Return to main results Retrieve Phyre Job Id

Job DescriptionQ8NFW5
Confidence46.48%DateFri May 25 09:40:17 BST 2012
Rank132Aligned Residues46
% Identity17%Templated1xsva_
SCOP infoDNA/RNA-binding 3-helical bundle Sigma3 and sigma4 domains of RNA polymerase sigma factors YlxM/p13-like
Resolution1.70

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   78.80.........90.........100.........110.........120........
Predicted Secondary structure 









Query SS confidence 


















































Query Sequence  FTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNRRAKFRK
Query Conservation          
                       
       

 
 
     
Alig confidence 
















.....




























Template Conservation 

  

 

 
 
   
.....
  


  



  

   
 

   

 
Template Sequence  LTNKQRNYLELFYLEDY. . . . . SLSEIADTFNVSRQAVYDNIRRTGDLVED
Template Known Secondary structure  S
TS

.....
TT

Template Predicted Secondary structure 




.....



Template SS confidence 


















































   23......30......... 40.........50.........60........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions