Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	M	D	L	D	N	I	P	D	T	Q	T	E	A	E	E	L	E	E	V	V	M	G	L	I	I	N	S	G	Q	A	R	S	L	A	Y	A	A	L	K	Q	A	K	Q	G	D	F	A	A	A	K	A	M	M	D	Q	S	R	M	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?		?	?	?	?																																?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Sequence		L	N	E	A	H	L	V	Q	T	K	L	I	E	G	D	A	G	E	G	K	M	K	V	S	L	V	L	V	H	A	Q	D	H	L	M	T	S	M	L	A	R	E	L	I	T	E	L	I	E	L	H	E	K	L	K	A
Secondary structure
SS confidence
Disorder																		?		?	?	?																																	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1wcr chain A Region: 14 - 116 Aligned: 103 Modelled: 103 Confidence: 100.0% Identity: 99% PDB header:transferase Chain: A: PDB Molecule:pts system, n, n'-diacetylchitobiose-specific PDBTitle: trimeric structure of the enzyme iia from escherichia coli2 phosphotransferase system specific for n,n'-3 diacetylchitobiose Phyre2 PDB 2e2a chain A Region: 12 - 113 Aligned: 102 Modelled: 102 Confidence: 100.0% Identity: 33% Fold: Spectrin repeat-like Superfamily: Enzyme IIa from lactose specific PTS, IIa-lac Family: Enzyme IIa from lactose specific PTS, IIa-lac Phyre2 PDB 3l8r chain A Region: 12 - 113 Aligned: 102 Modelled: 102 Confidence: 100.0% Identity: 35% PDB header:transferase Chain: A: PDB Molecule:putative pts system, cellobiose-specific iia PDBTitle: the crystal structure of ptca from s. mutans Phyre2 PDB 3k1s chain E Region: 16 - 116 Aligned: 101 Modelled: 101 Confidence: 100.0% Identity: 45% PDB header:transferase Chain: E: PDB Molecule:pts system, cellobiose-specific iia component; PDBTitle: crystal structure of the pts cellobiose specific enzyme iia2 from bacillus anthracis Phyre2 PDB 2w2u chain A Region: 30 - 63 Aligned: 34 Modelled: 34 Confidence: 60.5% Identity: 26% PDB header:hydrolase/transport Chain: A: PDB Molecule:hypothetical p60 katanin; PDBTitle: structural insight into the interaction between archaeal2 escrt-iii and aaa-atpase Phyre2 PDB 2jq9 chain A domain 1 Region: 30 - 64 Aligned: 35 Modelled: 35 Confidence: 50.2% Identity: 17% Fold: Spectrin repeat-like Superfamily: MIT domain Family: MIT domain Phyre2 PDB 1wr0 chain A domain 1 Region: 30 - 64 Aligned: 35 Modelled: 35 Confidence: 49.1% Identity: 20% Fold: Spectrin repeat-like Superfamily: MIT domain Family: MIT domain Phyre2 PDB 2cpt chain A domain 1 Region: 27 - 64 Aligned: 38 Modelled: 38 Confidence: 46.2% Identity: 21% Fold: Spectrin repeat-like Superfamily: MIT domain Family: MIT domain Phyre2 PDB 2v6x chain A Region: 27 - 67 Aligned: 41 Modelled: 41 Confidence: 43.1% Identity: 12% PDB header:protein transport Chain: A: PDB Molecule:vacuolar protein sorting-associated protein 4; PDBTitle: stractural insight into the interaction between escrt-iii2 and vps4 Phyre2 PDB 2v6y chain A Region: 30 - 63 Aligned: 34 Modelled: 34 Confidence: 43.0% Identity: 26% PDB header:hydrolase Chain: A: PDB Molecule:aaa family atpase, p60 katanin; PDBTitle: structure of the mit domain from a s. solfataricus vps4-2 like atpase Phyre2 PDB 1wfd chain A Region: 31 - 66 Aligned: 36 Modelled: 36 Confidence: 39.4% Identity: 11% Fold: Spectrin repeat-like Superfamily: MIT domain Family: MIT domain Phyre2 PDB 3zxp chain C Region: 30 - 84 Aligned: 55 Modelled: 55 Confidence: 34.1% Identity: 13% PDB header:protein transport Chain: C: PDB Molecule:bro1 domain-containing protein brox; PDBTitle: structural and functional analyses of the bro1 domain protein brox Phyre2 PDB 2hr2 chain A domain 1 Region: 28 - 57 Aligned: 30 Modelled: 30 Confidence: 32.2% Identity: 20% Fold: alpha-alpha superhelix Superfamily: TPR-like Family: CT2138-like Phyre2 PDB 3bu8 chain B Region: 34 - 115 Aligned: 82 Modelled: 82 Confidence: 26.9% Identity: 16% PDB header:dna binding protein Chain: B: PDB Molecule:telomeric repeat-binding factor 2; PDBTitle: crystal structure of trf2 trfh domain and tin2 peptide2 complex Phyre2 PDB 2crb chain A domain 1 Region: 31 - 64 Aligned: 34 Modelled: 34 Confidence: 26.6% Identity: 21% Fold: Spectrin repeat-like Superfamily: MIT domain-like Family: MIT domain Phyre2 PDB 1hh8 chain A Region: 29 - 57 Aligned: 29 Modelled: 29 Confidence: 26.3% Identity: 21% Fold: alpha-alpha superhelix Superfamily: TPR-like Family: Tetratricopeptide repeat (TPR) Phyre2 PDB 2xev chain B Region: 31 - 57 Aligned: 27 Modelled: 27 Confidence: 24.6% Identity: 22% PDB header:metal binding Chain: B: PDB Molecule:ybgf; PDBTitle: crystal structure of the tpr domain of xanthomonas2 campestris ybgf Phyre2 PDB 1hxi chain A Region: 29 - 57 Aligned: 29 Modelled: 28 Confidence: 21.8% Identity: 14% Fold: alpha-alpha superhelix Superfamily: TPR-like Family: Tetratricopeptide repeat (TPR) Phyre2 PDB 1xof chain A Region: 46 - 57 Aligned: 12 Modelled: 12 Confidence: 21.2% Identity: 25% PDB header:de novo protein Chain: A: PDB Molecule:bbahett1; PDBTitle: heterooligomeric beta beta alpha miniprotein Phyre2 PDB 2gy9 chain T domain 1 Region: 32 - 64 Aligned: 33 Modelled: 33 Confidence: 20.3% Identity: 18% Fold: Spectrin repeat-like Superfamily: Ribosomal protein S20 Family: Ribosomal protein S20 Phyre2 1 c1wcrA_ 2 d2e2aa_ 3 c3l8rA_ 4 c3k1sE_ 5 c2w2uA_ 6 d2jq9a1 7 d1wr0a1 8 d2cpta1 9 c2v6xA_ 10 c2v6yA_ 11 d1wfda_ 12 c3zxpC_ 13 d2hr2a1 14 c3bu8B_ 15 d2crba1 16 d1hh8a_ 17 c2xevB_ 18 d1hxia_ 19 c1xofA_ 20 d2gy9t1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1wcrA_ 100.0 99 PDB header:transferase Chain: A: PDB Molecule:pts system, n, n'-diacetylchitobiose-specific PDBTitle: trimeric structure of the enzyme iia from escherichia coli2 phosphotransferase system specific for n,n'-3 diacetylchitobiose 2 d2e2aa_ 100.0 33 Fold:Spectrin repeat-like Superfamily:Enzyme IIa from lactose specific PTS, IIa-lac Family:Enzyme IIa from lactose specific PTS, IIa-lac 3 c3l8rA_ 100.0 35 PDB header:transferase Chain: A: PDB Molecule:putative pts system, cellobiose-specific iia PDBTitle: the crystal structure of ptca from s. mutans 4 c3k1sE_ 100.0 45 PDB header:transferase Chain: E: PDB Molecule:pts system, cellobiose-specific iia component; PDBTitle: crystal structure of the pts cellobiose specific enzyme iia2 from bacillus anthracis 5 c2w2uA_ 60.5 26 PDB header:hydrolase/transport Chain: A: PDB Molecule:hypothetical p60 katanin; PDBTitle: structural insight into the interaction between archaeal2 escrt-iii and aaa-atpase 6 d2jq9a1 50.2 17 Fold:Spectrin repeat-like Superfamily:MIT domain Family:MIT domain 7 d1wr0a1 49.1 20 Fold:Spectrin repeat-like Superfamily:MIT domain Family:MIT domain 8 d2cpta1 46.2 21 Fold:Spectrin repeat-like Superfamily:MIT domain Family:MIT domain 9 c2v6xA_ 43.1 12 PDB header:protein transport Chain: A: PDB Molecule:vacuolar protein sorting-associated protein 4; PDBTitle: stractural insight into the interaction between escrt-iii2 and vps4 10 c2v6yA_ 43.0 26 PDB header:hydrolase Chain: A: PDB Molecule:aaa family atpase, p60 katanin; PDBTitle: structure of the mit domain from a s. solfataricus vps4-2 like atpase 11 d1wfda_ 39.4 11 Fold:Spectrin repeat-like Superfamily:MIT domain Family:MIT domain 12 c3zxpC_ 34.1 13 PDB header:protein transport Chain: C: PDB Molecule:bro1 domain-containing protein brox; PDBTitle: structural and functional analyses of the bro1 domain protein brox 13 d2hr2a1 32.2 20 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:CT2138-like 14 c3bu8B_ 26.9 16 PDB header:dna binding protein Chain: B: PDB Molecule:telomeric repeat-binding factor 2; PDBTitle: crystal structure of trf2 trfh domain and tin2 peptide2 complex 15 d2crba1 26.6 21 Fold:Spectrin repeat-like Superfamily:MIT domain-like Family:MIT domain 16 d1hh8a_ 26.3 21 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 17 c2xevB_ 