Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionC6Y4C0
DateSun Jul 8 11:45:08 BST 2012
Unique Job ID187c564f4c58c56f

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2f3jA_
Top template information
PDB header:transport protein
Chain: A: PDB Molecule:rna and export factor binding protein 2;
PDBTitle: the solution structure of the ref2-i mrna export factor2 (residues 1-155).
Confidence and coverage
Confidence: 99.9% Coverage: 89%
99 residues ( 89% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSNAPSNTPTGFNYKPGHTLYIRNFGTDMRARTLGQAFEKWGRIVRCDIPISSNPQAHRY
Secondary structure 



































SS confidence 



























































Disorder  ??????????????????









































Disorder confidence 



























































 
   .........70.........80.........90.........100.........110.
Sequence  AFVEFEEREKAELAHEKMRNAKIGNDIIFVEWAKSRERYHRDDKRRLSNYA
Secondary structure 















SS confidence 


















































Disorder 


















?












???????????


????
Disorder confidence 


















































 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2f3j chain A

3D model

Region: 2 - 100
Aligned: 99
Modelled: 99
Confidence: 99.9%
Identity: 15%
PDB header:transport protein
Chain: A: PDB Molecule:rna and export factor binding protein 2;
PDBTitle: the solution structure of the ref2-i mrna export factor2 (residues 1-155).

Phyre2

PDB 1hl6 chain A

3D model

Region: 3 - 96
Aligned: 94
Modelled: 94
Confidence: 99.9%
Identity: 20%
Fold: Ferredoxin-like
Superfamily: RNA-binding domain, RBD
Family: Canonical RBD

Phyre2

PDB 2i38 chain A

3D model

Region: 2 - 98
Aligned: 93
Modelled: 97
Confidence: 99.8%
Identity: 22%
PDB header:rna binding protein/chimera
Chain: A: PDB Molecule:fusion protein consists of immunoglobin g-
PDBTitle: solution structure of the rrm of srp20

Phyre2

PDB 2ku7 chain A

3D model

Region: 2 - 93
Aligned: 92
Modelled: 91
Confidence: 99.8%
Identity: 25%
PDB header:transcription
Chain: A: PDB Molecule:mll1 phd3-cyp33 rrm chimeric protein;
PDBTitle: solution structure of mll1 phd3-cyp33 rrm chimeric protein

Phyre2

PDB 2do0 chain A

3D model

Region: 3 - 101
Aligned: 99
Modelled: 99
Confidence: 99.8%
Identity: 16%
PDB header:rna binding protein
Chain: A: PDB Molecule:heterogeneous nuclear ribonucleoprotein m;
PDBTitle: solution structure of the rna binding domain of2 heterogeneous nuclear ribonucleoprotein m

Phyre2

PDB 2kn4 chain A

3D model

Region: 3 - 97
Aligned: 95
Modelled: 95
Confidence: 99.8%
Identity: 23%
PDB header:rna binding protein
Chain: A: PDB Molecule:immunoglobulin g-binding protein g, splicing factor;
PDBTitle: the structure of the rrm domain of sc35

Phyre2

PDB 3s8s chain A

3D model

Region: 15 - 109
Aligned: 95
Modelled: 95
Confidence: 99.8%
Identity: 13%
PDB header:transcription
Chain: A: PDB Molecule:histone-lysine n-methyltransferase setd1a;
PDBTitle: crystal structure of the rrm domain of human setd1a

Phyre2

PDB 1h2t chain Z

3D model

Region: 15 - 106
Aligned: 92
Modelled: 92
Confidence: 99.8%
Identity: 23%
Fold: Ferredoxin-like
Superfamily: RNA-binding domain, RBD
Family: Canonical RBD

Phyre2

PDB 1n54 chain B

3D model

Region: 15 - 102
Aligned: 88
Modelled: 88
Confidence: 99.8%
Identity: 23%
Fold: Ferredoxin-like
Superfamily: RNA-binding domain, RBD
Family: Canonical RBD

Phyre2

PDB 2e5j chain A

3D model

Region: 2 - 99
Aligned: 93
Modelled: 98
Confidence: 99.8%
Identity: 22%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:methenyltetrahydrofolate synthetase domain
PDBTitle: solution structure of rna binding domain in2 methenyltetrahydrofolate synthetase domain containing

Phyre2

PDB 3egn chain A

3D model

Region: 15 - 97
Aligned: 83
Modelled: 83
Confidence: 99.8%
Identity: 17%
PDB header:splicing
Chain: A: PDB Molecule:rna-binding protein 40;
PDBTitle: c-terminal rna recognition motif of the u11/u12 65k protein

Phyre2

PDB 1u6f chain A domain 1

3D model

Region: 6 - 100
Aligned: 95
Modelled: 95
Confidence: 99.8%
Identity: 23%
Fold: Ferredoxin-like
Superfamily: RNA-binding domain, RBD
Family: Canonical RBD

Phyre2

PDB 2rne chain A

3D model

Region: 3 - 106
Aligned: 104
Modelled: 104
Confidence: 99.8%
Identity: 16%
PDB header:rna binding protein
Chain: A: PDB Molecule:tia1 protein;
PDBTitle: solution structure of the second rna recognition motif2 (rrm) of tia-1

Phyre2

PDB 3pgw chain S

3D model

Region: 5 - 96
Aligned: 92
Modelled: 92
Confidence: 99.8%
Identity: 22%
PDB header:splicing/dna/rna
Chain: S: PDB Molecule:u1-70k;
PDBTitle: crystal structure of human u1 snrnp

Phyre2

PDB 2cpx chain A domain 1

3D model

Region: 3 - 100
Aligned: 98
Modelled: 98
Confidence: 99.8%
Identity: 18%
Fold: Ferredoxin-like
Superfamily: RNA-binding domain, RBD
Family: Canonical RBD

Phyre2

PDB 2do4 chain A

3D model

Region: 2 - 98
Aligned: 97
Modelled: 97
Confidence: 99.8%
Identity: 21%
PDB header:immune system
Chain: A: PDB Molecule:squamous cell carcinoma antigen recognized by t-
PDBTitle: solution structure of the rna binding domain of squamous2 cell carcinoma antigen recognized by t cells 3

Phyre2

PDB 1fje chain B domain 1

3D model

Region: 6 - 96
Aligned: 90
Modelled: 91
Confidence: 99.8%
Identity: 21%
Fold: Ferredoxin-like
Superfamily: RNA-binding domain, RBD
Family: Canonical RBD

Phyre2

PDB 2cpz chain A domain 1

3D model

Region: 2 - 100
Aligned: 99
Modelled: 99
Confidence: 99.8%
Identity: 18%
Fold: Ferredoxin-like
Superfamily: RNA-binding domain, RBD
Family: Canonical RBD

Phyre2

PDB 1fj7 chain A

3D model

Region: 2 - 101
Aligned: 99
Modelled: 100
Confidence: 99.8%
Identity: 19%
Fold: Ferredoxin-like
Superfamily: RNA-binding domain, RBD
Family: Canonical RBD

Phyre2

PDB 1wi8 chain A

3D model

Region: 3 - 105
Aligned: 102
Modelled: 103
Confidence: 99.8%
Identity: 15%
Fold: Ferredoxin-like
Superfamily: RNA-binding domain, RBD
Family: Canonical RBD

