB Molecule:eif1; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 Phyre2 PDB 2lhu chain A Region: 88 - 122 Aligned: 22 Modelled: 22 Confidence: 32.7% Identity: 27% PDB header:structural protein Chain: A: PDB Molecule:mybpc3 protein; PDBTitle: structural insight into the unique cardiac myosin binding protein-c2 motif: a partially folded domain Phyre2 PDB 1ciy chain A domain 1 Region: 237 - 257 Aligned: 21 Modelled: 21 Confidence: 31.1% Identity: 33% Fold: Galactose-binding domain-like Superfamily: Galactose-binding domain-like Family: delta-Endotoxin, C-terminal domain Phyre2 1 d1um0a_ 2 d1qxoa_ 3 c1ztbA_ 4 d1q1la_ 5 d1sq1a_ 6 d1r53a_ 7 c2k1hA_ 8 d2ffma1 9 c3r3sD_ 10 d1o4va_ 11 c3lp6D_ 12 d1qcza_ 13 c1m1gB_ 14 d1xmpa_ 15 c2ekmC_ 16 d1vgga_ 17 c3trhI_ 18 c2xznF_ 19 c2lhuA_ 20 d1ciya1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1um0a_ 100.0 45 Fold:Chorismate synthase, AroC Superfamily:Chorismate synthase, AroC Family:Chorismate synthase, AroC 2 d1qxoa_ 100.0 38 Fold:Chorismate synthase, AroC Superfamily:Chorismate synthase, AroC Family:Chorismate synthase, AroC 3 c1ztbA_ 100.0 38 PDB header:ligase Chain: A: PDB Molecule:chorismate synthase; PDBTitle: crystal structure of chorismate synthase from mycobacterium2 tuberculosis 4 d1q1la_ 100.0 41 Fold:Chorismate synthase, AroC Superfamily:Chorismate synthase, AroC Family:Chorismate synthase, AroC 5 d1sq1a_ 100.0 45 Fold:Chorismate synthase, AroC Superfamily:Chorismate synthase, AroC Family:Chorismate synthase, AroC 6 d1r53a_ 100.0 51 Fold:Chorismate synthase, AroC Superfamily:Chorismate synthase, AroC Family:Chorismate synthase, AroC 7 c2k1hA_ 76.4 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ser13; PDBTitle: solution nmr structure of ser13 from staphylococcus epidermidis.2 northeast structural genomics consortium target ser13 8 d2ffma1 73.0 13 Fold:Hypothetical protein SAV1430 Superfamily:Hypothetical protein SAV1430 Family:Hypothetical protein SAV1430 9 c3r3sD_ 61.2 15 PDB header:oxidoreductase Chain: D: PDB Molecule:oxidoreductase; PDBTitle: structure of the ygha oxidoreductase from salmonella enterica 10 d1o4va_ 61.1 25 Fold:Flavodoxin-like Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) 11 c3lp6D_ 58.6 31 PDB header:lyase Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase catalytic subunit; PDBTitle: crystal structure of rv3275c-e60a from mycobacterium tuberculosis at2 1.7a resolution 12 d1qcza_ 54.8 21 Fold:Flavodoxin-like Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) 13 c1m1gB_ 53.4 28 PDB header:transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of aquifex aeolicus n-utilization2 substance g (nusg), space group p2(1) 14 d1xmpa_ 44.9 23 Fold:Flavodoxin-like Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) 15 c2ekmC_ 40.6 24 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein st1511; PDBTitle: structure of st1219 protein from sulfolobus tokodaii 16 d1vgga_ 39.1 23 Fold:Ta1353-like Superfamily:Ta1353-like Family:Ta1353-like 17 c3trhI_ 35.4 24 PDB header:lyase Chain: I: PDB Molecule:phosphoribosylaminoimidazole carboxylase PDBTitle: structure of a phosphoribosylaminoimidazole carboxylase catalytic2 subunit (pure) from coxiella burnetii 18 c2xznF_ 35.4 13 PDB header:ribosome Chain: F: PDB Molecule:eif1; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 19 c2lhuA_ 32.7 27 PDB header:structural protein Chain: A: PDB Molecule:mybpc3 protein; PDBTitle: structural insight into the unique cardiac myosin binding protein-c2 motif: a partially folded domain 20 d1ciya1 31.1 33 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:delta-Endotoxin, C-terminal domain 21 d1ji6a1 not modelled 29.3 24 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:delta-Endotoxin, C-terminal domain 22 c2d16B_ not modelled 27.9 23 