Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	F	N	R	I	R	I	S	T	T	L	F	L	I	L	I	L	C	G	I	L	Q	I	G	S	N	G	M	S	F	W	A	F	R	D	D	L	Q	R	L	N	Q	V	E	Q	S	N	Q	Q	R	A	A	L	A	Q	T	R	A	V	M
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	Q	A	S	T	A	L	N	K	A	G	T	L	T	A	L	S	Y	P	A	D	D	I	K	T	L	M	T	T	A	R	A	S	L	T	Q	S	T	T	L	F	K	S	F	M	A	M	T	A	G	N	E	H	V	R	G	L	Q	K	E
Secondary structure
SS confidence
Disorder															?	?	?	?	?	?	?																										?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		T	E	K	S	F	A	R	W	H	N	D	L	E	H	Q	A	T	W	L	E	S	N	Q	L	S	D	F	L	T	A	P	V	Q	G	S	Q	N	A	F	D	V	N	F	E	A	W	Q	L	E	I	N	H	V	L	E	A	A	S	A	Q
Secondary structure
SS confidence
Disorder																					?			?	?						?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		S	Q	R	N	Y	Q	I	S	A	L	V	F	I	S	M	I	I	V	A	A	I	Y	I	S	S	A	L	W	W	T	R	K	M	I	V	Q	P	L	A	I	I	G	S	H	F	D	S	I	A	A	G	N	L	A	R	P	I	A	V	Y
Secondary structure
SS confidence
Disorder																																																						?			?	?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		G	R	N	E	I	T	A	I	F	A	S	L	K	T	M	Q	Q	A	L	R	G	T	V	S	D	V	R	K	G	S	Q	E	M	H	I	G	I	A	E	I	V	A	G	N	N	D	L	S	S	R	T	E	Q	Q	A	A	S	L	A	Q
Secondary structure
SS confidence
Disorder		?	?	?																																									?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		T	A	A	S	M	E	Q	L	T	A	T	V	G	Q	N	A	D	N	A	R	Q	A	S	E	L	A	K	N	A	A	T	T	A	Q	A	G	G	V	Q	V	S	T	M	T	H	T	M	Q	E	I	A	T	S	S	Q	K	I	G	D	I
Secondary structure
SS confidence
Disorder																?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		I	S	V	I	D	G	I	A	F	Q	T	N	I	L	A	L	N	A	A	V	E	A	A	R	A	G	E	Q	G	R	G	F	A	V	V	A	G	E	V	R	N	L	A	S	R	S	A	Q	A	A	K	E	I	K	G	L	I	E	E	S
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		V	N	R	V	Q	Q	G	S	K	L	V	N	N	A	A	A	T	M	I	D	I	V	S	S	V	T	R	V	N	D	I	M	G	E	I	A	S	A	S	E	E	Q	Q	R	G	I	E	Q	V	A	Q	A	V	S	Q	M	D	Q	V	T
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.
Sequence		Q	Q	N	A	S	L	V	E	E	A	A	V	A	T	E	Q	L	A	N	Q	A	D	H	L	S	S	R	V	A	V	F	T	L	E	E	H	E	V	A	R	H	E	S	V	Q	L	Q	I	A	P	V	V	S
Secondary structure
SS confidence
Disorder																																?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1qu7 chain A Region: 290 - 516 Aligned: 227 Modelled: 227 Confidence: 99.9% Identity: 72% PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein i; PDBTitle: four helical-bundle structure of the cytoplasmic domain of a serine2 chemotaxis receptor Phyre2 PDB 2ch7 chain A Region: 243 - 512 Aligned: 270 Modelled: 270 Confidence: 99.8% Identity: 24% PDB header:chemotaxis Chain: A: PDB Molecule:methyl-accepting chemotaxis protein; PDBTitle: crystal structure of the cytoplasmic domain of a bacterial2 chemoreceptor from thermotoga maritima Phyre2 PDB 3g67 chain A Region: 279 - 491 Aligned: 213 Modelled: 213 Confidence: 99.7% Identity: 23% PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein; PDBTitle: crystal structure of a soluble chemoreceptor from thermotoga2 maritima Phyre2 PDB 3lnr chain A Region: 203 - 372 Aligned: 152 Modelled: 152 Confidence: 98.6% Identity: 14% PDB header:signaling protein Chain: A: PDB Molecule:aerotaxis transducer aer2; PDBTitle: crystal structure of poly-hamp domains from the p. aeruginosa soluble2 receptor aer2 Phyre2 PDB 2d4u chain A Region: 23 - 182 Aligned: 160 Modelled: 160 Confidence: 98.6% Identity: 21% PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein i; PDBTitle: crystal structure of the ligand binding domain of the bacterial serine2 chemoreceptor tsr Phyre2 PDB 2lig chain A Region: 25 - 175 Aligned: 150 Modelled: 151 Confidence: 97.9% Identity: 19% Fold: Four-helical up-and-down bundle Superfamily: Aspartate receptor, ligand-binding domain Family: Aspartate receptor, ligand-binding domain Phyre2 PDB 2asx chain A domain 1 Region: 213 - 264 Aligned: 52 Modelled: 52 Confidence: 97.8% Identity: 23% Fold: HAMP domain-like Superfamily: HAMP domain-like Family: HAMP domain Phyre2 PDB 2rm8 chain A Region: 228 - 289 Aligned: 62 Modelled: 62 Confidence: 97.7% Identity: 18% PDB header:signaling protein Chain: A: PDB Molecule:sensory rhodopsin ii transducer; PDBTitle: the solution structure of phototactic transducer protein2 htrii linker region from natronomonas pharaonis Phyre2 PDB 1sj8 chain A Region: 273 - 511 Aligned: 235 Modelled: 239 Confidence: 97.4% Identity: 11% PDB header:structural protein Chain: A: PDB Molecule:talin 1; PDBTitle: crystal structure of talin residues 482-789 Phyre2 PDB 3zrw chain B Region: 213 - 315 Aligned: 103 Modelled: 103 Confidence: 97.2% Identity: 18% PDB header:signaling protein Chain: B: PDB Molecule:af1503 protein, osmolarity sensor protein envz; PDBTitle: the structure of the dimeric hamp-dhp fusion a291v mutant Phyre2 PDB 2asr chain A Region: 39 - 174 Aligned: 135 Modelled: 136 Confidence: 96.7% Identity: 20% Fold: Four-helical up-and-down bundle Superfamily: Aspartate receptor, ligand-binding domain Family: Aspartate receptor, ligand-binding domain Phyre2 PDB 1vlt chain A Region: 44 - 170 Aligned: 126 Modelled: 127 Confidence: 96.4% Identity: 20% Fold: Four-helical up-and-down bundle Superfamily: Aspartate receptor, ligand-binding domain Family: Aspartate receptor, ligand-binding domain Phyre2 PDB 3dyj chain A Region: 212 - 512 Aligned: 296 Modelled: 301 Confidence: 95.4% Identity: 11% PDB header:structural protein Chain: A: PDB Molecule:talin-1; PDBTitle: crystal structure a talin rod fragment Phyre2 PDB 2wpq chain A Region: 417 - 512 Aligned: 96 Modelled: 96 Confidence: 94.0% Identity: 7% PDB header:membrane protein Chain: A: PDB Molecule:trimeric autotransporter adhesin fragment; PDBTitle: salmonella enterica sada 479-519 fused to gcn4 adaptors (2 sadak3, in-register fusion) Phyre2 PDB 3oja chain B Region: 397 - 510 Aligned: 114 Modelled: 114 Confidence: 80.5% Identity: 11% PDB header:protein binding Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein PDBTitle: crystal structure of lrim1/apl1c complex Phyre2 PDB 2kbb chain A Region: 355 - 511 Aligned: 152 Modelled: 157 Confidence: 77.6% Identity: 11% PDB header:structural protein Chain: A: PDB Molecule:talin-1; PDBTitle: nmr structure of the talin rod domain, 1655-1822 Phyre2 PDB 3gvm chain A Region: 386 - 475 Aligned: 89 Modelled: 90 Confidence: 72.9% Identity: 11% PDB header:viral protein Chain: A: PDB Molecule:putative uncharacterized protein sag1039; PDBTitle: structure of the homodimeric wxg-100 family protein from streptococcus2 agalactiae Phyre2 PDB 1ei3 chain E Region: 402 - 531 Aligned: 128 Modelled: 130 Confidence: 67.7% Identity: 12% PDB header: PDB COMPND: Phyre2 PDB 2vs0 chain B Region: 394 - 461 Aligned: 68 Modelled: 67 Confidence: 67.1% Identity: 12% PDB header:cell invasion Chain: B: PDB Molecule:virulence factor esxa; PDBTitle: structural analysis of homodimeric staphylococcal aureus2 virulence factor esxa Phyre2 PDB 1deq chain O Region: 401 - 531 Aligned: 129 Modelled: 129 Confidence: 66.6% Identity: 12% PDB header: PDB COMPND: Phyre2 1 c1qu7A_ 2 c2ch7A_ 3 c3g67A_ 4 c3lnrA_ 5 c2d4uA_ 6 d2liga_ 7 d2asxa1 8 c2rm8A_ 9 c1sj8A_ 10 c3zrwB_ 11 d2asra_ 12 d1vlta_ 13 c3dyjA_ 14 c2wpqA_ 15 c3ojaB_ 16 c2kbbA_ 17 c3gvmA_ 18 c1ei3E_ 19 c2vs0B_ 20 c1deqO_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1qu7A_ 99.9 72 PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein i; PDBTitle: four helical-bundle structure of the cytoplasmic domain of a serine2 chemotaxis receptor 2 c2ch7A_ 99.8 24 PDB header:chemotaxis Chain: A: PDB Molecule:methyl-accepting chemotaxis protein; PDBTitle: crystal structure of the cytoplasmic domain of a bacterial2 chemoreceptor from thermotoga maritima 3 c3g67A_ 99.7 23 PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein; PDBTitle: crystal structure of a soluble chemoreceptor from thermotoga2 maritima 4 c3lnrA_ 98.6 14 PDB header:signaling protein Chain: A: PDB Molecule:aerotaxis transducer aer2; PDBTitle: crystal structure of poly-hamp domains from the p. aeruginosa soluble2 receptor aer2 5 c2d4uA_ 98.6 21 PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein i; PDBTitle: crystal structure of the ligand binding domain of the bacterial serine2 chemoreceptor tsr 6 d2liga_ 97.9 19 Fold:Four-helical up-and-down bundle Superfamily:Aspartate receptor, ligand-binding domain Family:Aspartate receptor, ligand-binding domain 7 d2asxa1 97.8 23 Fold:HAMP domain-like Superfamily:HAMP domain-like Family:HAMP domain 8 c2rm8A_ 97.7 18 PDB header:signaling protein Chain: A: PDB Molecule:sensory rhodopsin ii transducer; PDBTitle: the solution structure of phototactic transducer protein2 htrii linker region from natronomonas pharaonis 9 c1sj8A_ 97.4 11 PDB header:structural protein Chain: A: PDB Molecule:talin 1; PDBTitle: crystal structure of talin residues 482-789 10 c3zrwB_ 97.2 18 PDB header:signaling protein Chain: B: PDB Molecule:af1503 protein, osmolarity sensor protein envz; PDBTitle: the structure of the dimeric hamp-dhp fusion a291v mutant 11 d2asra_ 96.7 20 Fold:Four-helical up-and-down bundle Superfamily:Aspartate receptor, ligand-binding domain Family:Aspartate receptor, ligand-binding domain 12 d1vlta_ 96.4 20 Fold:Four-helical up-and-down bundle Superfamily:Aspartate receptor, ligand-binding domain Family:Aspartate receptor, ligand-binding domain 13 c3dyjA_ 95.4 11 PDB header:structural protein Chain: A: PDB Molecule:talin-1; PDBTitle: crystal structure a talin rod fragment 14 c2wpqA_ 94.0 7 PDB header:membrane protein Chain: A: PDB Molecule:trimeric autotransporter adhesin fragment; PDBTitle: salmonella enterica sada 479-519 fused to gcn4 adaptors (2 sadak3, in-register fusion) 15 c3ojaB_ 80.5 11 PDB header:protein binding Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein PDBTitle: crystal structure of lrim1/apl1c complex 16 c2kbbA_ 77.6 11 PDB header:structural protein Chain: A: PDB Molecule:talin-1; PDBTitle: nmr structure of the talin rod domain, 1655-1822 17 c3gvmA_ 72.9 11 PDB header:viral protein Chain: A: PDB Molecule:putative uncharacterized protein sag1039; PDBTitle: structure of the homodimeric wxg-100 family protein from streptococcus2 agalactiae 18 c1ei3E_ 67.7 12 PDB header: PDB COMPND: 19 c2vs0B_ 67.1 12 PDB header:cell invasion Chain: B: PDB Molecule:virulence factor esxa; PDBTitle: structural analysis of homodimeric staphylococcal aureus2 virulence factor esxa 20 c1deqO_ 66.6 12 PDB header: PDB COMPND: 21 c1ei3C_ not modelled 63.1 9 PDB header: PDB COMPND: 22 c1deqF_ not modelled 59.5 9 PDB header: PDB COMPND: 23 c2ieqC_ not modelled 55.0 13 PDB header:viral protein Chain: C: PDB Molecule:spike glycoprotein; PDBTitle: core structure of s2 from the human coronavirus nl63 spike2 glycoprotein 24 c2qihA_ not modelled 54.7 13 PDB header:cell adhesion Chain: A: PDB Molecule:protein uspa1; PDBTitle: crystal structure of 527-665 fragment of uspa1 protein from2 moraxella catarrhalis 25 c2d4yA_ not modelled 53.8 14 PDB header:structural protein Chain: A: PDB Molecule:flagellar hook-associated protein 1; PDBTitle: crystal structure of a 49k fragment of hap1 (flgk) 26 c3ghgK_ not modelled 43.9 15 PDB header:blood clotting Chain: K: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of human fibrinogen 27 c1urqA_ not modelled 42.8 21 PDB header:transport protein Chain: A: PDB Molecule:m-tomosyn isoform; PDBTitle: crystal structure of neuronal q-snares in complex with2 r-snare motif of tomosyn 28 c3ipdB_ not modelled 42.7 15 PDB header:exocytosis Chain: B: PDB