1 c2dmtA_
99.9
40
PDB header: dna binding proteinChain: A: PDB Molecule: homeobox protein barh-like 1;PDBTitle: solution structure of the homeobox domain of homeobox2 protein barh-like 1
2 d1pufa_
99.9
33
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain3 c2dmsA_
99.9
51
PDB header: dna binding proteinChain: A: PDB Molecule: homeobox protein otx2;PDBTitle: solution structure of the homeobox domain of homeobox2 protein otx2
4 c2djnA_
99.9
37
PDB header: transcriptionChain: A: PDB Molecule: homeobox protein dlx-5;PDBTitle: the solution structure of the homeobox domain of human2 homeobox protein dlx-5
5 c2kt0A_
99.9
29
PDB header: transcription regulationChain: A: PDB Molecule: homeobox protein nanog;PDBTitle: solution structure of human stem cell transcription factor nanog2 homeodomain fragment
6 d1vnda_
99.9
32
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain7 c3a01A_
99.9
33
PDB header: gene regulation/dnaChain: A: PDB Molecule: homeodomain-containing protein;PDBTitle: crystal structure of aristaless and clawless homeodomains bound to dna
8 d1ftza_
99.9
29
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain9 d1b72a_
99.8
38
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain10 d1zq3p1
99.8
31
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain11 d1nk3p_
99.8
35
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain12 d1ahdp_
99.8
30
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain13 c2dmuA_
99.8
56
PDB header: dna binding proteinChain: A: PDB Molecule: homeobox protein goosecoid;PDBTitle: solution structure of the homeobox domain of homeobox2 protein goosecoid
14 d2lfba_
99.8
27
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain15 d1fjla_
99.8
62
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain16 c2l9rA_
99.8
31
PDB header: transcriptionChain: A: PDB Molecule: homeobox protein nkx-3.1;PDBTitle: solution nmr structure of homeobox domain of homeobox protein nkx-3.12 from homo sapiens, northeast structural genomics consortium target3 hr6470a
17 d1ftta_
99.8
30
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain18 c2dmqA_
99.8
33
PDB header: dna binding proteinChain: A: PDB Molecule: lim/homeobox protein lhx9;PDBTitle: solution structure of the homeobox domain of lim/homeobox2 protein lhx9
19 c3d1nK_
99.8
36
PDB header: transcription regulator/dnaChain: K: PDB Molecule: pou domain, class 6, transcription factor 1;PDBTitle: structure of human brn-5 transcription factor in complex2 with corticotrophin-releasing hormone gene promoter
20 d2e1oa1
99.8
39
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain21 d2craa1
not modelled
99.8
30
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain22 d1b8ia_
not modelled
99.8
34
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain23 d1uhsa_
not modelled
99.8
27
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain24 d1ig7a_
not modelled
99.8
40
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain25 c2da3A_
not modelled
99.8
34
PDB header: transcriptionChain: A: PDB Molecule: alpha-fetoprotein enhancer binding protein;PDBTitle: solution structure of the third homeobox domain of at-2 binding transcription factor 1 (atbf1)
26 d2cufa1
not modelled
99.8
32
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain27 d2cuea1
99.8
63
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain28 c2k40A_
not modelled
99.8
47
PDB header: dna binding proteinChain: A: PDB Molecule: homeobox expressed in es cells 1;PDBTitle: nmr structure of hesx-1 homeodomain double mutant r31l/e42l
29 d1fjlb_
99.8
64
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain30 d1jgga_
not modelled
99.8
49
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain31 d1ztra1
not modelled
99.8
36
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain32 c2da2A_
not modelled
99.8
40
PDB header: transcriptionChain: A: PDB Molecule: alpha-fetoprotein enhancer binding protein;PDBTitle: solution structure of the second homeobox domain of at-2 binding transcription factor 1 (atbf1)
33 d1bw5a_
not modelled
99.8
32
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain34 c2da1A_
not modelled
99.8
29