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein ph1918; PDBTitle: crystal structure of ph1918 protein from pyrococcus horikoshii ot3 23 c3orsD_ not modelled 26.5 16 PDB header:isomerase,biosynthetic protein Chain: D: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase; PDBTitle: crystal structure of n5-carboxyaminoimidazole ribonucleotide mutase2 from staphylococcus aureus 24 c3rggD_ not modelled 23.0 14 PDB header:lyase Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase, pure protein; PDBTitle: crystal structure of treponema denticola pure bound to air 25 d1dlca1 not modelled 22.6 29 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:delta-Endotoxin, C-terminal domain 26 d1qlwa_ not modelled 22.6 28 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:A novel bacterial esterase 27 c2ywxA_ not modelled 17.8 28 PDB header:lyase Chain: A: PDB Molecule:phosphoribosylaminoimidazole carboxylase catalytic subunit; PDBTitle: crystal structure of phosphoribosylaminoimidazole carboxylase2 catalytic subunit from methanocaldococcus jannaschii 28 d2za7a1 not modelled 16.0 42 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 29 d1z6om1 not modelled 15.9 32 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 30 c2w3pB_ not modelled 13.9 21 PDB header:lyase Chain: B: PDB Molecule:benzoyl-coa-dihydrodiol lyase; PDBTitle: boxc crystal structure 31 c2ejeA_ not modelled 13.7 50 PDB header:transcription Chain: A: PDB Molecule:general transcription factor ii-i; PDBTitle: solution structure of rsgi ruh-071, a gtf2i domain in human2 cdna 32 c3mcaB_ not modelled 13.1 20 PDB header:translation regulation/hydrolase Chain: B: PDB Molecule:protein dom34; PDBTitle: structure of the dom34-hbs1 complex and implications for its role in2 no-go decay 33 c2dn5A_ not modelled 13.0 42 PDB header:transcription Chain: A: PDB Molecule:general transcription factor ii-i repeat domain- PDBTitle: solution structure of rsgi ruh-057, a gtf2i domain in human2 cdna 34 c2a73B_ not modelled 12.7 16 PDB header:immune system Chain: B: PDB Molecule:complement c3; PDBTitle: human complement component c3 35 c2dzrA_ not modelled 12.3 58 PDB header:transcription Chain: A: PDB Molecule:general transcription factor ii-i repeat domain- PDBTitle: solution structure of rsgi ruh-067, a gtf2i domain in human2 cdna 36 d1q60a_ not modelled 12.1 42 Fold:GTF2I-like repeat Superfamily:GTF2I-like repeat Family:GTF2I-like repeat 37 c2d99A_ not modelled 12.1 33 PDB header:transcription Chain: A: PDB Molecule:general transcription factor ii-i repeat domain- PDBTitle: solution structure of rsgi ruh-048, a gtf2i domain in human2 cdna 38 c1w99A_ not modelled 12.1 24 PDB header:toxin Chain: A: PDB Molecule:pesticidial crystal protein cry4ba; PDBTitle: mosquito-larvicidal toxin cry4ba from bacillus2 thuringiensis ssp. israelensis 39 c3b8hA_ not modelled 11.9 50 PDB header:biosynthetic protein/transferase Chain: A: PDB Molecule:elongation factor 2; PDBTitle: structure of the eef2-exoa(e546a)-nad+ complex 40 c2dn4A_ not modelled 11.7 50 PDB header:transcription Chain: A: PDB Molecule:general transcription factor ii-i; PDBTitle: solution structure of rsgi ruh-060, a gtf2i domain in human2 cdna 41 d1r03a_ not modelled 11.4 43 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 42 d1g9pa_ not modelled 11.3 100 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:omega toxin-like Family:Spider toxins 43 c1g9pA_ not modelled 11.3 100 PDB header:toxin Chain: A: PDB Molecule:omega-atracotoxin-hv2a; PDBTitle: solution structure of the insecticidal calcium channel2 blocker omega-atracotoxin-hv2a 44 c2c9kA_ not modelled 11.1 38 PDB header:toxin Chain: A: PDB Molecule:pesticidal crystal protein cry4aa; PDBTitle: structure of the functional form of the mosquito-larvicidal2 cry4aa toxin from bacillus