24.6 22 PDB header:metal binding Chain: B: PDB Molecule:ybgf; PDBTitle: crystal structure of the tpr domain of xanthomonas2 campestris ybgf 18 d1hxia_ 21.8 14 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 19 c1xofA_ 21.2 25 PDB header:de novo protein Chain: A: PDB Molecule:bbahett1; PDBTitle: heterooligomeric beta beta alpha miniprotein 20 d2gy9t1 20.3 18 Fold:Spectrin repeat-like Superfamily:Ribosomal protein S20 Family:Ribosomal protein S20 21 d2c2la1 not modelled 17.7 17 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 22 c3r9mA_ not modelled 17.5 13 PDB header:protein binding Chain: A: PDB Molecule:bro1 domain-containing protein brox; PDBTitle: crystal structure of the brox bro1 domain 23 c2avpA_ not modelled 17.2 22 PDB header:de novo protein Chain: A: PDB Molecule:synthetic consensus tpr protein; PDBTitle: crystal structure of an 8 repeat consensus tpr superhelix 24 d2uubt1 not modelled 17.1 21 Fold:Spectrin repeat-like Superfamily:Ribosomal protein S20 Family:Ribosomal protein S20 25 d1elwa_ not modelled 16.1 18 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 26 c2xcbA_ not modelled 14.1 14 PDB header:protein binding Chain: A: PDB Molecule:regulatory protein pcrh; PDBTitle: crystal structure of pcrh in complex with the chaperone2 binding region of popd 27 c2hyzA_ not modelled 14.0 22 PDB header:de novo protein Chain: A: PDB Molecule:synthetic consensus tpr protein; PDBTitle: crystal structure of an 8 repeat consensus tpr superhelix2 (orthorombic crystal form) 28 c1na3A_ not modelled 13.7 21 PDB header:de novo protein Chain: A: PDB Molecule:designed protein ctpr2; PDBTitle: design of stable alpha-helical arrays from an idealized tpr2 motif 29 d2buga1 not modelled 13.4 26 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 30 c2j7aE_ not modelled 13.2 20 PDB header:oxidoreductase Chain: E: PDB Molecule:cytochrome c nitrite reductase nrfa; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris 31 c1sfcJ_ not modelled 12.6 12 PDB header:transport protein Chain: J: PDB Molecule:protein (syntaxin 1a); PDBTitle: neuronal synaptic fusion complex 32 d1qhla_ not modelled 12.4 30 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 33 c2ae3A_ not modelled 12.2 11 PDB header:hydrolase Chain: A: PDB Molecule:glutaryl 7-aminocephalosporanic acid acylase; PDBTitle: glutaryl 7-aminocephalosporanic acid acylase: mutational study of2 activation mechanism 34 c2c2lD_ not modelled 12.1 17 PDB header:chaperone Chain: D: PDB Molecule:carboxy terminus of hsp70-interacting protein; PDBTitle: crystal structure of the chip u-box e3 ubiquitin ligase 35 c2q00B_ not modelled 12.0 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:orf c02003 protein; PDBTitle: crystal structure of the p95883_sulso protein from2 sulfolobus solfataricus. nesg target ssr10. 36 d1tjca_ not modelled 11.9 14 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 37 c3dzaB_ not modelled 11.8 13 PDB header:unknown function Chain: B: PDB Molecule:uncharacterized putative membrane protein; PDBTitle: crystal structure of a putative membrane protein of unknown function2 (yfdx) from klebsiella pneumoniae subsp. at 1.65 a resolution 38 d1wiva_ not modelled 11.5 23 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 39 c2vyiA_ not modelled 11.4 26 PDB header:chaperone Chain: A: PDB Molecule:sgta protein; PDBTitle: crystal structure of the tpr domain of human sgt 40 c3sz7A_ not modelled 11.1 11 PDB header:chaperone regulator Chain: A: PDB Molecule:hsc70 cochaperone (sgt); PDBTitle: crystal structure of the sgt2 tpr domain from aspergillus fumigatus 41 d1ndba2 not modelled 10.9 17 Fold:CoA-dependent acyltransferases Superfamily:CoA-dependent acyltransferases Family:Choline/Carnitine O-acyltransferase 42 c3ipdB_ not modelled 10.6 15 PDB header:exocytosis Chain: B: PDB Molecule:syntaxin-1a; PDBTitle: helical extension of the neuronal snare complex into the2 membrane, spacegroup i 21 21 21 43 c1gk9A_ not modelled 10.6 37 PDB header:antibiotic resistance Chain: A: PDB Molecule:penicillin g acylase alpha subunit; PDBTitle: crystal structures of penicillin acylase enzyme-substrate2 complexes: structural insights into the catalytic mechanism 44 d2pqrb1 not modelled 10.4 29 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 45 c3ct5A_ not modelled 10.2 15 PDB header:hydrolase Chain: A: PDB Molecule:morphogenesis protein 1; PDBTitle: crystal and cryoem structural studies of a cell wall degrading enzyme2 in the bacteriophage phi29 tail 46 c3oxgA_ not modelled 9.9 19 PDB header:transferase Chain: A: PDB Molecule:set and mynd domain-containing protein 3; PDBTitle: human lysine methyltransferase smyd3 in complex with adohcy (form iii) 47 c3q49B_ not modelled 9.6 14 PDB header:ligase/chaperone Chain: B: PDB Molecule:stip1 homology and u box-containing protein 1; PDBTitle: crystal structure of the tpr domain of chip complexed with hsp70-c2 peptide 48 c1ajnA_ not modelled 9.3 37 PDB header:antibiotic resistance Chain: A: PDB Molecule:penicillin amidohydrolase; PDBTitle: penicillin acylase complexed with p-nitrophenylacetic acid 49 c2npsB_ not modelled 9.3 12 PDB header:transport protein Chain: B: PDB Molecule:syntaxin 13; PDBTitle: crystal structure of the early endosomal snare complex 50 d1xl7a2 not modelled 9.2 15 Fold:CoA-dependent acyltransferases Superfamily:CoA-dependent acyltransferases Family:Choline/Carnitine O-acyltransferase 51 c1cp9A_ not modelled 8.7 26 PDB header:hydrolase Chain: A: PDB Molecule:penicillin amidohydrolase; PDBTitle: crystal structure of penicillin g acylase from the bro12 mutant strain of providencia rettgeri 52 c3k3wA_ not modelled 8.6 32 PDB header:hydrolase Chain: A: PDB Molecule:penicillin g acylase; PDBTitle: thermostable penicillin g acylase from alcaligence faecalis2 in orthorhombic form 53 d1a17a_ not modelled 8.5 26 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 54 c2kckA_ not modelled 8.3 7 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:tpr repeat; PDBTitle: nmr solution structure of the northeast structural genomics2 consortium (nesg) target mrr121a 55 d2joka1 not modelled 8.2 23 Fold:SopE-like GEF domain Superfamily:SopE-like GEF domain Family:SopE-like GEF domain 56 c2if4A_ not modelled 8.0 14 PDB header:signaling protein Chain: A: PDB Molecule:atfkbp42; PDBTitle: crystal structure of a multi-domain immunophilin from2 arabidopsis thaliana 57 d1xb2b1 not modelled 7.9 20 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 58 c2vr0A_ not modelled 7.8 20 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c nitrite reductase, catalytic subunit nfra; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex bound to the hqno inhibitor 59 c3qkyA_ not modelled 7.4 13 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane assembly lipoprotein yfio; PDBTitle: crystal structure of rhodothermus marinus bamd 60 c3ceqB_ not modelled 7.4 19 PDB header:motor protein, transport protein Chain: B: PDB Molecule:kinesin light chain 2; PDBTitle: the tpr domain of human kinesin light chain 2 (hklc2) 61 d2choa1 not modelled 7.3 7 Fold:Hyaluronidase domain-like Superfamily:Hyaluronidase post-catalytic domain-like Family:Hyaluronidase post-catalytic domain-like 62 c1n7sB_ not modelled 7.2 9 PDB header:transport protein Chain: B: PDB Molecule:syntaxin 1a; PDBTitle: high resolution structure of a truncated neuronal snare2 complex 63 d2bcgg2 not modelled 7.1 0 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:GDI-like N domain 64 c2r5sB_ not modelled 7.0 21 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein vp0806; PDBTitle: the crystal structure of a domain of protein vp0806 (unknown function)2 from vibrio parahaemolyticus rimd 2210633 65 c3b5nF_ not modelled 7.0 13 PDB header:membrane protein Chain: F: PDB Molecule:protein sso1; PDBTitle: structure of the yeast plasma membrane snare complex 66 d1aipc1 not modelled 6.9 22 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 67 c2wybA_ not modelled 6.9 11 PDB header:hydrolase Chain: A: PDB Molecule:acyl-homoserine lactone acylase pvdq subunit PDBTitle: the quorum quenching n-acyl homoserine lactone acylase pvdq2 with a covalently bound dodecanoic acid 68 d2cbia1 not modelled 6.6 14 Fold:Hyaluronidase domain-like Superfamily:Hyaluronidase post-catalytic domain-like Family:Hyaluronidase post-catalytic domain-like 69 d1p5qa1 not modelled 6.4 14 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 70 c1kt0A_ not modelled 6.2 17 PDB header:isomerase Chain: A: PDB Molecule:51 kda fk506-binding protein; PDBTitle: structure of the large fkbp-like protein, fkbp51, involved in steroid2 receptor complexes 71 c2r0bA_ not modelled 6.1 24 PDB header:hydrolase Chain: A: PDB Molecule:serine/threonine/tyrosine-interacting protein; PDBTitle: crystal structure of human tyrosine phosphatase-like2 serine/threonine/tyrosine-interacting protein 72 c3rauB_ not modelled 6.1 21 PDB header:hydrolase Chain: B: PDB Molecule:tyrosine-protein phosphatase non-receptor type 23; PDBTitle: crystal structure of the hd-ptp bro1 domain 73 d1vh6a_ not modelled 5.9 9 Fold:Four-helical up-and-down bundle Superfamily:Flagellar export chaperone FliS Family:Flagellar export chaperone FliS 74 c1vh6A_ not modelled 5.9 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:flagellar protein flis; PDBTitle: crystal structure of a flagellar protein 75 d1iqpa1 not modelled 5.7 17 Fold:post-AAA+ oligomerization domain-like Superfamily:post-AAA+ oligomerization domain-like Family:DNA polymerase III clamp loader subunits, C-terminal domain 76 d2ivxa2 not modelled 5.7 37 Fold:Cyclin-like Superfamily:Cyclin-like Family:Cyclin 77 c1ii8A_ not modelled 5.6 17 PDB header:replication Chain: A: PDB Molecule:rad50 abc-atpase; PDBTitle: crystal structure of the p. furiosus rad50 atpase domain 78 c1efuB_ not modelled 5.6 30 PDB header:complex (two elongation factors) Chain: B: PDB Molecule:elongation factor ts; PDBTitle: elongation factor complex ef-tu/ef-ts from escherichia coli 79 d3blhb1 not modelled 5.6 42 Fold:Cyclin-like Superfamily:Cyclin-like Family:Cyclin 80 d256ba_ not modelled 5.5 29 Fold:Four-helical up-and-down bundle Superfamily:Cytochromes Family:Cytochrome b562 81 c3kvhA_ not modelled 5.4 14 PDB header:rna binding protein Chain: A: PDB Molecule:protein syndesmos; PDBTitle: crystal structure of human protein syndesmos (nudt16-like protein) 82 d2cp9a1 not modelled 5.4 24 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 83 c1xexA_ not modelled 5.4 21 PDB header:cell cycle Chain: A: PDB Molecule:smc protein; PDBTitle: structural biochemistry of atp-driven dimerization and dna2 stimulated activation of smc atpases. 84 c1ycsB_ not modelled 5.3 16 PDB header:complex (anti-oncogene/ankyrin repeats) Chain: B: PDB Molecule:53bp2; PDBTitle: p53-53bp2 complex 85 d2idga1 not modelled 5.2 10 Fold:TorD-like Superfamily:TorD-like Family:TorD-like 86 c2oudA_ not modelled 5.2 16 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity protein phosphatase 10; PDBTitle: crystal structure of the catalytic domain of human mkp5 87 c2kc7A_ not modelled 5.2 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:bfr218_protein; PDBTitle: solution nmr structure of bacteroides fragilis protein2 bf1650. northeast structural genomics consortium target3 bfr218 88 c3gyzB_ not modelled 5.1 14 PDB header:chaperone Chain: B: PDB Molecule:chaperone protein ipgc; PDBTitle: crystal structure of ipgc from shigella flexneri

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0