Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	M	S	Q	P	A	K	V	L	L	L	Y	A	H	P	E	S	Q	D	S	V	A	N	R	V	L	L	K	P	A	T	Q	L	S	N	V	T	V	H	D	L	Y	A	H	Y	P	D	F	F	I	D	I	P	R	E	Q	A	L	L	R
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	H	E	V	I	V	F	Q	H	P	L	Y	T	Y	S	C	P	A	L	L	K	E	W	L	D	R	V	L	S	R	G	F	A	S	G	P	G	G	N	Q	L	A	G	K	Y	W	R	S	V	I	T	T	G	E	P	E	S	A	Y	R
Secondary structure
SS confidence
Disorder																																					?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		Y	D	A	L	N	R	Y	P	M	S	D	V	L	R	P	F	E	L	A	A	G	M	C	R	M	H	W	L	S	P	I	I	I	Y	W	A	R	R	Q	S	A	Q	E	L	A	S	H	A	R	A	Y	G	D	W	L	A	N	P	L	S
Secondary structure
SS confidence
Disorder		?	?	?																																																							?	?	?
Disorder confidence
		.	.	.	.
Sequence		P	G	G	R
Secondary structure
SS confidence
Disorder		?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3eyw chain A Region: 2 - 177 Aligned: 174 Modelled: 176 Confidence: 100.0% Identity: 37% PDB header:transport protein Chain: A: PDB Molecule:c-terminal domain of glutathione-regulated potassium-efflux PDBTitle: crystal structure of the c-terminal domain of e. coli kefc in complex2 with keff Phyre2 PDB 1d4a chain A Region: 5 - 181 Aligned: 176 Modelled: 177 Confidence: 100.0% Identity: 27% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Quinone reductase Phyre2 PDB 1qrd chain A Region: 5 - 181 Aligned: 176 Modelled: 177 Confidence: 100.0% Identity: 27% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Quinone reductase Phyre2 PDB 3ha2 chain B Region: 6 - 177 Aligned: 166 Modelled: 171 Confidence: 100.0% Identity: 32% PDB header:oxidoreductase Chain: B: PDB Molecule:nadph-quinone reductase; PDBTitle: crystal structure of protein (nadph-quinone reductase) from2 p.pentosaceus, northeast structural genomics consortium target ptr24a Phyre2 PDB 1dxq chain A Region: 5 - 181 Aligned: 176 Modelled: 177 Confidence: 100.0% Identity: 26% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Quinone reductase Phyre2 PDB 3f2v chain A Region: 6 - 178 Aligned: 172 Modelled: 173 Confidence: 100.0% Identity: 37% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:general stress protein 14; PDBTitle: crystal structure of the general stress protein 142 (tde0354) in complex with fmn from treponema denticola,3 northeast structural genomics consortium target tdr58. Phyre2 PDB 2amj chain D Region: 4 - 177 Aligned: 165 Modelled: 174 Confidence: 100.0% Identity: 16% PDB header:oxidoreductase Chain: D: PDB Molecule:modulator of drug activity b; PDBTitle: crystal structure of modulator of drug activity b from escherichia2 coli o157:h7 Phyre2 PDB 3rpe chain A Region: 5 - 181 Aligned: 175 Modelled: 177 Confidence: 100.0% Identity: 24% PDB header:oxidoreductase Chain: A: PDB Molecule:modulator of drug activity b; PDBTitle: 1.1 angstrom crystal structure of putative modulator of drug activity2 (mdab) from yersinia pestis co92. Phyre2 PDB 2qwx chain A domain 1 Region: 6 - 182 Aligned: 176 Modelled: 177 Confidence: 100.0% Identity: 35% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Quinone reductase Phyre2 PDB 3lcm chain B Region: 6 - 177 Aligned: 166 Modelled: 172 Confidence: 100.0% Identity: 20% PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of smu.1420 from streptococcus mutans ua159 Phyre2 PDB 3p0r chain A Region: 6 - 177 Aligned: 167 Modelled: 172 Confidence: 100.0% Identity: 17% PDB header:oxidoreductase Chain: A: PDB Molecule:azoreductase; PDBTitle: crystal structure of azoreductase from bacillus anthracis str. sterne Phyre2 PDB 2hpv chain A Region: 6 - 178 Aligned: 163 Modelled: 173 Confidence: 100.0% Identity: 18% PDB header:oxidoreductase Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase; PDBTitle: crystal structure of fmn-dependent azoreductase from enterococcus2 faecalis Phyre2 PDB 1t5b chain A Region: 5 - 181 Aligned: 168 Modelled: 177 Confidence: 100.0% Identity: 19% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Quinone reductase Phyre2 PDB 2v9c chain A Region: 6 - 173 Aligned: 165 Modelled: 168 Confidence: 100.0% Identity: 18% PDB header:oxidoreductase Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase 1; PDBTitle: x-ray crystallographic structure of a pseudomonas2 aeruginosa azoreductase in complex with methyl red. Phyre2 PDB 2z98 chain A domain 1 Region: 6 - 181 Aligned: 167 Modelled: 168 Confidence: 100.0% Identity: 20% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Quinone reductase Phyre2 PDB 1rli chain A Region: 7 - 177 Aligned: 151 Modelled: 162 Confidence: 100.0% Identity: 16% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Hypothetical protein YwqN Phyre2 PDB 1rtt chain A Region: 6 - 176 Aligned: 154 Modelled: 171 Confidence: 99.9% Identity: 19% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: NADPH-dependent FMN reductase Phyre2 PDB 1sqs chain A Region: 5 - 178 Aligned: 157 Modelled: 161 Confidence: 99.9% Identity: 15% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Hypothetical protein SP1951 Phyre2 PDB 3fvw chain A Region: 6 - 177 Aligned: 157 Modelled: 157 Confidence: 99.9% Identity: 16% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative nad(p)h-dependent fmn reductase; PDBTitle: crystal structure of the q8dwd8_strmu protein from2 streptococcus mutans. northeast structural genomics3 consortium target smr99. Phyre2 PDB 1nni chain 1 Region: 8 - 177 Aligned: 148 Modelled: 166 Confidence: 99.9% Identity: 16% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: NADPH-dependent FMN reductase Phyre2 1 c3eywA_ 2 d1d4aa_ 3 d1qrda_ 4 c3ha2B_ 5 d1dxqa_ 6 c3f2vA_ 7 c2amjD_ 8 c3rpeA_ 9 d2qwxa1 10 c3lcmB_ 11 c3p0rA_ 12 c2hpvA_ 13 d1t5ba_ 14 c2v9cA_ 15 d2z98a1 16 d1rlia_ 17 d1rtta_ 18 d1sqsa_ 19 c3fvwA_ 20 d1nni1_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3eywA_ 100.0 37 PDB header:transport protein Chain: A: PDB Molecule:c-terminal domain of glutathione-regulated potassium-efflux PDBTitle: crystal structure of the c-terminal domain of e. coli kefc in complex2 with keff 2 d1d4aa_ 100.0 27 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 3 d1qrda_ 100.0 27 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 4 c3ha2B_ 100.0 32 PDB header:oxidoreductase Chain: B: PDB Molecule:nadph-quinone reductase; PDBTitle: crystal structure of protein (nadph-quinone reductase) from2 p.pentosaceus, northeast structural genomics consortium target ptr24a 5 d1dxqa_ 100.0 26 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 6 c3f2vA_ 100.0 37 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:general stress protein 14; PDBTitle: crystal structure of the general stress protein 142 (tde0354) in complex with fmn from treponema denticola,3 northeast structural genomics consortium target tdr58. 7 c2amjD_ 100.0 16 PDB header:oxidoreductase Chain: D: PDB Molecule:modulator of drug activity b; PDBTitle: crystal structure of modulator of drug activity b from escherichia2 coli o157:h7 8 c3rpeA_ 100.0 24 PDB header:oxidoreductase Chain: A: PDB Molecule:modulator of drug activity b; PDBTitle: 1.1 angstrom crystal structure of putative modulator of drug activity2 (mdab) from yersinia pestis co92. 9 d2qwxa1 100.0 35 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 10 c3lcmB_ 100.0 20 PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of smu.1420 from streptococcus mutans ua159 11 c3p0rA_ 100.0 17 PDB header:oxidoreductase Chain: A: PDB Molecule:azoreductase; PDBTitle: crystal structure of azoreductase from bacillus anthracis str. sterne 12 c2hpvA_ 100.0 18 PDB header:oxidoreductase Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase; PDBTitle: crystal structure of fmn-dependent azoreductase from enterococcus2 faecalis 13 d1t5ba_ 100.0 19 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 14 c2v9cA_ 100.0 18 PDB header:oxidoreductase Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase 1; PDBTitle: x-ray crystallographic structure of a pseudomonas2 aeruginosa azoreductase in complex with methyl red. 15 d2z98a1 100.0 20 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 16 d1rlia_ 100.0 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Hypothetical protein YwqN 17 d1rtta_ 99.9 19 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 18 d1sqsa_ 99.9 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Hypothetical protein SP1951 19 c3fvwA_ 99.9 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative nad(p)h-dependent fmn reductase; PDBTitle: crystal structure of the q8dwd8_strmu protein from2 streptococcus mutans. northeast structural genomics3 consortium target smr99. 