Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	R	I	A	F	V	F	S	T	A	P	H	G	T	A	A	G	R	E	G	L	D	A	L	L	A	T	S	A	L	T	D	D	L	A	V	F	F	I	A	D	G	V	F	Q	L	L	P	G	Q	K	P	D	A	V	L	A	R	D
Secondary structure
SS confidence
Disorder		?	?												?															?																								?	?	?	?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Sequence		Y	I	A	T	F	K	L	L	G	L	Y	D	I	E	Q	C	W	V	C	A	A	S	L	R	E	R	G	L	D	P	Q	T	P	F	V	V	E	A	T	P	L	E	A	D	A	L	R	R	E	L	A	N	Y	D	V	I	L	R	F
Secondary structure
SS confidence
Disorder																																																							?		?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2d1p chain B domain 1 Region: 1 - 119 Aligned: 119 Modelled: 119 Confidence: 100.0% Identity: 100% Fold: DsrEFH-like Superfamily: DsrEFH-like Family: DsrEF-like Phyre2 PDB 2hy5 chain B domain 1 Region: 1 - 119 Aligned: 118 Modelled: 119 Confidence: 100.0% Identity: 28% Fold: DsrEFH-like Superfamily: DsrEFH-like Family: DsrEF-like Phyre2 PDB 2hy5 chain A domain 1 Region: 1 - 119 Aligned: 117 Modelled: 118 Confidence: 99.9% Identity: 21% Fold: DsrEFH-like Superfamily: DsrEFH-like Family: DsrEF-like Phyre2 PDB 1jx7 chain A Region: 2 - 119 Aligned: 114 Modelled: 118 Confidence: 99.9% Identity: 23% Fold: DsrEFH-like Superfamily: DsrEFH-like Family: DsrEF-like Phyre2 PDB 2d1p chain A domain 1 Region: 1 - 119 Aligned: 117 Modelled: 118 Confidence: 99.9% Identity: 23% Fold: DsrEFH-like Superfamily: DsrEFH-like Family: DsrEF-like Phyre2 PDB 3mc3 chain A Region: 3 - 119 Aligned: 107 Modelled: 117 Confidence: 99.8% Identity: 13% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:dsre/dsrf-like family protein; PDBTitle: crystal structure of dsre/dsrf-like family protein (np_342589.1) from2 sulfolobus solfataricus at 1.49 a resolution Phyre2 PDB 2qs7 chain D Region: 2 - 117 Aligned: 112 Modelled: 116 Confidence: 99.6% Identity: 8% PDB header:oxidoreductase Chain: D: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative oxidoreductase of the dsre/dsrf-like2 family (sso1126) from sulfolobus solfataricus p2 at 2.09 a resolution Phyre2 PDB 2hy5 chain C domain 1 Region: 3 - 119 Aligned: 100 Modelled: 117 Confidence: 99.5% Identity: 14% Fold: DsrEFH-like Superfamily: DsrEFH-like Family: DsrH-like Phyre2 PDB 3pnx chain F Region: 2 - 117 Aligned: 111 Modelled: 114 Confidence: 99.5% Identity: 14% PDB header:transferase Chain: F: PDB Molecule:putative sulfurtransferase dsre; PDBTitle: crystal structure of a putative sulfurtransferase dsre (swol_2425)2 from syntrophomonas wolfei str. goettingen at 1.92 a resolution Phyre2 PDB 2d1p chain C domain 1 Region: 5 - 119 Aligned: 94 Modelled: 104 Confidence: 99.1% Identity: 19% Fold: DsrEFH-like Superfamily: DsrEFH-like Family: DsrH-like Phyre2 PDB 1x9a chain A Region: 4 - 117 Aligned: 85 Modelled: 95 Confidence: 98.7% Identity: 14% Fold: DsrEFH-like Superfamily: DsrEFH-like Family: DsrH-like Phyre2 PDB 2pd2 chain A Region: 3 - 112 Aligned: 96 Modelled: 110 Confidence: 98.2% Identity: 14% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein st0148; PDBTitle: crystal structure of (st0148) conserved hypothetical from sulfolobus2 tokodaii strain7 Phyre2 PDB 1l1s chain A Region: 3 - 118 Aligned: 104 Modelled: 114 Confidence: 98.2% Identity: 16% Fold: DsrEFH-like Superfamily: DsrEFH-like Family: DsrEF-like Phyre2 PDB 2fb6 chain A Region: 2 - 118 Aligned: 104 Modelled: 117 Confidence: 98.1% Identity: 13% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: structure of conserved protein of unknown function bt1422 from2 bacteroides thetaiotaomicron Phyre2 PDB 2r60 chain A Region: 1 - 38 Aligned: 38 Modelled: 38 Confidence: 85.9% Identity: 13% PDB header:transferase Chain: A: PDB Molecule:glycosyl transferase, group 1; PDBTitle: structure of apo sucrose phosphate synthase (sps) of2 halothermothrix orenii Phyre2 PDB 3ia7 chain A Region: 1 - 38 Aligned: 35 Modelled: 38 Confidence: 82.7% Identity: 11% PDB header:transferase Chain: A: PDB Molecule:calg4; PDBTitle: crystal structure of calg4, the calicheamicin glycosyltransferase Phyre2 PDB 1qrd chain A Region: 1 - 38 Aligned: 38 Modelled: 38 Confidence: 78.3% Identity: 13% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Quinone reductase Phyre2 PDB 2ejb chain A Region: 1 - 49 Aligned: 45 Modelled: 49 Confidence: 61.6% Identity: 20% PDB header:lyase Chain: A: PDB Molecule:probable aromatic acid decarboxylase; PDBTitle: crystal structure of phenylacrylic acid decarboxylase from2 aquifex aeolicus Phyre2 PDB 3oy2 chain A Region: 1 - 42 Aligned: 40 Modelled: 42 Confidence: 53.7% Identity: 20% PDB header:viral protein,transferase Chain: A: PDB Molecule:glycosyltransferase b736l; PDBTitle: crystal structure of a putative glycosyltransferase from paramecium2 bursaria chlorella virus ny2a Phyre2 PDB 2afh chain E domain 1 Region: 1 - 38 Aligned: 35 Modelled: 38 Confidence: 41.5% Identity: 11% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Nitrogenase iron protein-like Phyre2 1 d2d1pb1 2 d2hy5b1 3 d2hy5a1 4 d1jx7a_ 5 d2d1pa1 6 c3mc3A_ 7 c2qs7D_ 8 d2hy5c1 9 c3pnxF_ 10 d2d1pc1 11 d1x9aa_ 12 c2pd2A_ 13 d1l1sa_ 14 c2fb6A_ 15 c2r60A_ 16 c3ia7A_ 17 d1qrda_ 18 c2ejbA_ 19 c3oy2A_ 20 d2afhe1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2d1pb1 100.0 100 Fold:DsrEFH-like Superfamily:DsrEFH-like Family:DsrEF-like 2 d2hy5b1 100.0 28 Fold:DsrEFH-like Superfamily:DsrEFH-like Family:DsrEF-like 3 d2hy5a1 99.9 21 Fold:DsrEFH-like Superfamily:DsrEFH-like Family:DsrEF-like 4 d1jx7a_ 99.9 23 Fold:DsrEFH-like Superfamily:DsrEFH-like Family:DsrEF-like 5 d2d1pa1 99.9 23 Fold:DsrEFH-like Superfamily:DsrEFH-like Family:DsrEF-like 6 c3mc3A_ 99.8 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:dsre/dsrf-like family protein; PDBTitle: crystal structure of dsre/dsrf-like family protein (np_342589.1) from2 sulfolobus solfataricus at 1.49 a resolution 7 c2qs7D_ 99.6 8 PDB header:oxidoreductase Chain: D: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative oxidoreductase of the dsre/dsrf-like2 family (sso1126) from sulfolobus solfataricus p2 at 2.09 a resolution 8 d2hy5c1 99.5 14 Fold:DsrEFH-like Superfamily:DsrEFH-like Family:DsrH-like 9 c3pnxF_ 99.5 14 PDB header:transferase Chain: F: PDB Molecule:putative sulfurtransferase dsre; PDBTitle: crystal structure of a putative sulfurtransferase dsre (swol_2425)2 from syntrophomonas wolfei str. goettingen at 1.92 a resolution 10 d2d1pc1 99.1 19 Fold:DsrEFH-like Superfamily:DsrEFH-like Family:DsrH-like 11 d1x9aa_ 98.7 14 Fold:DsrEFH-like Superfamily:DsrEFH-like Family:DsrH-like 12 c2pd2A_ 98.2 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein st0148; PDBTitle: crystal structure of (st0148) conserved hypothetical from sulfolobus2 tokodaii strain7 13 d1l1sa_ 98.2 16 Fold:DsrEFH-like Superfamily:DsrEFH-like Family:DsrEF-like 14 c2fb6A_ 98.1 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: structure of conserved protein of unknown function bt1422 from2 bacteroides thetaiotaomicron 15 c2r60A_ 85.9 13 PDB header:transferase Chain: A: PDB Molecule:glycosyl transferase, group 1; PDBTitle: structure of apo sucrose phosphate synthase (sps) of2 halothermothrix orenii 16 c3ia7A_ 82.7 11 PDB header:transferase Chain: A: PDB Molecule:calg4; PDBTitle: crystal structure of calg4, the calicheamicin glycosyltransferase 17 d1qrda_ 78.3 13 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 18 c2ejbA_ 61.6 20 PDB header:lyase Chain: A: PDB Molecule:probable aromatic acid decarboxylase; PDBTitle: crystal structure of phenylacrylic acid decarboxylase from2 aquifex aeolicus 19 c3oy2A_ 53.7 20 PDB header:viral protein,transferase Chain: A: PDB Molecule:glycosyltransferase b736l; PDBTitle: crystal structure of a putative glycosyltransferase from paramecium2 bursaria chlorella virus ny2a 20 d2afhe1 41.5 11 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 21 c2pz0B_ not modelled 40.7 13 PDB header:hydrolase Chain: B: PDB Molecule:glycerophosphoryl diester phosphodiesterase; PDBTitle: crystal structure of glycerophosphodiester phosphodiesterase (gdpd)2 from t. tengcongensis 22 d1qgoa_ not modelled 38.6 16 Fold:Chelatase-like Superfamily:Chelatase Family:Cobalt chelatase CbiK 23 c1gshA_ not modelled 37.2 13 PDB header:glutathione biosynthesis ligase Chain: A: PDB Molecule:glutathione biosynthetic ligase; PDBTitle: structure of escherichia coli glutathione synthetase at ph 7.5 24 d1gsaa1 not modelled 36.5 14 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:Prokaryotic glutathione synthetase, N-terminal domain 25 c3okaA_ not modelled 35.6 8 PDB header:transferase Chain: A: PDB Molecule:gdp-mannose-dependent alpha-(1-6)-phosphatidylinositol PDBTitle: crystal structure of corynebacterium glutamicum pimb' in complex with2 gdp-man (triclinic crystal form) 26 d1f0ka_ not modelled 33.2 21 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Peptidoglycan biosynthesis glycosyltransferase MurG 27 d1efva1 not modelled 32.1 12 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 28 c3idfA_ not modelled 31.2 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:usp-like protein; PDBTitle: the crystal structure of a usp-like protein from wolinella2 succinogenes to 2.0a 29 d1t5ba_ not modelled 29.7 7 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 30 d1gpja2 not modelled 28.5 16 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 31 d2bisa1 not modelled 28.4 19 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Glycosyl transferases group 1 32 c3l12A_ not modelled 26.5 19 PDB header:hydrolase Chain: A: PDB Molecule:putative glycerophosphoryl diester phosphodiesterase; PDBTitle: crystal structure of putative glycerophosphoryl diester2 phosphodiesterase (yp_165505.1) from silicibacter pomeroyi dss-3 at3 1.60 a resolution 33 c2l18A_ not modelled 26.1 29 PDB header:oxidoreductase Chain: A: PDB Molecule:arsenate reductase; PDBTitle: an arsenate reductase in the phosphate binding state 34 c2bekB_ not modelled 25.7 14 PDB header:chromosome segregation Chain: B: PDB Molecule:segregation protein; PDBTitle: structure of the bacterial chromosome segregation protein2 soj 35 c1t9gR_ not modelled 25.1 13 PDB header:oxidoreductase, electron transport Chain: R: PDB Molecule:electron transfer flavoprotein alpha-subunit, PDBTitle: structure of the human mcad:etf complex 36 c2zkiH_ not modelled 23.4 8 PDB header:transcription Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872) 37 d1ycga1 not modelled 22.0 8 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 38 c3no3A_ not modelled 21.3 15 PDB header:hydrolase Chain: A: PDB