Email l.a.kelley@imperial.ac.uk Description P24192 Date Wed Jan 25 15:20:44 GMT 2012 Unique Job ID 143b8c89f76fe94d

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2z1dA_ 100.0 38 PDB header:metal binding protein Chain: A: PDB Molecule:hydrogenase expression/formation protein hypd; PDBTitle: crystal structure of [nife] hydrogenase maturation protein, hypd from2 thermococcus kodakaraensis 2 d7reqa2 95.1 14 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 3 d1gqna_ 90.6 21 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 4 c3bicA_ 88.5 12 PDB header:isomerase Chain: A: PDB Molecule:methylmalonyl-coa mutase, mitochondrial precursor; PDBTitle: crystal structure of human methylmalonyl-coa mutase 5 c2yxbA_ 87.1 17 PDB header:isomerase Chain: A: PDB Molecule:coenzyme b12-dependent mutase; PDBTitle: crystal structure of the methylmalonyl-coa mutase alpha-subunit from2 aeropyrum pernix 6 c2k8sA_ 86.4 30 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: solution nmr structure of dimeric thioredoxin-like protein2 ne0084 from nitrosomonas europea: northeast structural3 genomics target net6 7 c3l2iB_ 86.2 16 PDB header:lyase Chain: B: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: 1.85 angstrom crystal structure of the 3-dehydroquinate dehydratase2 (arod) from salmonella typhimurium lt2. 8 c3js3C_ 83.9 21 PDB header:lyase Chain: C: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: crystal structure of type i 3-dehydroquinate dehydratase (arod) from2 clostridium difficile with covalent reaction intermediate 9 c2yr1B_ 81.5 20 PDB header:lyase Chain: B: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: crystal structure of 3-dehydroquinate dehydratase from geobacillus2 kaustophilus hta426 10 c2q5cA_ 78.1 9 PDB header:transcription Chain: A: PDB Molecule:ntrc family transcriptional regulator; PDBTitle: crystal structure of ntrc family transcriptional regulator from2 clostridium acetobutylicum 11 d1poib_ 73.5 22 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase beta subunit-like 12 c2pjuD_ 72.4 13 PDB header:transcription Chain: D: PDB Molecule:propionate catabolism operon regulatory protein; PDBTitle: crystal structure of propionate catabolism operon2 regulatory protein prpr 13 d1ccwa_ 70.8 14 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 14 d2pjua1 69.8 13 Fold:Chelatase-like Superfamily:PrpR receptor domain-like Family:PrpR receptor domain-like 15 c3fldA_ 67.4 23 PDB header:hydrolase Chain: A: PDB Molecule:protein trai; PDBTitle: crystal structure of the trai c-terminal domain 16 d1oaoa_ 61.7 17 Fold:Prismane protein-like Superfamily:Prismane protein-like Family:Carbon monoxide dehydrogenase 17 c1e1cA_ 60.3 18 PDB header:isomerase Chain: A: PDB Molecule:methylmalonyl-coa mutase alpha chain; PDBTitle: methylmalonyl-coa mutase h244a mutant 18 d1su7a_ 60.3 13 Fold:Prismane protein-like Superfamily:Prismane protein-like Family:Carbon monoxide dehydrogenase 19 c1jqkE_ 56.6 15 PDB header:oxidoreductase Chain: E: PDB Molecule:carbon monoxide dehydrogenase; PDBTitle: crystal structure of carbon monoxide dehydrogenase from2 rhodospirillum rubrum 20 c3lteH_ 55.9 13 PDB header:transcription Chain: H: PDB Molecule:response regulator; PDBTitle: crystal structure of response regulator (signal receiver domain) from2 bermanella marisrubri 21 d2pl1a1 not modelled 54.1 14 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 22 d1jqka_ not modelled 54.1 15 Fold:Prismane protein-like Superfamily:Prismane protein-like Family:Carbon monoxide dehydrogenase 23 d1sfla_ not modelled 53.3 10 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 24 c2axoA_ not modelled 53.1 21 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein atu2684; PDBTitle: x-ray crystal structure of protein agr_c_4864 from agrobacterium2 tumefaciens. northeast structural genomics consortium target atr35. 