Emaill.a.kelley@imperial.ac.uk
DescriptionQ8NFW5
DateFri May 25 09:40:17 BST 2012
Unique Job ID1b73ba07f7431e1f

Detailed template information 

#Template Alignment Coverage3D Model Confidence% i.d. Template Information
1c2dmtA_



99.9 40 PDB header:dna binding protein
Chain: A: PDB Molecule:homeobox protein barh-like 1;
PDBTitle: solution structure of the homeobox domain of homeobox2 protein barh-like 1
2d1pufa_



99.9 33 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
3c2dmsA_



99.9 51 PDB header:dna binding protein
Chain: A: PDB Molecule:homeobox protein otx2;
PDBTitle: solution structure of the homeobox domain of homeobox2 protein otx2
4c2djnA_



99.9 37 PDB header:transcription
Chain: A: PDB Molecule:homeobox protein dlx-5;
PDBTitle: the solution structure of the homeobox domain of human2 homeobox protein dlx-5
5c2kt0A_



99.9 29 PDB header:transcription regulation
Chain: A: PDB Molecule:homeobox protein nanog;
PDBTitle: solution structure of human stem cell transcription factor nanog2 homeodomain fragment
6d1vnda_



99.9 32 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
7c3a01A_



99.9 33 PDB header:gene regulation/dna
Chain: A: PDB Molecule:homeodomain-containing protein;
PDBTitle: crystal structure of aristaless and clawless homeodomains bound to dna
8d1ftza_



99.9 29 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
9d1b72a_



99.8 38 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
10d1zq3p1



99.8 31 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
11d1nk3p_



99.8 35 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
12d1ahdp_



99.8 30 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
13c2dmuA_



99.8 56 PDB header:dna binding protein
Chain: A: PDB Molecule:homeobox protein goosecoid;
PDBTitle: solution structure of the homeobox domain of homeobox2 protein goosecoid
14d2lfba_



99.8 27 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
15d1fjla_



99.8 62 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
16c2l9rA_



99.8 31 PDB header:transcription
Chain: A: PDB Molecule:homeobox protein nkx-3.1;
PDBTitle: solution nmr structure of homeobox domain of homeobox protein nkx-3.12 from homo sapiens, northeast structural genomics consortium target3 hr6470a
17d1ftta_



99.8 30 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
18c2dmqA_



99.8 33 PDB header:dna binding protein
Chain: A: PDB Molecule:lim/homeobox protein lhx9;
PDBTitle: solution structure of the homeobox domain of lim/homeobox2 protein lhx9
19c3d1nK_



99.8 36 PDB header:transcription regulator/dna
Chain: K: PDB Molecule:pou domain, class 6, transcription factor 1;
PDBTitle: structure of human brn-5 transcription factor in complex2 with corticotrophin-releasing hormone gene promoter
20d2e1oa1



99.8 39 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
21d2craa1



not modelled 99.8 30 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
22d1b8ia_



not modelled 99.8 34 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
23d1uhsa_



not modelled 99.8 27 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
24d1ig7a_



not modelled 99.8 40 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
25c2da3A_



not modelled 99.8 34 PDB header:transcription
Chain: A: PDB Molecule:alpha-fetoprotein enhancer binding protein;
PDBTitle: solution structure of the third homeobox domain of at-2 binding transcription factor 1 (atbf1)
26d2cufa1



not modelled 99.8 32 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
27d2cuea1



99.8 63 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
28c2k40A_



not modelled 99.8 47 PDB header:dna binding protein
Chain: A: PDB Molecule:homeobox expressed in es cells 1;
PDBTitle: nmr structure of hesx-1 homeodomain double mutant r31l/e42l
29d1fjlb_