20 d1nni1_ 99.9 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 21 c2q62A_ not modelled 99.9 16 PDB header:flavoprotein Chain: A: PDB Molecule:arsh; PDBTitle: crystal structure of arsh from sinorhizobium meliloti 22 d1ydga_ not modelled 99.9 14 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 23 d1t0ia_ not modelled 99.9 18 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 24 c3k1yE_ not modelled 99.9 14 PDB header:oxidoreductase Chain: E: PDB Molecule:oxidoreductase; PDBTitle: x-ray structure of oxidoreductase from corynebacterium2 diphtheriae. orthorombic crystal form, northeast structural3 genomics consortium target cdr100d 25 c2vzhA_ not modelled 99.9 17 PDB header:oxidoreductase Chain: A: PDB Molecule:nadh-dependent fmn reductase; PDBTitle: structures of nadh:fmn oxidoreductase (emob)-fmn complex 26 c3b6iB_ not modelled 99.8 20 PDB header:flavoprotein Chain: B: PDB Molecule:flavoprotein wrba; PDBTitle: wrba from escherichia coli, native structure 27 c2zkiH_ not modelled 99.8 15 PDB header:transcription Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872) 28 d2a5la1 not modelled 99.8 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 29 c2fzvC_ not modelled 99.8 18 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:putative arsenical resistance protein; PDBTitle: crystal structure of an apo form of a flavin-binding protein from2 shigella flexneri 30 d2fzva1 not modelled 99.8 18 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 31 c3d7nA_ not modelled 99.8 18 PDB header:electron transport Chain: A: PDB Molecule:flavodoxin, wrba-like protein; PDBTitle: the crystal structure of the flavodoxin, wrba-like protein from2 agrobacterium tumefaciens 32 d1e5da1 not modelled 99.8 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 33 d1ycga1 not modelled 99.7 14 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 34 c1ychD_ not modelled 99.7 12 PDB header:oxidoreductase Chain: D: PDB Molecule:nitric oxide reductase; PDBTitle: x-ray crystal structures of moorella thermoacetica fpra.2 novel diiron site structure and mechanistic insights into3 a scavenging nitric oxide reductase 35 d2arka1 not modelled 99.7 13 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 36 c2ohiB_ not modelled 99.6 14 PDB header:oxidoreductase Chain: B: PDB Molecule:type a flavoprotein fpra; PDBTitle: crystal structure of coenzyme f420h2 oxidase (fpra), a diiron2 flavoprotein, reduced state 37 d1vmea1 not modelled 99.6 14 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 38 c2q9uB_ not modelled 99.6 14 PDB header:oxidoreductase Chain: B: PDB Molecule:a-type flavoprotein; PDBTitle: crystal structure of the flavodiiron protein from giardia2 intestinalis 39 c3klbA_ not modelled 99.5 16 PDB header:flavoprotein Chain: A: PDB Molecule:putative flavoprotein; PDBTitle: crystal structure of putative flavoprotein in complex with fmn2 (yp_213683.1) from bacteroides fragilis nctc 9343 at 1.75 a3 resolution 40 c1e5dA_ not modelled 99.4 13 PDB header:oxidoreductase Chain: A: PDB Molecule:rubredoxin\:oxygen oxidoreductase; PDBTitle: rubredoxin oxygen:oxidoreductase (roo) from anaerobe2 desulfovibrio gigas 41 c3edoA_ not modelled 99.4 13 PDB header:flavoprotein Chain: A: PDB Molecule:putative trp repressor binding protein; PDBTitle: crystal structure of flavoprotein in complex with fmn2 (yp_193882.1) from lactobacillus acidophilus ncfm at 1.203 a resolution 42 c3fniA_ not modelled 99.3 16 PDB header:oxidoreductase Chain: A: PDB Molecule:putative diflavin flavoprotein a 3; PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a 43 c1vmeB_ not modelled 99.3 14 PDB header:electron transport Chain: B: PDB Molecule:flavoprotein; PDBTitle: crystal structure of flavoprotein (tm0755) from thermotoga maritima at2 1.80 a