PDB header: transcriptionChain: A: PDB Molecule: alpha-fetoprotein enhancer binding protein;PDBTitle: solution structure of the first homeobox domain of at-2 binding transcription factor 1 (atbf1)
35 d2hddb_
not modelled
99.8
39
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain36 c2vi6F_
not modelled
99.8
36
PDB header: transcriptionChain: F: PDB Molecule: homeobox protein nanog;PDBTitle: crystal structure of the nanog homeodomain
37 d1sana_
not modelled
99.8
30
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain38 d9anta_
not modelled
99.8
35
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain39 d1ocpa_
not modelled
99.8
30
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain40 d1hdpa_
not modelled
99.8
27
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain41 d1wh5a_
not modelled
99.8
21
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain42 c3l1pA_
not modelled
99.8
28
PDB header: transcription/dnaChain: A: PDB Molecule: pou domain, class 5, transcription factor 1;PDBTitle: pou protein:dna complex
43 d1octc1
not modelled
99.8
31
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain44 d1yz8p1
not modelled
99.8
65
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain45 d1gt0c1
not modelled
99.8
31
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain46 c2dn0A_
not modelled
99.8
25
PDB header: transcriptionChain: A: PDB Molecule: zinc fingers and homeoboxes protein 3;PDBTitle: solution structure of the second homeobox domain of human2 zinc fingers and homeoboxes protein 3
47 c3a03A_
not modelled
99.8
35
PDB header: gene regulationChain: A: PDB Molecule: t-cell leukemia homeobox protein 2;PDBTitle: crystal structure of hox11l1 homeodomain
48 d1f43a_
not modelled
99.8
21
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain49 d1mh3a1
not modelled
99.8
24
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain50 d1du0a_
not modelled
99.8
37
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain51 d1p7ia_
not modelled
99.8
40
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain52 c1hf0A_
not modelled
99.8
31
PDB header: transcription factorChain: A: PDB Molecule: octamer-binding transcription factor 1;PDBTitle: crystal structure of the dna-binding domain of oct-1 bound2 to dna as a dimer
53 d1le8a_
not modelled
99.8
23
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain54 d2hi3a1
not modelled
99.8
30
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain55 c1ic8B_
not modelled
99.8
29
PDB header: transcription/dnaChain: B: PDB Molecule: hepatocyte nuclear factor 1-alpha;PDBTitle: hepatocyte nuclear factor 1a bound to dna : mody3 gene2 product
56 d1au7a1
not modelled
99.8
31
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain57 c2h8rA_
not modelled
99.8
30
PDB header: transcription activator/dnaChain: A: PDB Molecule: hepatocyte nuclear factor 1-beta;PDBTitle: hepatocyte nuclear factor 1b bound to dna: mody5 gene2 product
58 d1e3oc1
not modelled
99.8
31
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain59 c2da4A_
not modelled
99.8
23
PDB header: structural genomics, unknown functionChain: A: PDB Molecule: hypothetical protein dkfzp686k21156;PDBTitle: solution structure of the homeobox domain of the2 hypothetical protein, dkfzp686k21156
60 d2ecca1
not modelled
99.7
19
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain61 c2dmnA_
not modelled
99.7
19
PDB header: transcriptionChain: A: PDB Molecule: homeobox protein tgif2lx;PDBTitle: the solution structure of the homeobox domain of human2 homeobox protein tgif2lx
62 c2da5A_
not modelled
99.7
24
PDB header: dna binding proteinChain: A: PDB Molecule: zinc fingers and homeoboxes protein 3;PDBTitle: solution structure of the second homeobox domain of zinc2 fingers and homeoboxes protein 3 (triple homeobox 13 protein)
63 c1au7B_
not modelled
99.7
30
PDB header: transcription/dnaChain: B: PDB Molecule: protein pit-1;PDBTitle: pit-1 mutant/dna complex
64 d1lfup_
not modelled
99.7
27
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain65 c2dmpA_
not modelled
99.7
19
PDB header: dna binding proteinChain: A: PDB Molecule: zinc fingers and homeoboxes protein 2;PDBTitle: solution structure of the third homeobox domain of zinc2 fingers and homeoboxes protein 2
66 d1p7jb_
not modelled
99.7
35
