Return to main results Retrieve Phyre Job Id

Job DescriptionQ8NFW5
Confidence99.78%DateFri May 25 09:40:17 BST 2012
Rank52Aligned Residues59
% Identity31%Templatec1hf0A_
PDB info PDB header:transcription factorChain: A: PDB Molecule:octamer-binding transcription factor 1; PDBTitle: crystal structure of the dna-binding domain of oct-1 bound2 to dna as a dimer
Resolution2.7 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   70.........80.........90.........100.........110.........120........
Predicted Secondary structure 

















Query SS confidence 


























































Query Sequence  KQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNRRAKFRK
Query Conservation                  
                       
       

 
 
     
Alig confidence 


























































Template Conservation 
 

 

  
  
   

  
  
  

  
   

  
 
    

 

 


 
 

Template Sequence  AERKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFSNRRQKEKR
Template Known Secondary structure 









SS

T

T
Template Predicted Secondary structure 


















Template SS confidence 


























































   74.....80.........90.........100.........110.........120.........130..
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions