Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
Descriptionglobin_example
DateSat Sep 6 16:42:08 BST 2014
Unique Job IDca8acc6688d7f918
SequenceSVYDAAAQLT ... Download FASTA
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:39.183 Y:42.907 Z:38.200
Model (left) based on template d3sdha_
Top template information
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
Confidence and coverage
Confidence:100.0% Coverage:100%
145 residues (100% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d3sdha_



100.0 100
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
2d1scta_



100.0 53
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
3c3pt8B_



100.0 24
PDB header:oxygen transport
Chain: B: PDB Molecule:hemoglobin iii;
PDBTitle: structure of hbii-iii-cn from lucina pectinata at ph 5.0
4d1sctb_



100.0 56
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
5c2olpB_



100.0 25
PDB header:oxygen storage/transport
Chain: B: PDB Molecule:hemoglobin ii;
PDBTitle: structure and ligand selection of hemoglobin ii from lucina pectinata
6d1mbaa_



100.0 24
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
7c4b4yA_



100.0 14
PDB header:transport protein
Chain: A: PDB Molecule:neuroglobin;
PDBTitle: crystal structure of the neuroglobin from the photosymbiotic2 marine acoel symsagittifera roscoffensis
8d1hlba_



100.0 24
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
9c1o1nA_



100.0 17
PDB header:oxygen storage/transport
Chain: A: PDB Molecule:hemoglobin alpha chain;
PDBTitle: deoxy hemoglobin (a-glyglygly-c:v1m,l29w; b,d:v1m)
10d1b0ba_



100.0 19
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
11c1x3kA_



100.0 17
PDB header:oxygen storage/transport
Chain: A: PDB Molecule:hemoglobin component v;
PDBTitle: crystal structure of a hemoglobin component (ta-v) from2 tokunagayusurika akamusi
12d2lhba_



100.0 18
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
13c1ut0A_



100.0 23
PDB header:oxygen transport
Chain: A: PDB Molecule:cytoglobin;
PDBTitle: crystal structure of cytoglobin: the fourth globin type2 discovered in man displays heme hexa-coordination
14d1urva_



100.0 23
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
15d1itha_



100.0 17
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
16d1h97a_



100.0 18
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
17c2zs0A_



100.0 16
PDB header:oxygen storage, oxygen transport
Chain: A: PDB Molecule:extracellular giant hemoglobin major globin subunit a1;
PDBTitle: structural basis for the heterotropic and homotropic interactions of2 invertebrate giant hemoglobin
18d1x9fd_



100.0 18
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
19c1yhuW_



100.0 21
PDB header:oxygen storage/transport
Chain: W: PDB Molecule:hemoglobin b1a chain;
PDBTitle: crystal structure of riftia pachyptila c1 hemoglobin reveals novel2 assembly of 24 subunits.
20d1hbga_



100.0 18
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
21d1hlma_



not modelled 100.0 17
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
22c4bjaA_



not modelled 100.0 14
PDB header:transport protein
Chain: A: PDB Molecule:protein glb-12;
PDBTitle: globin-like protein glb-12 from c.elegans
23d1x9fb_



not modelled 100.0 22
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
24c3wctA_



not modelled 100.0 18
PDB header:oxygen transport
Chain: A: PDB Molecule:a1 globin chain of giant v2 hemoglobin;
PDBTitle: the structure of a deoxygenated 400 kda hemoglobin provides a more2 accurate description of the cooperative mechanism of giant3 hemoglobins: oxygenated form
25d1it2a_



not modelled 100.0 13
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
26c1yhuA_



not modelled 100.0 20
PDB header:oxygen storage/transport
Chain: A: PDB Molecule:hemoglobin a1 chain;
PDBTitle: crystal structure of riftia pachyptila c1 hemoglobin reveals novel2 assembly of 24 subunits.
27d1cqxa1



not modelled 100.0 16
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
28c2vywA_



not modelled 100.0 22
PDB header:oxygen binding
Chain: A: PDB Molecule:hemoglobin;
PDBTitle: hemoglobin (hb2) from trematode fasciola hepatica
29d1d8ua_



not modelled 100.0 15
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
30c1yhuX_



not modelled 100.0 18
PDB header:oxygen storage/transport
Chain: X: PDB Molecule:hemoglobin b2 chain;
PDBTitle: crystal structure of riftia pachyptila c1 hemoglobin reveals novel2 assembly of 24 subunits.
31c2c0kB_



not modelled 100.0 16
PDB header:oxygen transport
Chain: B: PDB Molecule:hemoglobin;
PDBTitle: the structure of hemoglobin from the botfly gasterophilus2 intestinalis
32c1yhuJ_



