PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c2h8rA_

Fold library id	PDB Header	Molecule	Title
c2h8rA_	PDB header: transcription activator/dna	Chain: A: PDB Molecule: hepatocyte nuclear factor 1-beta;	PDBTitle: hepatocyte nuclear factor 1b bound to dna: mody5 gene2 product

Links to external resources
Added to library: Tue Mar 16 12:18:04 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S I L K E L Q A L N T E E A A E Q R A E V D R M L S E D P W R A A K M I K G Y M Q Q H N I P Q R E V V D V T G L N Q S H L S Q H L N K G T P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
T
T
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence M K T Q K R A A L Y T W Y V R K Q R E I L R Q F N Q T V M R R N R F K W G P A S Q Q I L Y Q A Y D R Q K N P S K E E R E A L V E E C N R A E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . .

Sequence C L Q R G V S P S K A H G L G S N L V T E V R V Y N W F A N R R K E E A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S T T G G G G T T S
T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	I	L	K	E	L	Q	A	L	N	T	E	E	A	A	E	Q	R	A	E	V	D	R	M	L	S	E	D	P	W	R	A	A	K	M	I	K	G	Y	M	Q	Q	H	N	I	P	Q	R	E	V	V	D	V	T	G	L	N	Q	S	H	L	S	Q	H	L	N	K	G	T	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																									T	T	S																	T											T											T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	M	K	T	Q	K	R	A	A	L	Y	T	W	Y	V	R	K	Q	R	E	I	L	R	Q	F	N	Q	T	V	M	R	R	N	R	F	K	W	G	P	A	S	Q	Q	I	L	Y	Q	A	Y	D	R	Q	K	N	P	S	K	E	E	R	E	A	L	V	E	E	C	N	R	A	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																							T	T	T	T																										S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Sequence	C	L	Q	R	G	V	S	P	S	K	A	H	G	L	G	S	N	L	V	T	E	V	R	V	Y	N	W	F	A	N	R	R	K	E	E	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T			S	T	T	G	G	G	G	T	T	S																T	T