resolution 44 c3hlyA_ not modelled 99.3 16 PDB header:flavoprotein Chain: A: PDB Molecule:flavodoxin-like domain; PDBTitle: crystal structure of the flavodoxin-like domain from2 synechococcus sp q5mzp6_synp6 protein. northeast structural3 genomics consortium target snr135d. 45 c3f6sI_ not modelled 98.9 14 PDB header:electron transport Chain: I: PDB Molecule:flavodoxin; PDBTitle: desulfovibrio desulfuricans (atcc 29577) oxidized flavodoxin2 alternate conformers 46 d2fz5a1 not modelled 98.9 11 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 47 d5nula_ not modelled 98.9 11 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 48 c2wc1A_ not modelled 98.7 11 PDB header:electron transport Chain: A: PDB Molecule:flavodoxin; PDBTitle: three-dimensional structure of the nitrogen fixation2 flavodoxin (niff) from rhodobacter capsulatus at 2.2 a 49 d1tlla2 not modelled 98.6 7 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 50 d1ag9a_ not modelled 98.6 13 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 51 c3hr4C_ not modelled 98.6 10 PDB header:oxidoreductase/metal binding protein Chain: C: PDB Molecule:nitric oxide synthase, inducible; PDBTitle: human inos reductase and calmodulin complex 52 d1czna_ not modelled 98.5 12 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 53 d1f4pa_ not modelled 98.4 7 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 54 d1bvyf_ not modelled 98.4 13 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 55 c1bvyF_ not modelled 98.4 13 PDB header:oxidoreductase Chain: F: PDB Molecule:protein (cytochrome p450 bm-3); PDBTitle: complex of the heme and fmn-binding domains of the2 cytochrome p450(bm-3) 56 d1oboa_ not modelled 98.4 11 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 57 d1b1ca_ not modelled 98.4 8 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 58 d1ykga1 not modelled 98.2 8 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 59 d1yoba1 not modelled 98.2 11 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 60 c2hnbA_ not modelled 98.1 8 PDB header:electron transport Chain: A: PDB Molecule:protein mioc; PDBTitle: solution structure of a bacterial holo-flavodoxin 61 d1ja1a2 not modelled 98.1 8 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 62 c1tllA_ not modelled 98.0 7 PDB header:oxidoreductase Chain: A: PDB Molecule:nitric-oxide synthase, brain; PDBTitle: crystal structure of rat neuronal nitric-oxide synthase2 reductase module at 2.3 a resolution. 63 d1fuea_ not modelled 98.0 11 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 64 d2fcra_ not modelled 97.7 9 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 65 c1j9zB_ not modelled 96.6 8 PDB header:oxidoreductase Chain: B: PDB Molecule:nadph-cytochrome p450 reductase; PDBTitle: cypor-w677g 66 c2bpoA_ not modelled 96.5 12 PDB header:reductase Chain: A: PDB Molecule:nadph-cytochrom p450 reductase; PDBTitle: crystal structure of the yeast cpr triple mutant: d74g,2 y75f, k78a. 67 c1q7tA_ not modelled 93.5 20 PDB header:hydrolase Chain: A: PDB Molecule:hypothetical protein rv1170; PDBTitle: rv1170 (mshb) from mycobacterium tuberculosis 68 d1uana_ not modelled 93.4 12 Fold:LmbE-like Superfamily:LmbE-like Family:LmbE-like 69 d1q74a_ not modelled 93.4 16 Fold:LmbE-like Superfamily:LmbE-like Family:LmbE-like 70 c3dfmA_ not modelled 89.1 19 PDB header:hydrolase Chain: A: PDB Molecule:teicoplanin pseudoaglycone deacetylase orf2; PDBTitle: the crystal structure of the zinc inhibited form of2 teicoplanin deacetylase orf2 71 c3dfiA_ not modelled 87.8 17 PDB header:hydrolase Chain: A: PDB Molecule:pseudoaglycone deacetylase dbv21; PDBTitle: the crystal structure of antimicrobial reagent a40926 pseudoaglycone2 deacetylase dbv21 72 c2ixdB_ not modelled 84.5 14 PDB header:hydrolase Chain: B: PDB Molecule:lmbe-related protein; PDBTitle: crystal structure of the putative deacetylase bc1534 from2 bacilus cereus 73 c3l4eA_ not modelled 77.3 14 PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized peptidase lmo0363; PDBTitle: 1.5a crystal structure of a putative peptidase e protein from listeria2 