not modelled 100.0 18
PDB header:oxygen storage/transport
Chain: J: PDB Molecule:giant hemoglobins b chain;
PDBTitle: crystal structure of riftia pachyptila c1 hemoglobin reveals novel2 assembly of 24 subunits.
33d1uc3a_



not modelled 100.0 19
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
34d1fsla_



not modelled 100.0 18
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
35d1jl6a_



not modelled 100.0 20
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
36c2d2mB_



not modelled 100.0 18
PDB header:oxygen storage/transport
Chain: B: PDB Molecule:giant hemoglobin, a2(a5) globin chain;
PDBTitle: structure of an extracellular giant hemoglobin of the2 gutless beard worm oligobrachia mashikoi
37d1gvha1



not modelled 100.0 19
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
38c2bk9A_



not modelled 100.0 23
PDB header:oxygen transport
Chain: A: PDB Molecule:cg9734-pa;
PDBTitle: drosophila melanogaster globin
39d1v4wa_



not modelled 100.0 19
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
40d1mwca_



not modelled 100.0 22
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
41d1mbsa_



not modelled 100.0 22
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
42d1x9fc_



not modelled 100.0 23
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
43d2gdma_



not modelled 100.0 14
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
44d2mm1a_



not modelled 100.0 23
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
45d1outa_



not modelled 100.0 20
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
46d1gcva_



not modelled 100.0 20
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
47c3wctD_



not modelled 100.0 19
PDB header:oxygen transport
Chain: D: PDB Molecule:b1 globin chain of giant v2 hemoglobin;
PDBTitle: the structure of a deoxygenated 400 kda hemoglobin provides a more2 accurate description of the cooperative mechanism of giant3 hemoglobins: oxygenated form
48d1jebb_



not modelled 100.0 26
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
49d3d1ka1



not modelled 100.0 18
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
50d1spga_



not modelled 100.0 20
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
51c3bomC_



not modelled 100.0 21
PDB header:oxygen storage/transport
Chain: C: PDB Molecule:hemoglobin subunit alpha-4;
PDBTitle: crystal structure of trout hemoglobin at 1.35 angstrom resolution
52d1a4fa_



not modelled 100.0 16
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
53c1x46A_



not modelled 100.0 19
PDB header:oxygen storage/transport
Chain: A: PDB Molecule:hemoglobin component vii;
PDBTitle: crystal structure of a hemoglobin component (ta-vii) from2 tokunagayusurika akamusi
54d1lhta_



not modelled 100.0 21
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
55d1qpwa_



not modelled 100.0 19
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
56d2v1fa1



not modelled 100.0 19
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
57d1xq5a_



not modelled 100.0 19
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
58c2d2mC_



not modelled 100.0 16
PDB header:oxygen storage/transport
Chain: C: PDB Molecule:giant hemoglobin, b2(c) globin chain;
PDBTitle: structure of an extracellular giant hemoglobin of the2 gutless beard worm oligobrachia mashikoi
59d1cg5a_



not modelled 100.0 23
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
60d1jl7a_



not modelled 100.0 17
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
61d1a6ma_



not modelled 100.0 23
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
62d1q1fa_



not modelled 100.0 17
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
63d2d5xb1



not modelled 100.0 22
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
64d1oj6a_



not modelled 100.0 17
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
65d1x9fa_



not modelled 100.0 18
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
66d1i3da_



not modelled 100.0 23
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
67d2d5xa1



not modelled 100.0 17
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
68d3bj1b1



not modelled 100.0 21
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
69d2dn3b1



not modelled 100.0 23
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
70c3s1jC_



not modelled 100.0 18
PDB header:oxygen transport, oxygen storage
Chain: C: PDB Molecule:hemoglobin-like flavoprotein;
PDBTitle: crystal structure of acetate-bound hell's gate globin i
71d1spgb_



not modelled 100.0 24
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
72d1hbrb_



not modelled 100.0 25
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
73d1outb_



not modelled 99.9 22
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
74d1v4wb_



not modelled 99.9 17
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
75d1fhjb_



not modelled 99.9 25
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
76d1qpwb_



not modelled 99.9 22
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
77c1cqxB_



not modelled 99.9 16
PDB header:lipid binding protein
Chain: B: PDB Molecule:flavohemoprotein;
PDBTitle: crystal structure of the flavohemoglobin from alcaligenes eutrophus at2 1.75 a resolution
78d1fhja_



not modelled 99.9 17
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
79d1cg5b_



not modelled 99.9 21
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
80d2aa1b1



not modelled 99.9 21
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
81d1wmub_



not modelled 99.9 21
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
82d2qfka1



not modelled 99.9 12
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
83d1shrb_



not modelled 99.9 22
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
84d1jeba_



not modelled 99.9 19
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
85d2h8fb1



not modelled 99.9 20
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
86d1ecda_



not modelled 99.9 15
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
87d1hbra_



not modelled 99.9 25
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
88c2zs1D_



not modelled 99.9 17
PDB header:oxygen storage, oxygen transport
Chain: D: PDB Molecule:extracellular giant hemoglobin major globin subunit b1;
PDBTitle: structural basis for the heterotropic and homotropic interactions of2 invertebrate giant hemoglobin
89d3d1kb1



not modelled 99.9 23
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
90d1a4fb_



not modelled 99.9 22
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
91c3wfwA_



not modelled 99.9 14
PDB header:oxygen transport
Chain: A: PDB Molecule:hemoglobin-like flavoprotein fused to roadblock/lc7 domain;
PDBTitle: crystal structure of the closed form of the hgbrl's globin domain
92d1a9we_



not modelled 99.9 23
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
93d1wmua_



not modelled 99.9 20
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
94d1ch4a_



not modelled 99.9 20
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
95c1gvhA_



not modelled 99.9 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:flavohemoprotein;
PDBTitle: the x-ray structure of ferric escherichia coli2 flavohemoglobin reveals an unespected geometry of the3 distal heme pocket
96d1myta_



not modelled 99.9 21
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
97d2dn3a1



not modelled 99.9 17
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
98d2qssa1



not modelled 99.9 20
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
99c2wy4A_



not modelled 99.9 14
PDB header:oxygen transport
Chain: A: PDB Molecule:single domain haemoglobin;
PDBTitle: structure of bacterial globin from campylobacter jejuni at2 1.35 a resolution
100d2qssb1



not modelled 99.9 23
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
101d1vhba_



not modelled 99.9 18
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
102c4g1bB_



not modelled 99.9 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:flavohemoglobin;
PDBTitle: x-ray structure of yeast flavohemoglobin in complex with econazole
103c2wtgA_



not modelled 99.9 16
PDB header:oxygen transport
Chain: A: PDB Molecule:globin-like protein;
PDBTitle: high resolution 3d structure of c.elegans globin-like2 protein glb-1
104d1gcvb_



not modelled 99.9 19
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
105c3qqrA_



not modelled 99.9 16
PDB header:oxygen transport
Chain: A: PDB Molecule:non-legume hemoglobin;
PDBTitle: crystal structure of parasponia hemoglobin; differential heme2 coordination is linked to quaternary structure
106d1emya_



not modelled 99.9 19
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
107d1hdsa_



not modelled 99.9 18
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
108d1asha_



not modelled 99.9 10
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
109c3mkbD_



not modelled 99.9 18
PDB header:oxygen storage, oxygen transport
Chain: D: PDB Molecule:hemoglobin subunit beta;
PDBTitle: crystal structure determination of shortfin mako (isurus oxyrinchus)2 hemoglobin at 1.9 angstrom resolution
110c3mvcB_



not modelled 99.9 13
PDB header:electron transport
Chain: B: PDB Molecule:globin protein 6;
PDBTitle: high resolution crystal structure of the heme domain of glb-6 from c.2 elegans
111d1hdsb_



not modelled 99.9 22
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
112d1tu9a_



not modelled 99.8 11
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
113d1kr7a_



not modelled 99.8 16
Fold:Globin-like
Superfamily:Globin-like
Family:Nerve tissue mini-hemoglobin (neural globin)
114c2w31A_



not modelled 99.2 10
PDB header:oxygen transport
Chain: A: PDB Molecule:globin;
PDBTitle: globin domain of geobacter sulfurreducens globin-coupled2 sensor
115d1or4a_



not modelled 98.6 11
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
116c2veeC_



not modelled 98.1 14
PDB header:transport protein
Chain: C: PDB Molecule:protoglobin;
PDBTitle: structure of protoglobin from methanosarcina acetivorans2 c2a
117d1ux8a_



not modelled 97.9 7
Fold:Globin-like
Superfamily:Globin-like
Family:Truncated hemoglobin
118d1ngka_



not modelled 97.1 13
Fold:Globin-like
Superfamily:Globin-like
Family:Truncated hemoglobin
119c2xykB_



not modelled 97.0 10
PDB header:oxygen storage/transport
Chain: B: PDB Molecule:2-on-2 hemoglobin;
PDBTitle: group ii 2-on-2 hemoglobin from the plant pathogen2 agrobacterium tumefaciens
120c2bmmA_



not modelled 96.9 8
PDB header:oxygen storage/transport
Chain: A: PDB Molecule:thermostable hemoglobin from thermobifida fusca;
PDBTitle: x-ray structure of a novel thermostable hemoglobin from the2 actinobacterium thermobifida fusca

Binding site prediction 

The top ranking model of your protein (d3sdha_ 100.0% confidence) has been submitted to the 3DLigandSite server to predict potential binding sites.

Results will appear here when complete