Phyre2
1

c2f3jA_
2

d1hl6a_
3

c2i38A_
4

c2ku7A_
5

c2do0A_
6

c2kn4A_
7

c3s8sA_
8

d1h2tz_
9

d1n54b_
10

c2e5jA_
11

c3egnA_
12

d1u6fa1
13

c2rneA_
14

c3pgwS_
15

d2cpxa1
16

c2do4A_
17

d1fjeb1
18

d2cpza1
19

d1fj7a_
20

d1wi8a_
21



22



23



24



25



26



27



28



29



30



31



32



33



34



35



36



37



38



39



40



41



42



43



44



45



46



47



48



49



50



51



52



53



54



55



56



57



58



59



60



61



62



63



64



65



66



67



68



69



70



71



72



73



74



75



76



77



78



79



80



81



82



83



84



85



86



87



88



89



90



91



92



93



94



95



96



97



98



99



100



101



102



103



104



105



106



107



108



109



110



111



112



113



114



115



116



117



118



119



120



121



122



123



124



125



126



127



128



129



130



131



132



133



134



135



136



137



138



139



140



141



142



143



144



145



146



147



148



149



150



151



152



153



154



155



156



157



158



159



160



161



162



163



164



165



166



167



168



169



170



171



172



173



174



175



176



177



178



179



180



181



182



183



184



185



186



187



188



189



190



191



192



193



194



195



196



197



198



199



200



201



202



203



204



205



206



207



208



209



210



211



212



213



214



215



216



217



218



219



220



221



222



223



224



225



226



227



228



229



230



231



232



233



234



235



236



237



238



239



240






Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2f3jA_



99.9 15 PDB header:transport protein
Chain: A: PDB Molecule:rna and export factor binding protein 2;
PDBTitle: the solution structure of the ref2-i mrna export factor2 (residues 1-155).
2d1hl6a_



99.9 20 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
3c2i38A_



99.8 22 PDB header:rna binding protein/chimera
Chain: A: PDB Molecule:fusion protein consists of immunoglobin g-
PDBTitle: solution structure of the rrm of srp20
4c2ku7A_



99.8 25 PDB header:transcription
Chain: A: PDB Molecule:mll1 phd3-cyp33 rrm chimeric protein;
PDBTitle: solution structure of mll1 phd3-cyp33 rrm chimeric protein
5c2do0A_



99.8 16 PDB header:rna binding protein
Chain: A: PDB Molecule:heterogeneous nuclear ribonucleoprotein m;
PDBTitle: solution structure of the rna binding domain of2 heterogeneous nuclear ribonucleoprotein m
6c2kn4A_



99.8 23 PDB header:rna binding protein
Chain: A: PDB Molecule:immunoglobulin g-binding protein g, splicing factor;
PDBTitle: the structure of the rrm domain of sc35
7c3s8sA_



99.8 13 PDB header:transcription
Chain: A: PDB Molecule:histone-lysine n-methyltransferase setd1a;
PDBTitle: crystal structure of the rrm domain of human setd1a
8d1h2tz_



99.8 23 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
9d1n54b_



99.8 23 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
10c2e5jA_



99.8 22 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:methenyltetrahydrofolate synthetase domain
PDBTitle: solution structure of rna binding domain in2 methenyltetrahydrofolate synthetase domain containing
11c3egnA_



99.8 17 PDB header:splicing
Chain: A: PDB Molecule:rna-binding protein 40;
PDBTitle: c-terminal rna recognition motif of the u11/u12 65k protein
12d1u6fa1



99.8 23 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
13c2rneA_



99.8 16 PDB header:rna binding protein
Chain: A: PDB Molecule:tia1 protein;
PDBTitle: solution structure of the second rna recognition motif2 (rrm) of tia-1
14c3pgwS_



99.8 22 PDB header:splicing/dna/rna
Chain: S: PDB Molecule:u1-70k;
PDBTitle: crystal structure of human u1 snrnp
15d2cpxa1



99.8 18 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
16c2do4A_



99.8 21 PDB header:immune system
Chain: A: PDB Molecule:squamous cell carcinoma antigen recognized by t-
PDBTitle: solution structure of the rna binding domain of squamous2 cell carcinoma antigen recognized by t cells 3
17d1fjeb1



99.8 21 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
18d2cpza1



99.8 18 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
19d1fj7a_



99.8 19 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
20d1wi8a_



99.8 15 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
21d1whwa_



not modelled 99.8 18 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
22d1whxa_



not modelled 99.8 22 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
23d1h2vz_



not modelled 99.8 23 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
24d1fjca_



not modelled 99.8 19 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
25d1b7fa1



not modelled 99.8 23 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
26c2lcwA_



not modelled 99.8 16 PDB header:rna binding protein
Chain: A: PDB Molecule:rna-binding protein fus;
PDBTitle: solution structure of fus/tls rrm domain
27c2dnoA_