99.8 64 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
30d1jgga_



not modelled 99.8 49 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
31d1ztra1



not modelled 99.8 36 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
32c2da2A_



not modelled 99.8 40 PDB header:transcription
Chain: A: PDB Molecule:alpha-fetoprotein enhancer binding protein;
PDBTitle: solution structure of the second homeobox domain of at-2 binding transcription factor 1 (atbf1)
33d1bw5a_



not modelled 99.8 32 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
34c2da1A_



not modelled 99.8 29 PDB header:transcription
Chain: A: PDB Molecule:alpha-fetoprotein enhancer binding protein;
PDBTitle: solution structure of the first homeobox domain of at-2 binding transcription factor 1 (atbf1)
35d2hddb_



not modelled 99.8 39 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
36c2vi6F_



not modelled 99.8 36 PDB header:transcription
Chain: F: PDB Molecule:homeobox protein nanog;
PDBTitle: crystal structure of the nanog homeodomain
37d1sana_



not modelled 99.8 30 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
38d9anta_



not modelled 99.8 35 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
39d1ocpa_



not modelled 99.8 30 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
40d1hdpa_



not modelled 99.8 27 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
41d1wh5a_



not modelled 99.8 21 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
42c3l1pA_



not modelled 99.8 28 PDB header:transcription/dna
Chain: A: PDB Molecule:pou domain, class 5, transcription factor 1;
PDBTitle: pou protein:dna complex
43d1octc1



not modelled 99.8 31 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
44d1yz8p1



not modelled 99.8 65 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
45d1gt0c1



not modelled 99.8 31 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
46c2dn0A_



not modelled 99.8 25 PDB header:transcription
Chain: A: PDB Molecule:zinc fingers and homeoboxes protein 3;
PDBTitle: solution structure of the second homeobox domain of human2 zinc fingers and homeoboxes protein 3
47c3a03A_



not modelled 99.8 35 PDB header:gene regulation
Chain: A: PDB Molecule:t-cell leukemia homeobox protein 2;
PDBTitle: crystal structure of hox11l1 homeodomain
48d1f43a_



not modelled 99.8 21 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
49d1mh3a1



not modelled 99.8 24 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
50d1du0a_



not modelled 99.8 37 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
51d1p7ia_



not modelled 99.8 40 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
52c1hf0A_



not modelled 99.8 31 PDB header:transcription factor
Chain: A: PDB Molecule:octamer-binding transcription factor 1;
PDBTitle: crystal structure of the dna-binding domain of oct-1 bound2 to dna as a dimer
53d1le8a_



not modelled 99.8 23 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
54d2hi3a1



not modelled 99.8 30 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
55c1ic8B_



not modelled 99.8 29 PDB header:transcription/dna
Chain: B: PDB Molecule:hepatocyte nuclear factor 1-alpha;
PDBTitle: hepatocyte nuclear factor 1a bound to dna : mody3 gene2 product
56d1au7a1



not modelled 99.8 31 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
57c2h8rA_



not modelled 99.8 30 PDB header:transcription activator/dna
Chain: A: PDB Molecule:hepatocyte nuclear factor 1-beta;
PDBTitle: hepatocyte nuclear factor 1b bound to dna: mody5 gene2 product
58d1e3oc1



not modelled 99.8 31 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
59c2da4A_



not modelled 99.8 23 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein dkfzp686k21156;
PDBTitle: solution structure of the homeobox domain of the2 hypothetical protein, dkfzp686k21156
60d2ecca1



not modelled 99.7 19 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
61c2dmnA_



not modelled 99.7 19 PDB header:transcription
Chain: A: PDB Molecule:homeobox protein tgif2lx;
PDBTitle: the solution structure of the homeobox domain of human2 homeobox protein tgif2lx
62c2da5A_



not modelled 99.7 24 PDB header:dna binding protein
Chain: A: PDB Molecule:zinc fingers and homeoboxes protein 3;
PDBTitle: solution structure of the second homeobox domain of zinc2 fingers and homeoboxes protein 3 (triple homeobox 13 protein)
63c1au7B_



not modelled 99.7 30 PDB header:transcription/dna
Chain: B: PDB Molecule:protein pit-1;
PDBTitle: pit-1 mutant/dna complex
64d1lfup_



not modelled 99.7 27 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
65c2dmpA_