Molecule:syntaxin-1a; PDBTitle: helical extension of the neuronal snare complex into the2 membrane, spacegroup i 21 21 21 29 c1sfcJ_ not modelled 39.6 16 PDB header:transport protein Chain: J: PDB Molecule:protein (syntaxin 1a); PDBTitle: neuronal synaptic fusion complex 30 c3hd7A_ not modelled 39.1 22 PDB header:exocytosis Chain: A: PDB Molecule:vesicle-associated membrane protein 2; PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1 31 c3b5nF_ not modelled 36.2 12 PDB header:membrane protein Chain: F: PDB Molecule:protein sso1; PDBTitle: structure of the yeast plasma membrane snare complex 32 c2npsB_ not modelled 30.3 16 PDB header:transport protein Chain: B: PDB Molecule:syntaxin 13; PDBTitle: crystal structure of the early endosomal snare complex 33 c2kseA_ not modelled 29.6 17 PDB header:transferase Chain: A: PDB Molecule:sensor protein qsec; PDBTitle: backbone structure of the membrane domain of e. coli2 histidine kinase receptor qsec, center for structures of3 membrane proteins (csmp) target 4311c 34 c1n7sA_ not modelled 29.6 22 PDB header:transport protein Chain: A: PDB Molecule:vesicle-associated membrane protein 2; PDBTitle: high resolution structure of a truncated neuronal snare2 complex 35 c2dnxA_ not modelled 29.3 12 PDB header:transport protein Chain: A: PDB Molecule:syntaxin-12; PDBTitle: solution structure of rsgi ruh-063, an n-terminal domain of2 syntaxin 12 from human cdna 36 c1i49A_ not modelled 29.2 10 PDB header:signaling protein Chain: A: PDB Molecule:arfaptin 2; PDBTitle: crystal structure analysis of arfaptin 37 c2npsD_ not modelled 28.8 12 PDB header:transport protein Chain: D: PDB Molecule:syntaxin-6; PDBTitle: crystal structure of the early endosomal snare complex 38 c3b5nE_ not modelled 28.3 15 PDB header:membrane protein Chain: E: PDB Molecule:synaptobrevin homolog 1; PDBTitle: structure of the yeast plasma membrane snare complex 39 c1n7sB_ not modelled 27.9 16 PDB header:transport protein Chain: B: PDB Molecule:syntaxin 1a; PDBTitle: high resolution structure of a truncated neuronal snare2 complex 40 c1gl2A_ not modelled 27.4 15 PDB header:membrane protein Chain: A: PDB Molecule:endobrevin; PDBTitle: crystal structure of an endosomal snare core complex 41 c1kmiZ_ not modelled 26.4 7 PDB header:signaling protein Chain: Z: PDB Molecule:chemotaxis protein chez; PDBTitle: crystal structure of an e.coli chemotaxis protein, chez 42 d1wa8a1 not modelled 25.2 11 Fold:Ferritin-like Superfamily:EsxAB dimer-like Family:ESAT-6 like 43 c1sfcI_ not modelled 25.2 22 PDB header:transport protein Chain: I: PDB Molecule:protein (synaptobrevin 2); PDBTitle: neuronal synaptic fusion complex 44 d1ez3a_ not modelled 24.1 11 Fold:STAT-like Superfamily:t-snare proteins Family:t-snare proteins 45 c2npsA_ not modelled 22.7 26 PDB header:transport protein Chain: A: PDB Molecule:vesicle-associated membrane protein 4; PDBTitle: crystal structure of the early endosomal snare complex 46 c1nafA_ not modelled 21.0 15 PDB header:signaling protein, membrane protein Chain: A: PDB Molecule:adp-ribosylation factor binding protein gga1; PDBTitle: crystal structure of the human gga1 gat domain 47 c1s94A_ not modelled 16.1 6 PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:s-syntaxin; PDBTitle: crystal structure of the habc domain of neuronal syntaxin from the2 squid loligo pealei 48 d1s94a_ not modelled 16.1 6 Fold:STAT-like Superfamily:t-snare proteins Family:t-snare proteins 49 c2bezC_ not modelled 15.8 15 PDB header:viral protein Chain: C: PDB Molecule:e2 glycoprotein; PDBTitle: structure of a proteolitically resistant core from the2 severe acute respiratory syndrome coronavirus s2 fusion3 protein 50 c1l4aD_ not modelled 15.8 8 PDB header:endocytosis/exocytosis Chain: D: PDB Molecule:s-snap25 fusion