Molecule:glycerophosphodiester phosphodiesterase; PDBTitle: crystal structure of a glycerophosphodiester phosphodiesterase2 (bdi_0402) from parabacteroides distasonis atcc 8503 at 1.89 a3 resolution 39 d2gm3a1 not modelled 21.3 5 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like 40 c3etjB_ not modelled 21.1 23 PDB header:lyase Chain: B: PDB Molecule:phosphoribosylaminoimidazole carboxylase atpase PDBTitle: crystal structure e. coli purk in complex with mg, adp, and2 pi 41 d1ydga_ not modelled 21.0 23 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 42 c2i5bC_ not modelled 20.6 11 PDB header:transferase Chain: C: PDB Molecule:phosphomethylpyrimidine kinase; PDBTitle: the crystal structure of an adp complex of bacillus2 subtilis pyridoxal kinase provides evidence for the3 parralel emergence of enzyme activity during evolution 43 d4pfka_ not modelled 20.1 19 Fold:Phosphofructokinase Superfamily:Phosphofructokinase Family:Phosphofructokinase 44 d1q77a_ not modelled 20.1 8 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like 45 d1o1za_ not modelled 20.0 12 Fold:TIM beta/alpha-barrel Superfamily:PLC-like phosphodiesterases Family:Glycerophosphoryl diester phosphodiesterase 46 c2x6rA_ not modelled 19.9 10 PDB header:isomerase Chain: A: PDB Molecule:trehalose-synthase tret; PDBTitle: crystal structure of trehalose synthase tret from p.2 horikoshi produced by soaking in trehalose 47 d2nlya1 not modelled 19.4 17 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:Divergent polysaccharide deacetylase 48 c3lcmB_ not modelled 19.0 18 PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of smu.1420 from streptococcus mutans ua159 49 c3i10A_ not modelled 18.8 12 PDB header:hydrolase Chain: A: PDB Molecule:putative glycerophosphoryl diester phosphodiesterase; PDBTitle: crystal structure of putative glycerophosphoryl diester2 phosphodiesterase (np_812074.1) from bacteroides thetaiotaomicron3 vpi-5482 at 1.35 a resolution 50 c3d4oA_ not modelled 18.7 12 PDB header:oxidoreductase Chain: A: PDB Molecule:dipicolinate synthase subunit a; PDBTitle: crystal structure of dipicolinate synthase subunit a (np_243269.1)2 from bacillus halodurans at 2.10 a resolution 51 c3ouzA_ not modelled 18.6 21 PDB header:ligase Chain: A: PDB Molecule:biotin carboxylase; PDBTitle: crystal structure of biotin carboxylase-adp complex from campylobacter2 jejuni 52 c3mz2A_ not modelled 17.7 12 PDB header:hydrolase Chain: A: PDB Molecule:glycerophosphoryl diester phosphodiesterase; PDBTitle: crystal structure of a glycerophosphoryl diester phosphodiesterase2 (bdi_3922) from parabacteroides distasonis atcc 8503 at 1.55 a3 resolution 53 c3qjgD_ not modelled 17.3 11 PDB header:oxidoreductase Chain: D: PDB Molecule:epidermin biosynthesis protein epid; PDBTitle: epidermin biosynthesis protein epid from staphylococcus aureus 54 c1hyqA_ not modelled 17.3 17 PDB header:cell cycle Chain: A: PDB Molecule:cell division inhibitor (mind-1); PDBTitle: mind bacterial cell division regulator from a. fulgidus 55 d1hyqa_ not modelled 17.3 17 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 56 c2rirA_ not modelled 17.1 14 PDB header:oxidoreductase Chain: A: PDB Molecule:dipicolinate synthase, a chain; PDBTitle: crystal structure of dipicolinate synthase, a chain, from bacillus2 subtilis 57 c2dzdB_ not modelled 16.5 10 PDB header:ligase Chain: B: PDB Molecule:pyruvate carboxylase; PDBTitle: crystal structure of the biotin carboxylase domain of2 pyruvate carboxylase 58 c3crnA_ not modelled 16.4 15 PDB header:signaling protein Chain: A: PDB Molecule:response regulator receiver domain protein, chey-like; PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1 59 d1vdca2 not modelled 15.9 8 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 60 d1rzua_ not modelled 15.7 11 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Glycosyl transferases group 1 61 c3c1oA_ not modelled 14.9 16 PDB header:oxidoreductase Chain: A: PDB Molecule:eugenol synthase; PDBTitle: the multiple phenylpropene synthases in both clarkia2 breweri and petunia hybrida represent two distinct lineages 62 c3i42A_ not modelled 14.8 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:response regulator receiver domain protein (chey- PDBTitle: structure of response regulator receiver domain (chey-like)2 from methylobacillus flagellatus 63 d3lada2 not modelled 14.7 24 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 64 c2x0dA_ not modelled 14.6 12 PDB header:transferase Chain: A: PDB Molecule:wsaf; PDBTitle: apo structure of wsaf 65 c1gpjA_ not modelled 14.6 16 PDB header:reductase Chain: A: PDB Molecule:glutamyl-trna reductase; PDBTitle: glutamyl-trna reductase from methanopyrus kandleri 66 d1rtta_ not modelled 14.4 10 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 67 c3mt0A_ not modelled 14.4 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pa1789; PDBTitle: the crystal structure of a functionally unknown protein pa1789 from2 pseudomonas aeruginosa pao1 68 c1ulzA_ not modelled 14.0 13 PDB header:ligase Chain: A: PDB Molecule:pyruvate carboxylase n-terminal domain; PDBTitle: crystal structure of the biotin carboxylase subunit of pyruvate2 carboxylase 69 c2otdC_ not modelled 14.0 11 PDB header:hydrolase Chain: C: PDB Molecule:glycerophosphodiester phosphodiesterase; PDBTitle: the crystal structure of the glycerophosphodiester phosphodiesterase2 from shigella flexneri 2a 70 c3g5rA_ not modelled 13.9 33 PDB header:transferase Chain: A: PDB Molecule:methylenetetrahydrofolate--trna-(uracil-5-)- PDBTitle: crystal structure of thermus thermophilus trmfo in complex with2 tetrahydrofolate 71 d2qwxa1 not modelled 13.8 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 72 d1ebda2 not modelled 13.0 16 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 73 d1ojta2 not modelled 12.8 32 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 74 c2qsjB_ not modelled 12.6 12 PDB header:transcription Chain: B: PDB Molecule:dna-binding response regulator, luxr family; PDBTitle: crystal structure of a luxr family dna-binding response2 regulator from silicibacter pomeroyi 75 c3ab8B_ not modelled 12.6 24 PDB header:unknown function Chain: B: PDB Molecule:putative uncharacterized protein ttha0350; PDBTitle: crystal structure of the hypothetical tandem-type universal stress2 protein ttha0350 complexed with atps. 76 d1ihua1 not modelled 12.5 6 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 77 c2o55A_ not modelled 12.5 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative glycerophosphodiester phosphodiesterase; PDBTitle: crystal structure of a putative glycerophosphodiester2 phosphodiesterase from galdieria sulphuraria 78 d1vmea1 not modelled 12.4 10 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 79 c3fozB_ not modelled 12.2 9 PDB header:transferase/rna Chain: B: PDB Molecule:trna delta(2)-isopentenylpyrophosphate transferase; PDBTitle: structure of e. coli isopentenyl-trna transferase in complex with e.2 coli trna(phe) 80 d1q8ka2 