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain67 d2ecba1
not modelled
99.7
18
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain68 c1s7eA_
not modelled
99.7
20
PDB header: transcriptionChain: A: PDB Molecule: hepatocyte nuclear factor 6;PDBTitle: solution structure of hnf-6
69 c3narA_
not modelled
99.7
22
PDB header: transcriptionChain: A: PDB Molecule: zinc fingers and homeoboxes protein 1;PDBTitle: crystal structure of zhx1 hd4 (zinc-fingers and homeoboxes protein 1,2 homeodomain 4)
70 c2da7A_
not modelled
99.7
16
PDB header: dna binding proteinChain: A: PDB Molecule: zinc finger homeobox protein 1b;PDBTitle: solution structure of the homeobox domain of zinc finger2 homeobox protein 1b (smad interacting protein 1)
71 d1s7ea1
not modelled
99.7
24
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain72 d1pufb_
not modelled
99.7
31
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain73 c2xsdC_
not modelled
99.7
30
PDB header: transcription/dnaChain: C: PDB Molecule: pou domain, class 3, transcription factor 1;PDBTitle: crystal structure of the dimeric oct-6 (pou3f1) pou domain2 bound to palindromic more dna
74 d1lfba_
not modelled
99.7
29
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain75 d1mnmc_
not modelled
99.7
29
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain76 c2e19A_
not modelled
99.7
22
PDB header: transcriptionChain: A: PDB Molecule: transcription factor 8;PDBTitle: solution structure of the homeobox domain from human nil-2-2 a zinc finger protein, transcription factor 8
77 c3nauA_
not modelled
99.7
25
PDB header: transcriptionChain: A: PDB Molecule: zinc fingers and homeoboxes protein 2;PDBTitle: crystal structure of zhx2 hd2 (zinc-fingers and homeoboxes protein 2,2 homeodomain 2)
78 d1le8b_
not modelled
99.7
28
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain79 d1o4xa1
not modelled
99.7
29
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain80 d1du6a_
not modelled
99.7
26
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain81 d1yrnb_
not modelled
99.7
28
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain82 d1akha_
not modelled
99.7
25
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain83 d2cqxa1
not modelled
99.6
25
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain84 d1x2na1
not modelled
99.6
22
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain85 c2lk2A_
not modelled
99.6
14
PDB header: transcriptionChain: A: PDB Molecule: homeobox protein tgif1;PDBTitle: solution nmr structure of homeobox domain (171-248) of human homeobox2 protein tgif1, northeast structural genomics consortium target3 hr4411b
86 d1x2ma1
not modelled
99.6
34
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain87 d2r5yb1
not modelled
99.6
31
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain88 d1k61a_
not modelled
99.6
29
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain89 d2p81a1
not modelled
99.5
33
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain90 c2nzzA_
not modelled
98.0
41
PDB header: membrane proteinChain: A: PDB Molecule: penetratin conjugated gas (374-394) peptide;PDBTitle: nmr structure analysis of the penetratin conjugated gas2 (374-394) peptide
91 c1mh3A_
not modelled
97.5
25
PDB header: sugar binding, dna binding proteinChain: A: PDB Molecule: maltose binding-a1 homeodomain protein chimera;PDBTitle: maltose binding-a1 homeodomain protein chimera, crystal2 form i
92 d1wi3a_
not modelled
97.0
26
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain93 d1wh7a_
not modelled
96.5
27
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain94 c2elhA_
not modelled
91.8
19
PDB header: dna binding proteinChain: A: PDB Molecule: cg11849-pa;PDBTitle: solution structure of the cenp-b n-terminal dna-binding2 domain of fruit fly distal antenna cg11849-pa
95 d1hlva1
not modelled
90.8
14
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Centromere-binding96 c1hlvA_
not modelled
87.1
14
PDB header: dna binding protein/dnaChain: A: PDB Molecule: major centromere autoantigen b;PDBTitle: crystal structure of cenp-b(1-129) complexed with the cenp-2 b box dna
97 c3bdnB_
not modelled
86.0
22
PDB header: transcription/dnaChain: B: PDB Molecule: lambda repressor;PDBTitle: crystal structure of the lambda repressor