monocytogenes egd-e 74 d1jr2a_ not modelled 63.9 13 Fold:HemD-like Superfamily:HemD-like Family:HemD-like 75 c1jr2A_ not modelled 63.9 13 PDB header:lyase Chain: A: PDB Molecule:uroporphyrinogen-iii synthase; PDBTitle: structure of uroporphyrinogen iii synthase 76 c3oy2A_ not modelled 63.5 18 PDB header:viral protein,transferase Chain: A: PDB Molecule:glycosyltransferase b736l; PDBTitle: crystal structure of a putative glycosyltransferase from paramecium2 bursaria chlorella virus ny2a 77 c2x2oA_ not modelled 60.7 16 PDB header:flavoprotein Chain: A: PDB Molecule:nrdi protein; PDBTitle: the flavoprotein nrdi from bacillus cereus with the2 initially oxidized fmn cofactor in an intermediate3 radiation reduced state 78 c3dhnA_ not modelled 50.4 13 PDB header:isomerase, lyase Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase; PDBTitle: crystal structure of the putative epimerase q89z24_bactn2 from bacteroides thetaiotaomicron. northeast structural3 genomics consortium target btr310. 79 c3u80A_ not modelled 49.8 12 PDB header:unknown function Chain: A: PDB Molecule:3-dehydroquinate dehydratase, type ii; PDBTitle: 1.60 angstrom resolution crystal structure of a 3-dehydroquinate2 dehydratase-like protein from bifidobacterium longum 80 c3f0iA_ not modelled 48.9 17 PDB header:oxidoreductase Chain: A: PDB Molecule:arsenate reductase; PDBTitle: arsenate reductase from vibrio cholerae. 81 c3lwzC_ not modelled 45.6 15 PDB header:lyase Chain: C: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: 1.65 angstrom resolution crystal structure of type ii 3-2 dehydroquinate dehydratase (aroq) from yersinia pestis 82 d1dxya2 not modelled 45.3 8 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:Formate/glycerate dehydrogenases, substrate-binding domain 83 c1qvrB_ not modelled 43.9 11 PDB header:chaperone Chain: B: PDB Molecule:clpb protein; PDBTitle: crystal structure analysis of clpb 84 d2hy5b1 not modelled 42.4 23 Fold:DsrEFH-like Superfamily:DsrEFH-like Family:DsrEF-like 85 c3p9zA_ not modelled 41.1 13 PDB header:ligase Chain: A: PDB Molecule:uroporphyrinogen iii cosynthase (hemd); PDBTitle: crystal structure of uroporphyrinogen-iii synthetase from helicobacter2 pylori 26695 86 c3d8tB_ not modelled 41.0 7 PDB header:lyase Chain: B: PDB Molecule:uroporphyrinogen-iii synthase; PDBTitle: thermus thermophilus uroporphyrinogen iii synthase 87 d1mv8a3 not modelled 38.7 13 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:UDP-glucose/GDP-mannose dehydrogenase C-terminal domain Family:UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 88 c3v2hB_ not modelled 36.7 14 PDB header:oxidoreductase Chain: B: PDB Molecule:d-beta-hydroxybutyrate dehydrogenase; PDBTitle: the crystal structure of d-beta-hydroxybutyrate dehydrogenase from2 sinorhizobium meliloti 89 d2r4qa1 not modelled 35.8 15 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Fructose specific IIB subunit-like 90 c3ia7A_ not modelled 35.1 11 PDB header:transferase Chain: A: PDB Molecule:calg4; PDBTitle: crystal structure of calg4, the calicheamicin glycosyltransferase 91 c3mtqA_ not modelled 34.6 7 PDB header:transferase Chain: A: PDB Molecule:putative phosphoenolpyruvate-dependent sugar PDBTitle: crystal structure of a putative phosphoenolpyruvate-dependent sugar2 phosphotransferase system (pts) permease (kpn_04802) from klebsiella3 pneumoniae subsp. pneumoniae mgh 78578 at 1.70 a resolution 92 c5mdhB_ not modelled 34.5 15 PDB header:oxidoreductase Chain: B: PDB Molecule:malate dehydrogenase; PDBTitle: crystal structure of ternary complex of porcine cytoplasmic malate2 dehydrogenase alpha-ketomalonate and tnad at 2.4 angstroms resolution 93 d1b0aa2 not modelled 34.0 12 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Tetrahydrofolate dehydrogenase/cyclohydrolase 94 d1n1ea2 not modelled 33.0 13 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain 95 c3gg2B_ not modelled 31.5 13 PDB header:oxidoreductase Chain: B: PDB Molecule:sugar dehydrogenase, udp-glucose/gdp-mannose PDBTitle: crystal structure of udp-glucose 6-dehydrogenase from2 porphyromonas gingivalis bound to