not modelled 12.0 29 Fold:Ferredoxin-like Superfamily:eIF-2-alpha, C-terminal domain Family:eIF-2-alpha, C-terminal domain 81 c3a11D_ not modelled 11.8 12 PDB header:isomerase Chain: D: PDB Molecule:translation initiation factor eif-2b, delta PDBTitle: crystal structure of ribose-1,5-bisphosphate isomerase from2 thermococcus kodakaraensis kod1 82 c2gejA_ not modelled 11.7 9 PDB header:transferase Chain: A: PDB Molecule:phosphatidylinositol mannosyltransferase (pima); PDBTitle: crystal structure of phosphatidylinositol mannosyltransferase (pima)2 from mycobacterium smegmatis in complex with gdp-man 83 d1cp2a_ not modelled 11.6 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 84 d1efpa1 not modelled 10.9 11 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 85 c2gi4A_ not modelled 10.7 16 PDB header:hydrolase Chain: A: PDB Molecule:possible phosphotyrosine protein phosphatase; PDBTitle: solution structure of the low molecular weight protein2 tyrosine phosphatase from campylobacter jejuni. 86 c2p76H_ not modelled 10.7 10 PDB header:hydrolase Chain: H: PDB Molecule:glycerophosphoryl diester phosphodiesterase; PDBTitle: crystal structure of a glycerophosphodiester phosphodiesterase from2 staphylococcus aureus 87 d2iw1a1 not modelled 10.5 18 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Glycosyl transferases group 1 88 d1ydya1 not modelled 10.4 11 Fold:TIM beta/alpha-barrel Superfamily:PLC-like phosphodiesterases Family:Glycerophosphoryl diester phosphodiesterase 89 c1ydyA_ not modelled 10.4 11 PDB header:hydrolase Chain: A: PDB Molecule:glycerophosphoryl diester phosphodiesterase; PDBTitle: crystal structure of periplasmic glycerophosphodiester2 phosphodiesterase from escherichia coli 90 c3ks6A_ not modelled 10.3 18 PDB header:hydrolase Chain: A: PDB Molecule:glycerophosphoryl diester phosphodiesterase; PDBTitle: crystal structure of putative glycerophosphoryl diester2 phosphodiesterase (17743486) from agrobacterium tumefaciens3 str. c58 (dupont) at 1.80 a resolution 91 c3g8cB_ not modelled 9.9 23 PDB header:ligase Chain: B: PDB Molecule:biotin carboxylase; PDBTitle: crystal stucture of biotin carboxylase in complex with2 biotin, bicarbonate, adp and mg ion 92 c3dzcA_ not modelled 9.9 20 PDB header:isomerase Chain: A: PDB Molecule:udp-n-acetylglucosamine 2-epimerase; PDBTitle: 2.35 angstrom resolution structure of wecb (vc0917), a udp-n-2 acetylglucosamine 2-epimerase from vibrio cholerae. 93 d1fmfa_ not modelled 9.7 14 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 94 c3ch0A_ not modelled 9.7 8 PDB header:hydrolase Chain: A: PDB Molecule:glycerophosphodiester phosphodiesterase; PDBTitle: crystal structure of glycerophosphoryl diester phosphodiesterase2 (yp_677622.1) from cytophaga hutchinsonii atcc 33406 at 1.50 a3 resolution 95 d1l7da2 not modelled 9.7 15 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:L-alanine dehydrogenase-like 96 d1wzua1 not modelled 9.6 21 Fold:NadA-like Superfamily:NadA-like Family:NadA-like 97 c2qzsA_ not modelled 9.5 16 PDB header:transferase Chain: A: PDB Molecule:glycogen synthase; PDBTitle: crystal structure of wild-type e.coli gs in complex with adp2 and glucose(wtgsb) 98 c3eywA_ not modelled 9.4 4 PDB header:transport protein Chain: A: PDB Molecule:c-terminal domain of glutathione-regulated potassium-efflux PDBTitle: crystal structure of the c-terminal domain of e. coli kefc in complex2 with keff 99 d1dxla2 not modelled 9.4 20 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0