not modelled 99.8 15 PDB header:rna binding protein
Chain: A: PDB Molecule:trinucleotide repeat containing 4 variant;
PDBTitle: solution structure of rna binding domain in trinucleotide2 repeat containing 4 variant
28c2fy1A_



not modelled 99.8 21 PDB header:structural protein/rna
Chain: A: PDB Molecule:rna-binding motif protein, y chromosome, family
PDBTitle: a dual mode of rna recognition by the rbmy protein
29c2x1aA_



not modelled 99.8 14 PDB header:transcription/rna
Chain: A: PDB Molecule:mrna 3'-end-processing protein rna15;
PDBTitle: structure of rna15 rrm with rna bound (g)
30c3ex7B_



not modelled 99.8 19 PDB header:hydrolase/rna binding protein/rna
Chain: B: PDB Molecule:rna-binding protein 8a;
PDBTitle: the crystal structure of ejc in its transition state
31d1fxla1



not modelled 99.8 20 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
32c3sdeB_



not modelled 99.8 23 PDB header:rna binding protein
Chain: B: PDB Molecule:non-pou domain-containing octamer-binding protein;
PDBTitle: crystal structure of a paraspeckle-protein heterodimer, pspc1/nono
33d2cqba1



not modelled 99.8 26 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
34d2cqia1



not modelled 99.8 26 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
35d2cpea1



not modelled 99.8 13 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
36d2cq0a1



not modelled 99.8 27 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
37d1x5ua1



not modelled 99.8 24 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
38d2j0sd1



not modelled 99.8 18 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
39d1rk8a_



not modelled 99.8 22 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
40c2jwnB_



not modelled 99.8 23 PDB header:rna binding protein
Chain: B: PDB Molecule:embryonic polyadenylate-binding protein 2-b;
PDBTitle: solution nmr structure of the protease-resistent domain of2 xenopus laevis epabp2
41c2ywkA_



not modelled 99.8 18 PDB header:rna binding protein
Chain: A: PDB Molecule:putative rna-binding protein 11;
PDBTitle: crystal structure of rrm-domain derived from human putative2 rna-binding protein 11
42c2dngA_



not modelled 99.8 15 PDB header:translation
Chain: A: PDB Molecule:eukaryotic translation initiation factor 4h;
PDBTitle: solution structure of rna binding domain in eukaryotic2 translation initiation factor 4h
43d2cqga1



not modelled 99.8 12 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
44d1cvja1



not modelled 99.8 22 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
45d2cq3a1



not modelled 99.8 23 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
46c2e44A_



not modelled 99.8 14 PDB header:rna binding protein
Chain: A: PDB Molecule:insulin-like growth factor 2 mrna binding
PDBTitle: solution structure of rna binding domain in insulin-like2 growth factor 2 mrna binding protein 3
47d1x4ha1



not modelled 99.8 20 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
48c2dnmA_



not modelled 99.8 27 PDB header:rna binding protein
Chain: A: PDB Molecule:srp46 splicing factor;
PDBTitle: solution structure of rna binding domain in srp46 splicing2 factor
49d2cqda1



not modelled 99.8 16 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
50d2up1a2



not modelled 99.8 16 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
51d1x5sa1



not modelled 99.8 21 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
52d2cq4a1



not modelled 99.8 17 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
53d1fnxh1



not modelled 99.8 20 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
54d1nu4a_



not modelled 99.8 26 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
55c2e5hA_



not modelled 99.8 20 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:zinc finger cchc-type and rna-binding motif-
PDBTitle: solution structure of rna binding domain in zinc finger2 cchc-type and rna binding motif 1
56d2cpha1



not modelled 99.8 17 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
57c3bs9A_



not modelled 99.8 22 PDB header:rna binding protein
Chain: A: PDB Molecule:nucleolysin tia-1 isoform p40;
PDBTitle: x-ray structure of human tia-1 rrm2
58c2dnzA_



not modelled 99.8 19 PDB header:rna binding protein
Chain: A: PDB Molecule:probable rna-binding protein 23;
PDBTitle: solution structure of the second rna binding domain of rna2 binding motif protein 23
59d1fnxh2



