PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3sdeB_

Fold library id	PDB Header	Molecule	Title
c3sdeB_	PDB header: rna binding protein	Chain: B: PDB Molecule: non-pou domain-containing octamer-binding protein;	PDBTitle: crystal structure of a paraspeckle-protein heterodimer, pspc1/nono

Links to external resources
Added to library: Sat Mar 17 13:49:27 2012

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G E K T F T Q R S R L F V G N L P P D I T E E E M R K L F E K Y G K A G E V F I H K D K G F G F I R L E T R T L A E I A K V E L D N M P L R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
G G G S
T T
G G G S
T T T T S S T T
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G K Q L R V R F A C H S A S L T V R N L P Q Y V S N E L L E E A F S V F G Q V E R A V V I V D D R G R P S G K G I V E F S G K P A A R K A L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T S
T T
T T S S
T T S
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence D R C S E G S F L L T T F P R P V T V E P M D Q L D D E E G L P E K L V I K N Q Q F H K E R E Q P P R F A Q P G S F E Y E Y A M R W K A L I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S S S S
S S
G G G S
S T S S
S
T T S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . .

Sequence E M E K Q Q Q D Q V D R N I K E A R E K L E M E M E A A R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	E	K	T	F	T	Q	R	S	R	L	F	V	G	N	L	P	P	D	I	T	E	E	E	M	R	K	L	F	E	K	Y	G	K	A	G	E	V	F	I	H	K	D	K	G	F	G	F	I	R	L	E	T	R	T	L	A	E	I	A	K	V	E	L	D	N	M	P	L	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S		G	G	G						S			T	T											G	G	G	S									T	T	T	T							S	S												T	T				T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	K	Q	L	R	V	R	F	A	C	H	S	A	S	L	T	V	R	N	L	P	Q	Y	V	S	N	E	L	L	E	E	A	F	S	V	F	G	Q	V	E	R	A	V	V	I	V	D	D	R	G	R	P	S	G	K	G	I	V	E	F	S	G	K	P	A	A	R	K	A	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T											T	T						S			T	T											T	T	S	S											T	T	S											S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	D	R	C	S	E	G	S	F	L	L	T	T	F	P	R	P	V	T	V	E	P	M	D	Q	L	D	D	E	E	G	L	P	E	K	L	V	I	K	N	Q	Q	F	H	K	E	R	E	Q	P	P	R	F	A	Q	P	G	S	F	E	Y	E	Y	A	M	R	W	K	A	L	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S				S	S	S	S															S	S				G	G	G	S			S							T	S	S		S					T	T	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Sequence	E	M	E	K	Q	Q	Q	D	Q	V	D	R	N	I	K	E	A	R	E	K	L	E	M	E	M	E	A	A	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)