98 d1smyf2
not modelled
85.6
9
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Sigma3 and sigma4 domains of RNA polymerase sigma factorsFamily: Sigma4 domain99 c2ys9A_
not modelled
83.4
20
PDB header: transcriptionChain: A: PDB Molecule: homeobox and leucine zipper protein homez;PDBTitle: structure of the third homeodomain from the human homeobox2 and leucine zipper protein, homez
100 c2ktgA_
not modelled
79.1
15
PDB header: ca-binding proteinChain: A: PDB Molecule: calmodulin, putative;PDBTitle: calmodulin like protein from entamoeba histolytica: solution structure2 and calcium binding properties of a partially folded protein
101 d1rp3a2
not modelled
78.6
10
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Sigma3 and sigma4 domains of RNA polymerase sigma factorsFamily: Sigma4 domain102 c1or7A_
not modelled
78.5
20
PDB header: transcriptionChain: A: PDB Molecule: rna polymerase sigma-e factor;PDBTitle: crystal structure of escherichia coli sigmae with the cytoplasmic2 domain of its anti-sigma rsea
103 d1avsa_
not modelled
76.5
8
Fold: EF Hand-likeSuperfamily: EF-handFamily: Calmodulin-like104 c3mzyA_
not modelled
74.2
9
PDB header: rna binding proteinChain: A: PDB Molecule: rna polymerase sigma-h factor;PDBTitle: the crystal structure of the rna polymerase sigma-h factor from2 fusobacterium nucleatum to 2.5a
105 c1rp3G_
not modelled
73.0
10
PDB header: transcriptionChain: G: PDB Molecule: rna polymerase sigma factor sigma-28 (flia);PDBTitle: cocrystal structure of the flagellar sigma/anti-sigma2 complex, sigma-28/flgm
106 d1rioa_
not modelled
71.5
22
Fold: lambda repressor-like DNA-binding domainsSuperfamily: lambda repressor-like DNA-binding domainsFamily: Phage repressors107 c3hugA_
not modelled
71.4
11
PDB header: transcription/membrane proteinChain: A: PDB Molecule: rna polymerase sigma factor;PDBTitle: crystal structure of mycobacterium tuberculosis anti-sigma factor rsla2 in complex with -35 promoter binding domain of sigl
108 d1bw6a_
not modelled
70.1
15
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Centromere-binding109 d1or7a1
not modelled
69.9
20
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Sigma3 and sigma4 domains of RNA polymerase sigma factorsFamily: Sigma4 domain110 c2lfwA_
not modelled
67.9
20
PDB header: signaling proteinChain: A: PDB Molecule: phyr sigma-like domain;PDBTitle: nmr structure of the phyrsl-nepr complex from sphingomonas sp. fr1
111 c3fmyA_
not modelled
66.0
8
PDB header: dna binding proteinChain: A: PDB Molecule: hth-type transcriptional regulator mqsaPDBTitle: structure of the c-terminal domain of the e. coli protein2 mqsa (ygit/b3021)
112 d1iufa1
not modelled
63.2
29
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Centromere-binding113 d1l3la1
not modelled
61.2
14
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: C-terminal effector domain of the bipartite response regulatorsFamily: GerE-like (LuxR/UhpA family of transcriptional regulators)114 c2o8xA_
not modelled
59.9
12
PDB header: transcriptionChain: A: PDB Molecule: probable rna polymerase sigma-c factor;PDBTitle: crystal structure of the "-35 element" promoter recognition domain of2 mycobacterium tuberculosis sigc
115 c2fjrB_
not modelled
58.9
6
PDB header: transcription regulatorChain: B: PDB Molecule: repressor protein ci;PDBTitle: crystal structure of bacteriophage 186
116 c3sztB_
not modelled
58.8
18
PDB header: transcriptionChain: B: PDB Molecule: quorum-sensing control repressor;PDBTitle: quorum sensing control repressor, qscr, bound to n-3-oxo-dodecanoyl-l-2 homoserine lactone
117 d1sw8a_
not modelled
58.1
19
Fold: EF Hand-likeSuperfamily: EF-handFamily: Calmodulin-like118 d1g8ia_
not modelled
55.7
29
Fold: EF Hand-likeSuperfamily: EF-handFamily: Calmodulin-like119 c2q1zA_
not modelled
54.9
19
PDB header: transcriptionChain: A: PDB Molecule: rpoe, ecf sige;PDBTitle: crystal structure of rhodobacter sphaeroides sige in complex with the2 anti-sigma chrr
120 d1fsea_
not modelled
54.1
19
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: C-terminal effector domain of the bipartite response regulatorsFamily: GerE-like (LuxR/UhpA family of transcriptional regulators)