25 d2fug61 not modelled 49.0 28 Fold:HydA/Nqo6-like Superfamily:HydA/Nqo6-like Family:Nq06-like 26 d1iloa_ not modelled 45.5 21 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 27 d1olta_ not modelled 44.4 18 Fold:TIM beta/alpha-barrel Superfamily:Radical SAM enzymes Family:Oxygen-independent coproporphyrinogen III oxidase HemN 28 c1e5dA_ not modelled 43.9 14 PDB header:oxidoreductase Chain: A: PDB Molecule:rubredoxin\:oxygen oxidoreductase; PDBTitle: rubredoxin oxygen:oxidoreductase (roo) from anaerobe2 desulfovibrio gigas 29 c1e5lA_ not modelled 42.3 18 PDB header:oxidoreductase Chain: A: PDB Molecule:saccharopine reductase; PDBTitle: apo saccharopine reductase from magnaporthe grisea 30 d2axoa1 not modelled 40.8 18 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Atu2684-like 31 c3gt7A_ not modelled 39.5 13 PDB header:hydrolase Chain: A: PDB Molecule:sensor protein; PDBTitle: crystal structure of signal receiver domain of signal2 transduction histidine kinase from syntrophus3 aciditrophicus 32 c2qs0A_ not modelled 38.6 16 PDB header:biosynthetic protein Chain: A: PDB Molecule:quinolinate synthetase a; PDBTitle: quinolinate synthase from pyrococcus furiosus 33 d1rjda_ not modelled 36.2 27 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Leucine carboxy methyltransferase Ppm1 34 d1mb6a_ not modelled 36.0 31 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:omega toxin-like Family:Spider toxins 35 d1niya_ not modelled 35.9 46 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:omega toxin-like Family:Spider toxins 36 c3c3mA_ not modelled 35.8 10 PDB header:signaling protein Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of the n-terminal domain of response regulator2 receiver protein from methanoculleus marisnigri jr1 37 d1fmfa_ not modelled 34.6 13 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 38 d1mvoa_ not modelled 34.1 13 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 39 c2jk1A_ not modelled 33.3 12 PDB header:dna-binding Chain: A: PDB Molecule:hydrogenase transcriptional regulatory protein hupr1; PDBTitle: crystal structure of the wild-type hupr receiver domain 40 d1nixa_ not modelled 32.9 38 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:omega toxin-like Family:Spider toxins 41 c2zayA_ not modelled 32.8 10 PDB header:signaling protein Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of response regulator from desulfuromonas2 acetoxidans 42 c3cnbC_ not modelled 32.7 14 PDB header:dna binding protein Chain: C: PDB Molecule:dna-binding response regulator, merr family; PDBTitle: crystal structure of signal receiver domain of dna binding response2 regulator protein (merr) from colwellia psychrerythraea 34h 43 d1mxsa_ not modelled 32.4 14 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 44 d2pw9a1 not modelled 31.1 10 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:FdhD/NarQ 45 d2dvta1 not modelled 30.9 13 Fold:TIM beta/alpha-barrel Superfamily:Metallo-dependent hydrolases Family:PP1699/LP2961-like 46 d1zesa1 not modelled 29.5 12 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 47 d1i5ea_ not modelled 29.0 16 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 48 d1wyza1 not modelled 28.9 17 Fold:Tetrapyrrole methylase Superfamily:Tetrapyrrole methylase Family:Tetrapyrrole methylase 49 d1xcfa_ not modelled 27.9 12 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 50 c3bo9B_ not modelled 27.6 19 PDB header:oxidoreductase Chain: B: PDB Molecule:putative nitroalkan dioxygenase; PDBTitle: crystal structure of putative nitroalkan dioxygenase (tm0800) from2 thermotoga maritima at 2.71 a resolution 51 d2c4va1 not modelled 27.1 14 Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase 52 d1dcfa_ not modelled 27.1 13 Fold:Flavodoxin-like Superfamily:CheY-like Family:Receiver domain of the ethylene receptor 53 d1efpb_ not modelled 26.9 21 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 54 c1iclA_ not modelled 26.5 100 PDB header:de novo protein Chain: A: PDB Molecule:th1ox; PDBTitle: solution structure of designed beta-sheet mini-protein th1ox 55 c3h31A_ not modelled 26.4 21 PDB header:electron transport Chain: A: PDB Molecule:high potential iron-sulfur protein; PDBTitle: structure of rhodothermus marinus hipip at 1.0 a resolution 56 c3bw2A_ not modelled 26.1 16 PDB header:oxidoreductase Chain: A: PDB Molecule:2-nitropropane dioxygenase; PDBTitle: crystal structures and site-directed mutagenesis study of nitroalkane2 oxidase from streptomyces ansochromogenes 57 c2nt3A_ not modelled 24.4 11 PDB header:signaling protein Chain: A: PDB Molecule:response regulator homolog; PDBTitle: receiver domain from myxococcus xanthus social motility protein frzs2 (y102a mutant) 58 d1xtta1 not modelled 24.0 18 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 59 c2qzjC_ not modelled 23.8 16 PDB header:transcription Chain: C: PDB Molecule:two-component response regulator; PDBTitle: crystal structure of a two-component response regulator from2 clostridium difficile 60 c3ktoA_ not modelled 23.7 10 PDB header:transcription regulator Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of response regulator receiver protein2 from pseudoalteromonas atlantica 61 c2e55D_ not modelled 23.6 20 PDB header:transferase Chain: D: PDB Molecule:uracil phosphoribosyltransferase; PDBTitle: structure of aq2163 protein from aquifex aeolicus 62 c3epmB_ not modelled 23.4 38 PDB header:biosynthetic protein Chain: B: PDB Molecule:thiamine biosynthesis protein thic; PDBTitle: crystal structure of caulobacter crescentus thic 63 d1v9sa1 not modelled 22.7 16 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 64 c2p2vA_ not modelled 22.3 15 PDB header:transferase Chain: A: PDB Molecule:alpha-2,3-sialyltransferase; PDBTitle: crystal structure analysis of monofunctional alpha-2,3-2 sialyltransferase cst-i from campylobacter jejuni 65 d1o58a_ not modelled 22.3 22 Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes 66 c2o7qA_ not modelled 22.3 16 PDB header:oxidoreductase,transferase Chain: A: PDB Molecule:bifunctional 3-dehydroquinate dehydratase/shikimate PDBTitle: crystal structure of the a. thaliana dhq-dehydroshikimate-sdh-2 shikimate-nadp(h) 67 c1q68A_ not modelled 20.5 47 PDB header:membrane protein/transferase Chain: A: PDB Molecule:t-cell surface glycoprotein cd4; PDBTitle: solution structure of t-cell surface glycoprotein cd4 and2 proto-oncogene tyrosine-protein kinase lck fragments 68 c1e8cB_ not modelled 20.4 19 PDB header:ligase Chain: B: PDB Molecule:udp-n-acetylmuramoylalanyl-d-glutamate--2,6- PDBTitle: structure of mure the udp-n-acetylmuramyl tripeptide2 synthetase from e. coli 69 c2jtbA_ not modelled 20.1 42 PDB header:toxin Chain: A: PDB Molecule:hainantoxin-3; PDBTitle: three dimensional solution structure of hainantoxin-iii by2 2d 1h-nmr 70 c3o3nB_ not modelled 20.1 16 PDB header:lyase Chain: B: PDB Molecule:beta-subunit 2-hydroxyacyl-coa dehydratase; PDBTitle: (r)-2-hydroxyisocaproyl-coa dehydratase in complex with its substrate2 (r)-2-hydroxyisocaproyl-coa 71 d7odca2 not modelled 20.1 14 Fold:TIM beta/alpha-barrel Superfamily:PLP-binding barrel Family:Alanine racemase-like, N-terminal domain 72 c2oczA_ not modelled 19.9 13 PDB header:lyase Chain: A: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: the structure of a putative 3-dehydroquinate dehydratase from2 streptococcus pyogenes. 73 c3kwpA_ not modelled 19.6 14 PDB header:transferase Chain: A: PDB Molecule:predicted methyltransferase; PDBTitle: crystal structure of putative methyltransferase from lactobacillus2 brevis 74 c2g40A_ not modelled 19.5 4 PDB header:unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of a duf162 family protein (dr_1909) from2 deinococcus radiodurans at 1.70 a resolution 75 d2g40a1 not modelled 19.5 4 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:YkgG-like 76 d1uqra_ not modelled 19.4 16 Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase 77 d1gtza_ not modelled 19.2 20 Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase 78 c2qsjB_ not modelled 19.0 18 PDB header:transcription Chain: B: PDB Molecule:dna-binding response regulator, luxr family; PDBTitle: crystal structure of a luxr family dna-binding response2 regulator from silicibacter pomeroyi 79 c3hdgE_ not modelled 19.0 13 PDB header:structural genomics, unknown function Chain: E: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the n-terminal domain of an2 uncharacterized protein (ws1339) from wolinella3 succinogenes 80 d1k3sa_ not modelled 18.5 19 Fold:Secretion chaperone-like Superfamily:Type III secretory system chaperone-like Family:Type III secretory system chaperone 81 c3ju3A_ not modelled 18.1 13 PDB header:oxidoreductase Chain: A: PDB Molecule:probable 2-oxoacid ferredoxin oxidoreductase, alpha chain; PDBTitle: crystal structure of alpha chain of probable 2-oxoacid ferredoxin2 oxidoreductase from thermoplasma acidophilum 82 c2iv0A_ not modelled 17.9 16 PDB header:oxidoreductase Chain: A: PDB Molecule:isocitrate dehydrogenase; PDBTitle: thermal stability of isocitrate dehydrogenase from2 archaeoglobus fulgidus studied by crystal structure3 analysis and engineering of chimers 83 c2fgxA_ not modelled 17.9 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative thioredoxin; PDBTitle: solution nmr structure of protein ne2328 from nitrosomonas2 europaea. northeast structural genomics consortium target3 net3. 84 d3clsc1 not modelled 17.3 17 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 85 c2nvwB_ not modelled 17.2 11 PDB header:transcription Chain: B: PDB Molecule:galactose/lactose metabolism regulatory protein PDBTitle: crystal sctucture of transcriptional regulator gal80p from2 kluyveromymes lactis 86 c3kcnA_ not modelled 17.1 14 PDB header:lyase Chain: A: PDB Molecule:adenylate cyclase homolog; PDBTitle: the crystal structure of adenylate cyclase from2 rhodopirellula baltica 87 d1s4da_ not modelled 16.6 15 Fold:Tetrapyrrole methylase Superfamily:Tetrapyrrole methylase Family:Tetrapyrrole methylase 88 d1o5oa_ not modelled 16.5 14 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 89 c3shoA_ not modelled 16.4 14 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, rpir family; PDBTitle: crystal structure of rpir transcription factor from sphaerobacter2 thermophilus (sugar isomerase domain) 90 d1j6ua2 not modelled 16.2 16 Fold:MurD-like peptide ligases, peptide-binding domain Superfamily:MurD-like peptide ligases, peptide-binding domain Family:MurCDEF C-terminal domain 91 c2yswB_ not modelled 16.1 13 PDB header:lyase Chain: B: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: crystal structure of the 3-dehydroquinate dehydratase from aquifex2 aeolicus vf5 92 c3myrE_ not modelled 16.0 23 PDB header:oxidoreductase Chain: E: PDB Molecule:hydrogenase (nife) small subunit hyda; PDBTitle: crystal structure of [nife] hydrogenase from allochromatium vinosum in2 its ni-a state 93 d1ey1a_ not modelled 15.8 16 Fold:NusB-like Superfamily:NusB-like Family:Antitermination factor NusB 94 c3h5iA_ not modelled 15.7 10 PDB header:transcription Chain: A: PDB Molecule:response regulator/sensory box protein/ggdef PDBTitle: crystal structure of the n-terminal domain of a response2 regulator/sensory box/ggdef 3-domain protein from3 carboxydothermus hydrogenoformans 95 c3hdvB_ not modelled 15.6 15 PDB header:transcription regulator Chain: B: PDB Molecule:response regulator; PDBTitle: crystal structure of response regulator receiver protein from2 pseudomonas putida 96 d1e8ca2 not modelled 15.5 17 Fold:MurD-like peptide ligases, peptide-binding domain Superfamily:MurD-like peptide ligases, peptide-binding domain Family:MurCDEF C-terminal domain 97 d2bb3a1 not modelled 15.2 20 Fold:Tetrapyrrole methylase Superfamily:Tetrapyrrole methylase Family:Tetrapyrrole methylase 98 d1l0sa_ not modelled 15.0 63 Fold:Single-stranded left-handed beta-helix Superfamily:An insect antifreeze protein Family:An insect antifreeze protein 99 c1o5zA_ not modelled 14.9 13 PDB header:ligase Chain: A: PDB Molecule:folylpolyglutamate synthase/dihydrofolate synthase; PDBTitle: crystal structure of folylpolyglutamate synthase (tm0166) from2 thermotoga maritima at 2.10 a resolution