thuringiensis at 2.8 a3 resolution 45 c2k4mA_ not modelled 11.1 28 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0146 protein mth_1000; PDBTitle: solution nmr structure of m. thermoautotrophicum protein2 mth_1000, northeast structural genomics consortium target3 tr8 46 c2e3lA_ not modelled 10.8 33 PDB header:transcription Chain: A: PDB Molecule:transcription factor gtf2ird2 beta; PDBTitle: solution structure of rsgi ruh-068, a gtf2i domain in human2 cdna 47 c2ed2A_ not modelled 10.7 42 PDB header:transcription Chain: A: PDB Molecule:general transcription factor ii-i; PDBTitle: solution structure of rsgi ruh-069, a gtf2i domain in human2 cdna 48 d2ceia1 not modelled 10.5 40 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 49 c2dzqA_ not modelled 10.4 50 PDB header:transcription Chain: A: PDB Molecule:general transcription factor ii-i repeat domain- PDBTitle: solution structure of rsgi ruh-066, a gtf2i domain in human2 cdna 50 d1rcda_ not modelled 10.0 32 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 51 d1x52a1 not modelled 9.7 19 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:ERF1/Dom34 C-terminal domain-like 52 d2fzcb1 not modelled 9.3 30 Fold:Ferredoxin-like Superfamily:Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain Family:Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain 53 c2h3eB_ not modelled 8.7 28 PDB header:transferase Chain: B: PDB Molecule:aspartate carbamoyltransferase regulatory chain; PDBTitle: structure of wild-type e. coli aspartate transcarbamoylase in the2 presence of n-phosphonacetyl-l-isoasparagine at 2.3a resolution 54 d1pg5b1 not modelled 8.6 40 Fold:Ferredoxin-like Superfamily:Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain Family:Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain 55 d1nz9a_ not modelled 8.6 53 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 56 c2b39B_ not modelled 8.5 17 PDB header:immune system Chain: B: PDB Molecule:c3; PDBTitle: structure of mammalian c3 with an intact thioester at 3a resolution 57 c3izq1_ not modelled 8.3 33 PDB header:ribosomal protein,hydrolase Chain: 1: PDB Molecule:elongation factor 1 alpha-like protein; PDBTitle: structure of the dom34-hbs1-gdpnp complex bound to a translating2 ribosome 58 c3degC_ not modelled 8.1 26 PDB header:ribosome Chain: C: PDB Molecule:gtp-binding protein lepa; PDBTitle: complex of elongating escherichia coli 70s ribosome and ef4(lepa)-2 gmppnp 59 d2do3a1 not modelled 8.1 47 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:SPT5 KOW domain-like 60 c2be7E_ not modelled 7.9 15 PDB header:transferase Chain: E: PDB Molecule:aspartate carbamoyltransferase regulatory chain; PDBTitle: crystal structure of the unliganded (t-state) aspartate2 transcarbamoylase of the psychrophilic bacterium moritella profunda 61 c1pg5B_ not modelled 7.7 40 PDB header:transferase Chain: B: PDB Molecule:aspartate carbamoyltransferase regulatory chain; PDBTitle: crystal structure of the unligated (t-state) aspartate2 transcarbamoylase from the extremely thermophilic archaeon sulfolobus3 acidocaldarius 62 c2oghA_ not modelled 7.7 13 PDB header:translation Chain: A: PDB Molecule:eukaryotic translation initiation factor eif-1; PDBTitle: solution structure of yeast eif1 63 c2ywfA_ not modelled 7.6 24 PDB header:translation Chain: A: PDB Molecule:gtp-binding protein lepa; PDBTitle: crystal structure of gmppnp-bound lepa from aquifex aeolicus 64 c3bdeA_ not modelled 7.2 19 PDB header:unknown function Chain: A: PDB Molecule:mll5499 protein; PDBTitle: crystal structure of a dabb family protein with a ferredoxin-like fold2 (mll5499) from mesorhizobium loti maff303099 at 1.79 a resolution 65 c2xg8D_ not modelled 7.2 38 PDB header:transcription Chain: D: PDB Molecule:pipx; PDBTitle: structural basis of gene regulation by protein pii: the2 crystal complex of pii and pipx from synechococcus3 elongatus pcc 7942 66 c3n5bB_ not modelled 7.1 38 PDB header:transcription regulator Chain: B: PDB Molecule:asr0485 protein; PDBTitle: the complex of pii and pipx from anabaena 67 d2vgna3 not modelled 7.1 7 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:ERF1/Dom34 C-terminal domain-like 68 c3cb4D_ not modelled 7.1 31 PDB header:translation Chain: D: PDB Molecule:gtp-binding protein lepa; PDBTitle: the crystal structure of lepa 69 c3kopB_ not modelled 7.0 20 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein with a cyclophilin-like fold2 (yp_831253.1) from arthrobacter sp. fb24 at 1.90 a resolution 70 c2diuA_ not modelled 6.9 28 PDB header:rna binding protein Chain: A: PDB Molecule:kiaa0430 protein; PDBTitle: solution structure of the rrm domain of kiaa0430 protein 71 c3seeA_ not modelled 6.8 18 PDB header:sugar binding protein Chain: A: PDB Molecule:hypothetical sugar binding protein; PDBTitle: crystal structure of a hypothetical sugar binding protein (bt_4411)2 from bacteroides thetaiotaomicron vpi-5482 at 1.25 a resolution 72 c3ebkA_ not modelled 6.7 50 PDB header:allergen Chain: A: PDB Molecule:allergen bla g 4; PDBTitle: crystal structure of major allergens, bla g 4 from2 cockroaches 73 d1nppa2 not modelled 6.6 43 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 74 c2xexA_ not modelled 6.5 60 PDB header:translation Chain: A: PDB Molecule:elongation factor g; PDBTitle: crystal structure of staphylococcus aureus elongation factor2 g 75 d1l5oa_ not modelled 6.5 21 Fold:Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) Superfamily:Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) Family:Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) 76 c3tr5C_ not modelled 6.5 47 PDB header:translation Chain: C: PDB Molecule:peptide chain release factor 3; PDBTitle: structure of a peptide chain release factor 3 (prfc) from coxiella2 burnetii 77 c2ywwA_ not modelled 6.5 22 PDB header:metal binding protein Chain: A: PDB Molecule:aspartate carbamoyltransferase regulatory chain; PDBTitle: crystal structure of aspartate carbamoyltransferase2 regulatory chain from methanocaldococcus jannaschii 78 c1ciyA_ not modelled 6.2 32 PDB header:toxin Chain: A: PDB Molecule:cryia(a); PDBTitle: insecticidal toxin: structure and channel formation 79 c1dlcA_ not modelled 5.9 28 PDB header:toxin Chain: A: PDB Molecule:delta-endotoxin cryiiia; PDBTitle: crystal structure of insecticidal delta-endotoxin from2 bacillus thuringiensis at 2.5 angstroms resolution 80 d2atcb1 not modelled 5.9 20 Fold:Ferredoxin-like Superfamily:Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain Family:Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain 81 c3bb5B_ not modelled 5.8 9 PDB header:unknown function Chain: B: PDB Molecule:stress responsive alpha-beta protein; PDBTitle: crystal structure of a dimeric ferredoxin-like protein of unknown2 function (jann_3925) from jannaschia sp. ccs1 at 2.30 a resolution 82 c2zxeG_ not modelled 5.6 33 PDB header:hydrolase/transport protein Chain: G: PDB Molecule:phospholemman-like protein; PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state 83 c1ji6A_ not modelled 5.4 19 PDB header:toxin Chain: A: PDB Molecule:pesticidial crystal protein cry3bb; PDBTitle: crystal structure of the insecticidal bacterial del2 endotoxin cry3bb1 bacillus thuringiensis 84 d1vqot1 not modelled 5.3 35 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 85 c1zn0B_ not modelled 5.1 60 PDB header:translation/biosynthetic protein/rna Chain: B: PDB Molecule:elongation factor g; PDBTitle: coordinates of rrf and ef-g fitted into cryo-em map of the2 50s subunit bound with both ef-g (gdpnp) and rrf

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0