protein; PDBTitle: x-ray structure of the neuronal complexin/snare complex2 from the squid loligo pealei 51 c1sfcD_ not modelled 15.8 7 PDB header:transport protein Chain: D: PDB Molecule:protein (snap-25b); PDBTitle: neuronal synaptic fusion complex 52 c3c98B_ not modelled 15.7 11 PDB header:endocytosis/exocytosis Chain: B: PDB Molecule:syntaxin-1a; PDBTitle: revised structure of the munc18a-syntaxin1 complex 53 c3ok8A_ not modelled 14.5 7 PDB header:protein binding Chain: A: PDB Molecule:brain-specific angiogenesis inhibitor 1-associated protein PDBTitle: i-bar of pinkbar 54 c3arcl_ not modelled 14.3 30 PDB header:electron transport, photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution 55 c1l4aC_ not modelled 14.2 12 PDB header:endocytosis/exocytosis Chain: C: PDB Molecule:s-snap25 fusion protein; PDBTitle: x-ray structure of the neuronal complexin/snare complex2 from the squid loligo pealei 56 c2dq3A_ not modelled 13.7 7 PDB header:ligase Chain: A: PDB Molecule:seryl-trna synthetase; PDBTitle: crystal structure of aq_298 57 d1oxza_ not modelled 13.6 14 Fold:Spectrin repeat-like Superfamily:GAT-like domain Family:GAT domain 58 c1oxzA_ not modelled 13.6 14 PDB header:membrane protein Chain: A: PDB Molecule:adp-ribosylation factor binding protein gga1; PDBTitle: crystal structure of the human gga1 gat domain 59 d1rkea1 not modelled 13.5 10 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin 60 d1wa8b1 not modelled 13.4 13 Fold:Ferritin-like Superfamily:EsxAB dimer-like Family:ESAT-6 like 61 d1i4da_ not modelled 13.0 10 Fold:BAR/IMD domain-like Superfamily:BAR/IMD domain-like Family:Arfaptin, Rac-binding fragment 62 c1urqC_ not modelled 12.9 15 PDB header:transport protein Chain: C: PDB Molecule:synaptosomal-associated protein 25; PDBTitle: crystal structure of neuronal q-snares in complex with2 r-snare motif of tomosyn 63 c3hnwB_ not modelled 12.7 11 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a basic coiled-coil protein of unknown function2 from eubacterium eligens atcc 27750 64 c2efrB_ not modelled 12.0 9 PDB header:contractile protein Chain: B: PDB Molecule:general control protein gcn4 and tropomyosin 1 alpha chain; PDBTitle: crystal structure of the c-terminal tropomyosin fragment with n- and2 c-terminal extensions of the leucine zipper at 1.8 angstroms3 resolution 65 d2obpa1 not modelled 11.2 35 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ReutB4095-like 66 c1nfoA_ not modelled 11.0 17 PDB header:lipid transport Chain: A: PDB Molecule:apolipoprotein e2; PDBTitle: apolipoprotein e2 (apoe2, d154a mutation) 67 c3arcL_ not modelled 11.0 30 PDB header:electron transport, photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution 68 c3prqL_ not modelled 11.0 30 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 1 of 2). this file contains first monomer of psii3 dimer 69 c1s5ll_ not modelled 11.0 30 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: architecture of the photosynthetic oxygen evolving center 70 c3bz2L_ not modelled 11.0 30 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii (part 22 of 2). this file contains second monomer of psii dimer 71 c3a0bl_ not modelled 11.0 30 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of br-substituted photosystem ii complex 72 c3a0hl_ not modelled 11.0 30 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of i-substituted photosystem ii complex 73 c3a0hL_ not modelled 11.0 30 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of i-substituted photosystem ii complex 74 c3a0bL_ not modelled 11.0 30 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of br-substituted photosystem ii complex 75 c2axtl_ not modelled 11.0 30 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus 76 c1s5lL_ not modelled 11.0 30 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: architecture of the photosynthetic oxygen evolving center 77 c3bz1L_ not modelled 11.0 30 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii (part 12 of 2). this file contains first monomer of psii dimer 78 d2axtl1 not modelled 11.0 30 Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein L, PsbL Family:PsbL-like 79 c2axtL_ not modelled 11.0 30 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus 80 c3kziL_ not modelled 11.0 30 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of monomeric form of cyanobacterial photosystem ii 81 c3prrL_ not modelled 11.0 30 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 2 of 2). this file contains second monomer of psii3 dimer 82 c2js5B_ not modelled 10.9 6 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: nmr structure of protein q60c73_metca. northeast structural2 genomics consortium target mcr1 83 c3b5nL_ not modelled 10.9 11 PDB header:membrane protein Chain: L: PDB Molecule:protein transport protein sec9; PDBTitle: structure of the yeast plasma membrane snare complex 84 c3u59C_ not modelled 10.8 12 PDB header:contractile protein Chain: C: PDB Molecule:tropomyosin beta chain; PDBTitle: n-terminal 98-aa fragment of smooth muscle tropomyosin beta 85 c2d3eD_ not modelled 10.6 6 PDB header:contractile protein Chain: D: PDB Molecule:general control protein gcn4 and tropomyosin 1 PDBTitle: crystal structure of the c-terminal fragment of rabbit2 skeletal alpha-tropomyosin 86 c1zvaA_ not modelled 9.9 13 PDB header:viral protein Chain: A: PDB Molecule:e2 glycoprotein; PDBTitle: a structure-based mechanism of sars virus membrane fusion 87 c1gl2D_ not modelled 9.8 25 PDB header:membrane protein Chain: D: PDB Molecule:syntaxin 8; PDBTitle: crystal structure of an endosomal snare core complex 88 c3csxA_ not modelled 8.9 15 PDB header:metal binding protein,unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: structural characterization of a protein in the duf6832 family- crystal structure of cce_0567 from the3 cyanobacterium cyanothece 51142. 89 d1o3xa_ not modelled 8.8 15 Fold:Spectrin repeat-like Superfamily:GAT-like domain Family:GAT domain 90 c1zv8I_ not modelled 8.6 11 PDB header:viral protein Chain: I: PDB Molecule:e2 glycoprotein; PDBTitle: a structure-based mechanism of sars virus membrane fusion 91 d2h8pc1 not modelled 8.3 0 Fold:Voltage-gated potassium channels Superfamily:Voltage-gated potassium channels Family:Voltage-gated potassium channels 92 c2l9uA_ not modelled 8.3 21 PDB header:membrane protein Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-3; PDBTitle: spatial structure of dimeric erbb3 transmembrane domain 93 c2qrxA_ not modelled 8.3 11 PDB header:dna binding protein Chain: A: PDB Molecule:gm27569p; PDBTitle: crystal structure of drosophila melanogaster translin2 protein 94 c2ks1B_ not modelled 8.2 21 PDB header:transferase Chain: B: PDB Molecule:epidermal growth factor receptor; PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation 95 c3fxeA_ not modelled 8.2 46 PDB header:unknown function Chain: A: PDB Molecule:protein icmq; PDBTitle: crystal structure of interacting domains of icmr and icmq (seleno-2 derivative) 96 d1pzxa_ not modelled 8.2 7 Fold:DAK1/DegV-like Superfamily:DAK1/DegV-like Family:DegV-like 97 c1wyyB_ not modelled 8.2 16 PDB header:viral protein Chain: B: PDB Molecule:e2 glycoprotein; PDBTitle: post-fusion hairpin conformation of the sars coronavirus spike2 glycoprotein 98 c1wdfA_ not modelled 8.2 13 PDB header:viral protein Chain: A: PDB Molecule:e2 glycoprotein; PDBTitle: crystal structure of mhv spike protein fusion core 99 d2b0ha1 not modelled 8.2 11 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:VBS domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0