not modelled 99.7 19 PDB header:dna binding protein
Chain: A: PDB Molecule:zinc fingers and homeoboxes protein 2;
PDBTitle: solution structure of the third homeobox domain of zinc2 fingers and homeoboxes protein 2
66d1p7jb_



not modelled 99.7 35 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
67d2ecba1



not modelled 99.7 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
68c1s7eA_



not modelled 99.7 20 PDB header:transcription
Chain: A: PDB Molecule:hepatocyte nuclear factor 6;
PDBTitle: solution structure of hnf-6
69c3narA_



not modelled 99.7 22 PDB header:transcription
Chain: A: PDB Molecule:zinc fingers and homeoboxes protein 1;
PDBTitle: crystal structure of zhx1 hd4 (zinc-fingers and homeoboxes protein 1,2 homeodomain 4)
70c2da7A_



not modelled 99.7 16 PDB header:dna binding protein
Chain: A: PDB Molecule:zinc finger homeobox protein 1b;
PDBTitle: solution structure of the homeobox domain of zinc finger2 homeobox protein 1b (smad interacting protein 1)
71d1s7ea1



not modelled 99.7 24 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
72d1pufb_



not modelled 99.7 31 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
73c2xsdC_



not modelled 99.7 30 PDB header:transcription/dna
Chain: C: PDB Molecule:pou domain, class 3, transcription factor 1;
PDBTitle: crystal structure of the dimeric oct-6 (pou3f1) pou domain2 bound to palindromic more dna
74d1lfba_



not modelled 99.7 29 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
75d1mnmc_



not modelled 99.7 29 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
76c2e19A_



not modelled 99.7 22 PDB header:transcription
Chain: A: PDB Molecule:transcription factor 8;
PDBTitle: solution structure of the homeobox domain from human nil-2-2 a zinc finger protein, transcription factor 8
77c3nauA_



not modelled 99.7 25 PDB header:transcription
Chain: A: PDB Molecule:zinc fingers and homeoboxes protein 2;
PDBTitle: crystal structure of zhx2 hd2 (zinc-fingers and homeoboxes protein 2,2 homeodomain 2)
78d1le8b_



not modelled 99.7 28 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
79d1o4xa1



not modelled 99.7 29 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
80d1du6a_



not modelled 99.7 26 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
81d1yrnb_



not modelled 99.7 28 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
82d1akha_



not modelled 99.7 25 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
83d2cqxa1



not modelled 99.6 25 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
84d1x2na1



not modelled 99.6 22 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
85c2lk2A_



not modelled 99.6 14 PDB header:transcription
Chain: A: PDB Molecule:homeobox protein tgif1;
PDBTitle: solution nmr structure of homeobox domain (171-248) of human homeobox2 protein tgif1, northeast structural genomics consortium target3 hr4411b
86d1x2ma1



not modelled 99.6 34 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
87d2r5yb1



not modelled 99.6 31 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
88d1k61a_



not modelled 99.6 29 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
89d2p81a1



not modelled 99.5 33 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
90c2nzzA_



not modelled 98.0 41 PDB header:membrane protein
Chain: A: PDB Molecule:penetratin conjugated gas (374-394) peptide;
PDBTitle: nmr structure analysis of the penetratin conjugated gas2 (374-394) peptide
91c1mh3A_



not modelled 97.5 25 PDB header:sugar binding, dna binding protein
Chain: A: PDB Molecule:maltose binding-a1 homeodomain protein chimera;
PDBTitle: maltose binding-a1 homeodomain protein chimera, crystal2 form i
92d1wi3a_



not modelled 97.0 26 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
93d1wh7a_



not modelled 96.5 27 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
94c2elhA_



not modelled 91.8 19 PDB header:dna binding protein
Chain: A: PDB Molecule:cg11849-pa;
PDBTitle: solution structure of the cenp-b n-terminal dna-binding2 domain of fruit fly distal antenna cg11849-pa
95d1hlva1



not modelled 90.8 14 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Centromere-binding
96c1hlvA_



not modelled 87.1 14 PDB header:dna binding protein/dna
Chain: A: PDB Molecule:major centromere autoantigen b;
PDBTitle: crystal structure of cenp-b(1-129) complexed with the cenp-2 b box dna
97c3bdnB_



not modelled 86.0 22 PDB header:transcription/dna
Chain: B: PDB Molecule:lambda repressor;
PDBTitle: crystal structure of the lambda repressor
98d1smyf2



not modelled 85.6 9 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
99c2ys9A_



not modelled 83.4 20 PDB header:transcription
Chain: A: PDB Molecule:homeobox and leucine zipper protein homez;
PDBTitle: structure of the third homeodomain from the human homeobox2 and leucine zipper protein, homez
100c2ktgA_



not modelled 79.1 15 PDB header:ca-binding protein
Chain: A: PDB Molecule:calmodulin, putative;
PDBTitle: calmodulin like protein from entamoeba histolytica: solution structure2 and calcium binding properties of a partially folded protein
101d1rp3a2



not modelled 78.6 10 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
102c1or7A_



not modelled 78.5 20 PDB header:transcription
Chain: A: PDB Molecule:rna polymerase sigma-e factor;
PDBTitle: crystal structure of escherichia coli sigmae with the cytoplasmic2 domain of its anti-sigma rsea
103d1avsa_



not modelled 76.5 8 Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
104c3mzyA_



not modelled 74.2 9 PDB header:rna binding protein
Chain: A: PDB Molecule:rna polymerase sigma-h factor;
PDBTitle: the crystal structure of the rna polymerase sigma-h factor from2 fusobacterium nucleatum to 2.5a
105c1rp3G_



not modelled 73.0 10 PDB header:transcription
Chain: G: PDB Molecule:rna polymerase sigma factor sigma-28 (flia);
PDBTitle: cocrystal structure of the flagellar sigma/anti-sigma2 complex, sigma-28/flgm
106d1rioa_



not modelled 71.5 22 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
107c3hugA_



not modelled 71.4 11 PDB header:transcription/membrane protein
Chain: A: PDB Molecule:rna polymerase sigma factor;
PDBTitle: crystal structure of mycobacterium tuberculosis anti-sigma factor rsla2 in complex with -35 promoter binding domain of sigl
108d1bw6a_



not modelled 70.1 15 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Centromere-binding
109d1or7a1



not modelled 69.9 20 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
110c2lfwA_



not modelled 67.9 20 PDB header:signaling protein
Chain: A: PDB Molecule:phyr sigma-like domain;
PDBTitle: nmr structure of the phyrsl-nepr complex from sphingomonas sp. fr1
111c3fmyA_



not modelled 66.0 8 PDB header:dna binding protein
Chain: A: PDB Molecule:hth-type transcriptional regulator mqsa
PDBTitle: structure of the c-terminal domain of the e. coli protein2 mqsa (ygit/b3021)
112d1iufa1



not modelled 63.2 29 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Centromere-binding
113d1l3la1



not modelled 61.2 14 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
114c2o8xA_



not modelled 59.9 12 PDB header:transcription
Chain: A: PDB Molecule:probable rna polymerase sigma-c factor;
PDBTitle: crystal structure of the "-35 element" promoter recognition domain of2 mycobacterium tuberculosis sigc
115c2fjrB_



not modelled 58.9 6 PDB header:transcription regulator
Chain: B: PDB Molecule:repressor protein ci;
PDBTitle: crystal structure of bacteriophage 186
116c3sztB_



not modelled 58.8 18 PDB header:transcription
Chain: B: PDB Molecule:quorum-sensing control repressor;
PDBTitle: quorum sensing control repressor, qscr, bound to n-3-oxo-dodecanoyl-l-2 homoserine lactone
117d1sw8a_



not modelled 58.1 19 Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
118d1g8ia_



not modelled 55.7 29 Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
119c2q1zA_



not modelled 54.9 19 PDB header:transcription
Chain: A: PDB Molecule:rpoe, ecf sige;
PDBTitle: crystal structure of rhodobacter sphaeroides sige in complex with the2 anti-sigma chrr
120d1fsea_



not modelled 54.1 19 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)