product udp-glucuronate 96 c2eklA_ not modelled 31.3 13 PDB header:oxidoreductase Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase; PDBTitle: structure of st1218 protein from sulfolobus tokodaii 97 c3fz4A_ not modelled 31.1 15 PDB header:oxidoreductase Chain: A: PDB Molecule:putative arsenate reductase; PDBTitle: the crystal structure of a possible arsenate reductase from2 streptococcus mutans ua159 98 c3gkxB_ not modelled 31.0 12 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative arsc family related protein; PDBTitle: crystal structure of putative arsc family related protein from2 bacteroides fragilis 99 d2d1pb1 not modelled 30.8 11 Fold:DsrEFH-like Superfamily:DsrEFH-like Family:DsrEF-like 100 c1gshA_ not modelled 29.5 12 PDB header:glutathione biosynthesis ligase Chain: A: PDB Molecule:glutathione biosynthetic ligase; PDBTitle: structure of escherichia coli glutathione synthetase at ph 7.5 101 c2iyaB_ not modelled 29.5 9 PDB header:transferase Chain: B: PDB Molecule:oleandomycin glycosyltransferase; PDBTitle: the crystal structure of macrolide glycosyltransferases: a2 blueprint for antibiotic engineering 102 c3kpgA_ not modelled 28.2 21 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfide-quinone reductase, putative; PDBTitle: crystal structure of sulfide:quinone oxidoreductase from2 acidithiobacillus ferrooxidans in complex with decylubiquinone 103 d1qs0b2 not modelled 28.0 13 Fold:TK C-terminal domain-like Superfamily:TK C-terminal domain-like Family:Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain 104 d1sb8a_ not modelled 27.3 17 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 105 d1t4za_ not modelled 27.0 19 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:KaiB-like 106 d1o1ya_ not modelled 26.8 14 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 107 d1rw1a_ not modelled 25.3 17 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:ArsC-like 108 c3l07B_ not modelled 25.1 15 PDB header:oxidoreductase,hydrolase Chain: B: PDB Molecule:bifunctional protein fold; PDBTitle: methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate2 cyclohydrolase, putative bifunctional protein fold from francisella3 tularensis. 109 d1dlja3 not modelled 24.6 14 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:UDP-glucose/GDP-mannose dehydrogenase C-terminal domain Family:UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 110 d2c5aa1 not modelled 24.6 13 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 111 c3p2oA_ not modelled 24.4 14 PDB header:oxidoreductase, hydrolase Chain: A: PDB Molecule:bifunctional protein fold; PDBTitle: crystal structure of fold bifunctional protein from campylobacter2 jejuni 112 d1uqra_ not modelled 23.9 20 Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase 113 c3nglA_ not modelled 23.6 12 PDB header:oxidoreductase, hydrolase Chain: A: PDB Molecule:bifunctional protein fold; PDBTitle: crystal structure of bifunctional 5,10-methylenetetrahydrofolate2 dehydrogenase / cyclohydrolase from thermoplasma acidophilum 114 d1y81a1 not modelled 23.1 18 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 115 c2gcgB_ not modelled 23.0 10 PDB header:oxidoreductase Chain: B: PDB Molecule:glyoxylate reductase/hydroxypyruvate reductase; PDBTitle: ternary crystal structure of human glyoxylate2 reductase/hydroxypyruvate reductase 116 c3iaaB_ not modelled 22.3 9 PDB header:transferase Chain: B: PDB Molecule:calg2; PDBTitle: crystal structure of calg2, calicheamicin glycosyltransferase, tdp2 bound form 117 d1a4ia2 not modelled 22.3 13 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Tetrahydrofolate dehydrogenase/cyclohydrolase 118 c3p2oB_ not modelled 21.6 14 PDB header:oxidoreductase, hydrolase Chain: B: PDB Molecule:bifunctional protein fold; PDBTitle: crystal structure of fold bifunctional protein from campylobacter2 jejuni 119 d1c0pa1 not modelled 21.5 23 Fold:Nucleotide-binding domain Superfamily:Nucleotide-binding domain Family:D-aminoacid oxidase, N-terminal domain 120 d1pzga1 not modelled 21.5 15 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0