PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3wctD_

Fold library id	PDB Header	Molecule	Title
c3wctD_	PDB header: oxygen transport	Chain: D: PDB Molecule: b1 globin chain of giant v2 hemoglobin;	PDBTitle: the structure of a deoxygenated 400 kda hemoglobin provides a more2 accurate description of the cooperative mechanism of giant3 hemoglobins: oxygenated form

Links to external resources
Added to library: Sat Jun 7 08:14:19 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence F C S E A D A T I V I K Q W N Q I Y N A G I G A K S R W T M G N E I F S S L F K L K P E S E V L F N N V N V A N M S S G A F H A H T V R V L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T S
G G G G G G G G G G T T T
T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S G L D M G I N Y L N D A G T L T S L T A H L A A Q H V A R T G L K A V Y F D A M G K V L M T V L P S L I D N F N P D A W R N C L L P L K N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T
S S T T
S T T

. . . . . . .

Sequence A I A K G L P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	F	C	S	E	A	D	A	T	I	V	I	K	Q	W	N	Q	I	Y	N	A	G	I	G	A	K	S	R	W	T	M	G	N	E	I	F	S	S	L	F	K	L	K	P	E	S	E	V	L	F	N	N	V	N	V	A	N	M	S	S	G	A	F	H	A	H	T	V	R	V	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																			S	T	T	S																					G	G	G	G	G	G	G	G	G	G	T	T	T		T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	G	L	D	M	G	I	N	Y	L	N	D	A	G	T	L	T	S	L	T	A	H	L	A	A	Q	H	V	A	R	T	G	L	K	A	V	Y	F	D	A	M	G	K	V	L	M	T	V	L	P	S	L	I	D	N	F	N	P	D	A	W	R	N	C	L	L	P	L	K	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T	T	T																		S	S	T	T																					S	T	T
	.	.	.	.	.	.	.
Sequence	A	I	A	K	G	L	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	S	S