not modelled 99.8 22 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
60d2f9da1



not modelled 99.8 20 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
61d1wf1a_



not modelled 99.8 17 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
62c2kxnB_



not modelled 99.8 23 PDB header:rna binding protein/rna
Chain: B: PDB Molecule:transformer-2 protein homolog beta;
PDBTitle: nmr structure of human tra2beta1 rrm in complex with aagaac rna
63c3md1B_



not modelled 99.8 18 PDB header:rna binding protein
Chain: B: PDB Molecule:nuclear and cytoplasmic polyadenylated rna-binding protein
PDBTitle: crystal structure of the second rrm domain of yeast poly(u)-binding2 protein (pub1)
64d2u2fa_



not modelled 99.8 16 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
65d2adca1



not modelled 99.8 17 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
66d2erra1



not modelled 99.8 26 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
67c2dgpA_



not modelled 99.8 25 PDB header:rna binding protein
Chain: A: PDB Molecule:bruno-like 4, rna binding protein;
PDBTitle: solution structure of the n-terminal rna binding domain in2 bruno-like 4 rna-binding protein
68d2cpda1



not modelled 99.8 22 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
69d1no8a_



not modelled 99.8 14 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
70c1no8A_



not modelled 99.8 14 PDB header:rna binding protein
Chain: A: PDB Molecule:aly;
PDBTitle: solution structure of the nuclear factor aly rbd domain
71c2dhgA_



not modelled 99.8 15 PDB header:rna binding protein
Chain: A: PDB Molecule:trna selenocysteine associated protein (secp43);
PDBTitle: solution structure of the c-terminal rna recognition motif2 in trna selenocysteine associated protein
72c4a8xA_



not modelled 99.8 21 PDB header:transcription
Chain: A: PDB Molecule:rna-binding protein with serine-rich domain 1;
PDBTitle: structure of the core asap complex
73c2la6A_



not modelled 99.8 15 PDB header:rna binding protein
Chain: A: PDB Molecule:rna-binding protein fus;
PDBTitle: solution nmr structure of rrm domain of rna-binding protein fus from2 homo sapiens, northeast structural genomics consortium target hr6430a
74c2fc9A_



not modelled 99.8 23 PDB header:rna binding protein
Chain: A: PDB Molecule:ncl protein;
PDBTitle: solution structure of the rrm_1 domain of ncl protein
75d1wexa_



not modelled 99.8 17 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
76c2dgsA_



not modelled 99.8 15 PDB header:rna binding protein
Chain: A: PDB Molecule:daz-associated protein 1;
PDBTitle: solution structure of the second rna binding domain in daz-2 associated protein 1
77c2fc8A_



not modelled 99.8 21 PDB header:rna binding protein
Chain: A: PDB Molecule:ncl protein;
PDBTitle: solution structure of the rrm_1 domain of ncl protein
78c2dguA_



not modelled 99.8 22 PDB header:rna binding protein
Chain: A: PDB Molecule:heterogeneous nuclear ribonucleoprotein q;
PDBTitle: solution structure of the rna binding domain in2 heterogeneous nuclear ribonucleoprotein q
79d1x4aa1



not modelled 99.8 23 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
80d1fjeb2



not modelled 99.8 19 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
81c2dgtA_



not modelled 99.8 27 PDB header:rna binding protein
Chain: A: PDB Molecule:rna-binding protein 30;
PDBTitle: solution structure of the second rna binding domain in rna-2 binding protein 30
82c3pgwP_



not modelled 99.8 24 PDB header:splicing/dna/rna
Chain: P: PDB Molecule:u1-a;
PDBTitle: crystal structure of human u1 snrnp
83c3cw18_



not modelled 99.8 24 PDB header:splicing
Chain: 8: PDB Molecule:u1 small nuclear ribonucleoprotein 70 kda;
PDB Fragment:nucleotides 57-82 absent, replaced with kissing loop; PDBTitle: crystal structure of human spliceosomal u1 snrnp
84c2d9pA_



not modelled 99.8 18 PDB header:rna binding protein
Chain: A: PDB Molecule:polyadenylate-binding protein 3;
PDBTitle: solution structure of rna binding domain 4 in2 polyadenylation binding protein 3
85d2ghpa3



not modelled 99.8 30 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
86d1cvja2



not modelled 99.8 29 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
87d1x4ga1



not modelled 99.8 19 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
88d1x4ba1



not modelled 99.8 18 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
89c2divA_



not modelled 99.8 16 PDB header:rna binding protein
Chain: A: PDB Molecule:trna selenocysteine associated protein;
PDBTitle: solution structure of the rrm domain of trna selenocysteine2 associated protein
90c2rs2A_



not modelled 99.8 13 PDB header:rna binding protein/rna
Chain: A: PDB Molecule:rna-binding protein musashi homolog 1;
PDBTitle: 1h, 13c, and 15n chemical shift assignments for musashi1 rbd1:r(guagu)2 complex
91d1sxla_



not modelled 99.8 24 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
92d1x5oa1



not modelled 99.8 16 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
93d2k3ka1



not modelled 99.8 22 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
94c2dh9A_



not modelled 99.8 23 PDB header:rna binding protein
Chain: A: PDB Molecule:heterogeneous nuclear ribonucleoprotein m;
PDBTitle: solution structure of the c-terminal rna binding domain in2 heterogeneous nuclear ribonucleoprotein m
95d1zh5a2



not modelled 99.8 18 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
96c2la4A_



not modelled 99.8 19 PDB header:rna binding protein
Chain: A: PDB Molecule:nuclear and cytoplasmic polyadenylated rna-binding protein
PDBTitle: nmr structure of the c-terminal rrm domain of poly(u) binding 1
97c2ytcA_



not modelled 99.8 25 PDB header:transcription
Chain: A: PDB Molecule:pre-mrna-splicing factor rbm22;
PDBTitle: solution structure of rna binding domain in pre-mrna-2 splicing factor rbm22
98d2cqpa1



not modelled 99.8 14 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
99c3q2tC_



not modelled 99.7 16 PDB header:rna binding protein/rna
Chain: C: PDB Molecule:cleavage and polyadenylation specificity factor subunit 6;
PDBTitle: crystal structure of cfim68 rrm/cfim25/rna complex
100d2ghpa1



not modelled 99.7 18 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
101d1l3ka1



not modelled 99.7 20 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
102c2a3jA_



not modelled 99.7 16 PDB header:rna binding protein
Chain: A: PDB Molecule:u1 small nuclear ribonucleoprotein a;
PDBTitle: structure of urndesign, a complete computational redesign2 of human u1a protein
103c2dgxA_



not modelled 99.7 22 PDB header:rna binding protein
Chain: A: PDB Molecule:kiaa0430 protein;
PDBTitle: solution structure of the rna recognition motif in kiaa04302 protein
104d1fhta_



not modelled 99.7 23 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
105d2adca2



not modelled 99.7 21 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
106c2e5iA_



not modelled 99.7 21 PDB header:gene regulation
Chain: A: PDB Molecule:heterogeneous nuclear ribonucleoprotein l-like;
PDBTitle: solution structure of rna binding domain 2 in heterogeneous2 nuclear ribonucleoprotein l-like
107d1fxla2



not modelled 99.7 26 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
108d1oiaa_



not modelled 99.7 24 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
109d1whya_



not modelled 99.7 23 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
110d1a9nb_



not modelled 99.7 22 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
111d1x5ta1



not modelled 99.7 22 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
112d2b0ga1



not modelled 99.7 21 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
113d1p1ta_



not modelled 99.7 15 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
114d1wf2a_



not modelled 99.7 17 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
115d1h6kx_



not modelled 99.7 23 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
116d1auda_



not modelled 99.7 25 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
117d1l3ka2



not modelled 99.7 17 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
118d2msta_



not modelled 99.7 16 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
119c2dgwA_



not modelled 99.7 20 PDB header:rna binding protein
Chain: A: PDB Molecule:probable rna-binding protein 19;
PDBTitle: solution structure of the second rna recognition motif in2 rna-binding protein 19
120d2bz2a1



not modelled 99.7 26 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite