Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	K	A	G	L	L	F	L	V	M	I	V	I	A	V	V	A	A	G	I	G	Y	W	K	L	T	G	E	E	S	D	T	L	R	K	I	V	L	E	E	C	L	P	N	Q	Q	Q	N	Q	N	P	S	P	C	A	E	V	K	P
Secondary structure
SS confidence
Disorder		?	?	?	?																	?	?																						?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		N	A	G	Y	V	V	L	K	D	L	N	G	P	L	Q	Y	L	L	M	P	T	Y	R	I	N	G	T	E	S	P	L	L	T	D	P	S	T	P	N	F	F	W	L	A	W	Q	A	R	D	F	M	S	K	K	Y	G	Q	P	V	P
Secondary structure
SS confidence
Disorder																								?	?						?		?	?	?		?																							?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		D	R	A	V	S	L	A	I	N	S	R	T	G	R	T	Q	N	H	F	H	I	H	I	S	C	I	R	P	D	V	R	K	Q	L	D	N	N	L	A	N	I	S	S	R	W	L	P	L	P	G	G	L	R	G	H	E	Y	L	A	R
Secondary structure
SS confidence
Disorder		?												?		?																							?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		R	V	T	E	S	E	L	V	Q	R	S	P	F	M	M	L	A	E	E	V	P	E	A	R	E	H	M	G	R	Y	G	L	A	M	V	R	Q	S	D	N	S	F	V	L	L	A	T	Q	R	N	L	L	T	L	N	R	A	S	A	E
Secondary structure
SS confidence
Disorder								?	?	?	?											?	?	?	?	?		?																					?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.
Sequence		E	I	Q	D	H	Q	C	E	I	L	R
Secondary structure
SS confidence
Disorder				?		?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2pof chain A domain 1 Region: 31 - 250 Aligned: 220 Modelled: 220 Confidence: 100.0% Identity: 96% Fold: HIT-like Superfamily: HIT-like Family: CDH-like Phyre2 PDB 3n1t chain E Region: 42 - 143 Aligned: 98 Modelled: 102 Confidence: 96.2% Identity: 12% PDB header:hydrolase Chain: E: PDB Molecule:hit-like protein hint; PDBTitle: crystal structure of the h101a mutant echint gmp complex Phyre2 PDB 1xqu chain A Region: 40 - 143 Aligned: 100 Modelled: 104 Confidence: 95.9% Identity: 16% PDB header:hydrolase Chain: A: PDB Molecule:hit family hydrolase; PDBTitle: hit family hydrolase from clostridium thermocellum cth-393 Phyre2 PDB 1xqu chain A Region: 40 - 143 Aligned: 100 Modelled: 104 Confidence: 95.9% Identity: 16% Fold: HIT-like Superfamily: HIT-like Family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins Phyre2 PDB 1ems chain B Region: 54 - 143 Aligned: 84 Modelled: 90 Confidence: 95.9% Identity: 17% PDB header:antitumor protein Chain: B: PDB Molecule:nit-fragile histidine triad fusion protein; PDBTitle: crystal structure of the c. elegans nitfhit protein Phyre2 PDB 1ems chain A domain 1 Region: 49 - 143 Aligned: 89 Modelled: 95 Confidence: 95.8% Identity: 15% Fold: HIT-like Superfamily: HIT-like Family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins Phyre2 PDB 3ano chain A Region: 34 - 143 Aligned: 103 Modelled: 109 Confidence: 95.7% Identity: 14% PDB header:transferase Chain: A: PDB Molecule:ap-4-a phosphorylase; PDBTitle: crystal structure of a novel diadenosine 5',5'''-p1,p4-tetraphosphate2 phosphorylase from mycobacterium tuberculosis h37rv Phyre2 PDB 1rzy chain A Region: 40 - 143 Aligned: 97 Modelled: 104 Confidence: 95.5% Identity: 12% Fold: HIT-like Superfamily: HIT-like Family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins Phyre2 PDB 3lb5 chain B Region: 39 - 143 Aligned: 98 Modelled: 105 Confidence: 95.4% Identity: 13% PDB header:cell cycle Chain: B: PDB Molecule:hit-like protein involved in cell-cycle regulation; PDBTitle: crystal structure of hit-like protein involved in cell-cycle2 regulation from bartonella henselae with unknown ligand Phyre2 PDB 1kpf chain A Region: 42 - 143 Aligned: 95 Modelled: 102 Confidence: 95.4% Identity: 14% Fold: HIT-like Superfamily: HIT-like Family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins Phyre2 PDB 3oj7 chain A Region: 50 - 143 Aligned: 89 Modelled: 94 Confidence: 95.1% Identity: 24% PDB header:metal binding protein Chain: A: PDB Molecule:putative histidine triad family protein; PDBTitle: crystal structure of a histidine triad family protein from entamoeba2 histolytica, bound to sulfate Phyre2 PDB 1fit chain A Region: 54 - 143 Aligned: 84 Modelled: 90 Confidence: 94.9% Identity: 15% Fold: HIT-like Superfamily: HIT-like Family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins Phyre2 PDB 3ksv chain A Region: 39 - 143 Aligned: 98 Modelled: 105 Confidence: 94.3% Identity: 17% PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: hypothetical protein from leishmania major Phyre2 PDB 1vlr chain A domain 1 Region: 59 - 143 Aligned: 79 Modelled: 85 Confidence: 93.8% Identity: 22% Fold: HIT-like Superfamily: HIT-like Family: mRNA decapping enzyme DcpS C-terminal domain Phyre2 PDB 2eo4 chain A Region: 42 - 143 Aligned: 95 Modelled: 102 Confidence: 93.7% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:150aa long hypothetical histidine triad nucleotide-binding PDBTitle: crystal structure of hypothetical histidine triad nucleotide-binding2 protein st2152 from sulfolobus tokodaii strain7 Phyre2 PDB 3l7x chain A Region: 43 - 143 Aligned: 95 Modelled: 101 Confidence: 93.7% Identity: 16% PDB header:cell cycle Chain: A: PDB Molecule:putative hit-like protein involved in cell-cycle PDBTitle: the crystal structure of smu.412c from streptococcus mutans ua159 Phyre2 PDB 3r6f chain A Region: 54 - 143 Aligned: 80 Modelled: 90 Confidence: 93.5% Identity: 13% PDB header:hydrolase Chain: A: PDB Molecule:hit family protein; PDBTitle: crystal structure of a zinc-containing hit family protein from2 encephalitozoon cuniculi Phyre2 PDB 1z84 chain A domain 2 Region: 39 - 143 Aligned: 95 Modelled: 105 Confidence: 93.5% Identity: 11% Fold: HIT-like Superfamily: HIT-like Family: Hexose-1-phosphate uridylyltransferase Phyre2 PDB 3bl9 chain A domain 1 Region: 59 - 143 Aligned: 79 Modelled: 85 Confidence: 93.1% Identity: 19% Fold: HIT-like Superfamily: HIT-like Family: mRNA decapping enzyme DcpS C-terminal domain Phyre2 PDB 3bl9 chain B Region: 59 - 143 Aligned: 79 Modelled: 85 Confidence: 92.7% Identity: 22% PDB header:hydrolase Chain: B: PDB Molecule:scavenger mrna-decapping enzyme dcps; PDBTitle: synthetic gene encoded dcps bound to inhibitor dg157493 Phyre2 1 d2pofa1 2 c3n1tE_ 3 c1xquA_ 4 d1xqua_ 5 c1emsB_ 6 d1emsa1 7 c3anoA_ 8 d1rzya_ 9 c3lb5B_ 10 d1kpfa_ 11 c3oj7A_ 12 d1fita_ 13 c3ksvA_ 14 d1vlra1 15 c2eo4A_ 16 c3l7xA_ 17 c3r6fA_ 18 d1z84a2 19 d3bl9a1 20 c3bl9B_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2pofa1 100.0 96 Fold:HIT-like Superfamily:HIT-like Family:CDH-like 2 c3n1tE_ 96.2 12 PDB header:hydrolase Chain: E: PDB Molecule:hit-like protein hint; PDBTitle: crystal structure of the h101a mutant echint gmp complex 3 c1xquA_ 95.9 16 PDB header:hydrolase Chain: A: PDB Molecule:hit family hydrolase; PDBTitle: hit family hydrolase from clostridium thermocellum cth-393 4 d1xqua_ 95.9 16 Fold:HIT-like Superfamily:HIT-like Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins 5 c1emsB_ 95.9 17 PDB header:antitumor protein Chain: B: PDB Molecule:nit-fragile histidine triad fusion protein; PDBTitle: crystal structure of the c. elegans nitfhit protein 6 d1emsa1 95.8 15 Fold:HIT-like Superfamily:HIT-like Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins 7 c3anoA_ 95.7 14 PDB header:transferase Chain: A: PDB Molecule:ap-4-a phosphorylase; PDBTitle: crystal structure of a novel diadenosine 5',5'''-p1,p4-tetraphosphate2 phosphorylase from mycobacterium tuberculosis h37rv 8 d1rzya_ 95.5 12 Fold:HIT-like Superfamily:HIT-like Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins 9 c3lb5B_ 95.4 13 PDB header:cell cycle Chain: B: PDB Molecule:hit-like protein involved in cell-cycle regulation; PDBTitle: crystal structure of hit-like protein involved in cell-cycle2 regulation from bartonella henselae with unknown ligand 10 d1kpfa_ 95.4 14 Fold:HIT-like Superfamily:HIT-like Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins 11 c3oj7A_ 95.1 24 PDB header:metal binding protein Chain: A: PDB Molecule:putative histidine triad family protein; PDBTitle: crystal structure of a histidine triad family protein from entamoeba2 histolytica, bound to sulfate 12 d1fita_ 94.9 15 Fold:HIT-like Superfamily:HIT-like Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins 13 c3ksvA_ 94.3 17 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: hypothetical protein from leishmania major 14 d1vlra1 93.8 22 Fold:HIT-like Superfamily:HIT-like Family:mRNA decapping enzyme DcpS C-terminal domain 15 c2eo4A_ 93.7 17 PDB header:hydrolase Chain: A: PDB Molecule:150aa long hypothetical histidine triad nucleotide-binding PDBTitle: crystal structure of hypothetical histidine triad nucleotide-binding2 protein st2152 from sulfolobus tokodaii strain7 16 c3l7xA_ 93.7 16 PDB header:cell cycle Chain: A: PDB Molecule:putative hit-like protein involved in cell-cycle PDBTitle: the crystal structure of smu.412c from streptococcus mutans ua159 17 c3r6fA_ 93.5 13 PDB header:hydrolase Chain: A: PDB Molecule:hit family protein; PDBTitle: crystal structure of a zinc-containing hit family protein from2 encephalitozoon cuniculi 18 d1z84a2 93.5 11 Fold:HIT-like Superfamily:HIT-like Family:Hexose-1-phosphate uridylyltransferase 19 d3bl9a1 93.1 19 Fold:HIT-like Superfamily:HIT-like Family:mRNA decapping enzyme DcpS C-terminal domain 20 c3bl9B_ 92.7 22 PDB header:hydrolase Chain: B: PDB Molecule:scavenger mrna-decapping enzyme dcps; PDBTitle: synthetic gene encoded dcps bound to inhibitor dg157493 21 c3o0mB_ not modelled 92.2 14 PDB header:hydrolase Chain: B: PDB Molecule:hit family protein; PDBTitle: crystal structure of a zn-bound histidine triad family protein from2 mycobacterium smegmatis 22 c1xmlA_ not modelled 91.5 20 PDB header:chaperone Chain: A: PDB Molecule:heat shock-like protein 1; PDBTitle: structure of human dcps 23 c3imiB_ not modelled 90.4 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hit family protein; PDBTitle: 2.01 angstrom resolution crystal structure of a hit family protein2 from bacillus anthracis str. 'ames ancestor' 24 d1y23a_ not modelled 89.0 17 Fold:HIT-like Superfamily:HIT-like Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins 25 d1guqa2 not modelled 88.4 15 Fold:HIT-like Superfamily:HIT-like Family:Hexose-1-phosphate uridylyltransferase 26 c3p0tB_ not modelled 88.1 17 PDB header:unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an hit-like protein from mycobacterium2 paratuberculosis 27 c3i24B_ not modelled 85.1 11 PDB header:hydrolase Chain: B: PDB Molecule:hit family hydrolase; PDBTitle: crystal structure of a hit family hydrolase protein from2 vibrio fischeri. northeast structural genomics consortium3 target id vfr176 28 d2oika1 not modelled 84.6 17 Fold:HIT-like Superfamily:HIT-like Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins 29 c1zwjA_ not modelled 80.5 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative galactose-1-phosphate uridyl transferase; PDBTitle: x-ray structure of galt-like protein from arabidopsis thaliana2 at5g18200 30 c3nrdB_ not modelled 74.4 13 PDB header:nucleotide binding protein Chain: B: PDB Molecule:histidine triad (hit) protein; PDBTitle: crystal structure of a histidine triad (hit) protein (smc02904) from2 sinorhizobium meliloti 1021 at 2.06 a resolution 31 c3i4sB_ not modelled 71.9 19 PDB header:hydrolase Chain: B: PDB Molecule:histidine triad protein; PDBTitle: crystal structure of histidine triad protein blr8122 from2 bradyrhizobium japonicum 32 c3oheA_ not modelled 68.4 13 PDB header:hydrolase Chain: A: PDB Molecule:histidine triad (hit) protein; PDBTitle: crystal structure of a histidine triad protein (maqu_1709) from2 marinobacter aquaeolei vt8 at 1.20 a resolution 33 c1gupC_ not modelled 61.7 15 PDB header:nucleotidyltransferase Chain: C: PDB Molecule:galactose-1-phosphate uridylyltransferase; PDBTitle: structure of nucleotidyltransferase complexed with udp-2 galactose 34 d1z84a1 not modelled 43.8 11 Fold:HIT-like Superfamily:HIT-like Family:Hexose-1-phosphate uridylyltransferase 35 d2soba_ not modelled 36.0 19 Fold:OB-fold Superfamily:Staphylococcal nuclease Family:Staphylococcal nuclease 36 c3bdlA_ not modelled 35.7 26 PDB header:hydrolase Chain: A: PDB Molecule:staphylococcal nuclease domain-containing PDBTitle: crystal structure of a truncated human tudor-sn 37 d1rkna_ not modelled 30.0 22 Fold:OB-fold Superfamily:Staphylococcal nuclease Family:Staphylococcal nuclease 38 c2jvaA_ not modelled 22.5 9 PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase domain protein; PDBTitle: nmr solution structure of peptidyl-trna hydrolase domain protein from2 pseudomonas syringae pv. tomato. northeast structural genomics3 consortium target psr211 39 c3ngbI_ not modelled 21.8 44 PDB header:viral protein/immune system Chain: I: PDB Molecule:envelope glycoprotein gp160; PDBTitle: crystal structure of broadly and potently neutralizing antibody vrc012 in complex with hiv-1 gp120 40 d1vdla_ not modelled 20.6 18 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 41 d1qpma_ not modelled 19.2 13 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:Excisionase-like 42 d1tnsa_ not modelled 19.0 9 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:Excisionase-like 43 d2amxa1 not modelled 17.8 10 Fold:TIM beta/alpha-barrel Superfamily:Metallo-dependent hydrolases Family:Adenosine/AMP deaminase 44 c3gwhB_ not modelled 15.1 18 PDB header:transcription Chain: B: PDB Molecule:transcriptional antiterminator (bglg family); PDBTitle: crystallographic ab initio protein solution far below atomic2 resolution 45 c3dnlB_ not modelled 14.8 29 PDB header:viral protein Chain: B: PDB Molecule:hiv-1 envelope glycoprotein gp120; PDBTitle: molecular structure for the hiv-1 gp120 trimer in the b12-2 bound state 46 c1ql1A_ not modelled 12.9 32 PDB header:virus Chain: A: PDB Molecule:pf1 bacteriophage coat protein b; PDBTitle: inovirus (filamentous bacteriophage) strain pf1 major coat2 protein assembly 47 d1tafa_ not modelled 12.8 15 Fold:Histone-fold Superfamily:Histone-fold Family:TBP-associated factors, TAFs 48 c3jwdA_ not modelled 12.3 40 PDB header:viral protein Chain: A: PDB Molecule:hiv-1 gp120 envelope glycoprotein; PDBTitle: structure of hiv-1 gp120 with gp41-interactive region: layered2 architecture and basis of conformational mobility 49 d1jz8a1 not modelled 12.0 38 Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain 50 d1snoa_ not modelled 11.7 22 Fold:OB-fold Superfamily:Staphylococcal nuclease Family:Staphylococcal nuclease 51 c2i45C_ not modelled 11.5 22 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of protein nmb1881 from neisseria meningitidis 52 d1yq2a2 not modelled 11.1 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain 53 d1mr0a_ not modelled 11.1 21 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Agouti-related protein Family:Agouti-related protein 54 d1k8kd2 not modelled 10.2 18 Fold:Secretion chaperone-like Superfamily:Arp2/3 complex subunits Family:Arp2/3 complex subunits 55 c2i34B_ not modelled 9.7 14 PDB header:hydrolase Chain: B: PDB Molecule:acid phosphatase; PDBTitle: the crystal structure of class c acid phosphatase from bacillus2 anthracis with tungstate bound 56 c3dwlI_ not modelled 9.6 18 PDB header:structural protein Chain: I: PDB Molecule:actin-related protein 2/3 complex subunit 2; PDBTitle: crystal structure of fission yeast arp2/3 complex lacking the arp22 subunit 57 d2fnaa1 not modelled 9.5 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Helicase DNA-binding domain 58 c2k21A_ not modelled 9.3 20 PDB header:membrane protein Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e PDBTitle: nmr structure of human kcne1 in lmpg micelles at ph 6.0 and2 40 degree c 59 d1es6a2 not modelled 9.0 43 Fold:EV matrix protein Superfamily:EV matrix protein Family:EV matrix protein 60 c2rrlA_ not modelled 8.8 20 PDB header:protein transport Chain: A: PDB Molecule:flagellar hook-length control protein; PDBTitle: solution structure of the c-terminal domain of the flik 61 c3u1dA_ not modelled 8.3 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the structure of a protein with a gntr superfamily winged-helix-turn-2 helix domain from halomicrobium mukohataei. 62 c2k2wA_ not modelled 8.2 25 PDB header:cell cycle Chain: A: PDB Molecule:recombination and dna repair protein; PDBTitle: second brct domain of nbs1 63 c3hx6A_ not modelled 7.4 28 PDB header:cell adhesion Chain: A: PDB Molecule:type 4 fimbrial biogenesis protein pily1; PDBTitle: crystal structure of pseudomonas aeruginosa pily1 c-terminal2 domain 64 d2glia1 not modelled 7.2 30 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 65 d2b1xa1 not modelled 7.0 15 Fold:ISP domain Superfamily:ISP domain Family:Ring hydroxylating alpha subunit ISP domain 66 d1a4ma_ not modelled 6.9 19 Fold:TIM beta/alpha-barrel Superfamily:Metallo-dependent hydrolases Family:Adenosine/AMP deaminase 67 d1j26a_ not modelled 6.6 16 Fold:dsRBD-like Superfamily:Peptidyl-tRNA hydrolase domain-like Family:Peptidyl-tRNA hydrolase domain 68 d2nxya1 not modelled 6.3 29 Fold:gp120 core Superfamily:gp120 core Family:gp120 core 69 c2p9lD_ not modelled 6.3 18 PDB header:structural protein Chain: D: PDB Molecule:actin-related protein 2/3 complex subunit 2; PDBTitle: crystal structure of bovine arp2/3 complex 70 c2iirJ_ not modelled 6.2 26 PDB header:transferase Chain: J: PDB Molecule:acetate kinase; PDBTitle: acetate kinase from a hypothermophile thermotoga maritima 71 c3rysA_ not modelled 6.2 24 PDB header:hydrolase Chain: A: PDB Molecule:adenosine deaminase 1; PDBTitle: the crystal structure of adenine deaminase (aaur1117) from2 arthrobacter aurescens 72 d1hqia_ not modelled 6.2 11 Fold:Monooxygenase (hydroxylase) regulatory protein Superfamily:Monooxygenase (hydroxylase) regulatory protein Family:Monooxygenase (hydroxylase) regulatory protein 73 d2b7ea1 not modelled 6.1 45 Fold:Another 3-helical bundle Superfamily:FF domain Family:FF domain 74 d2ihoa2 not modelled 6.1 14 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:MOA C-terminal domain-like 75 d1t0ga_ not modelled 6.0 19 Fold:Cytochrome b5-like heme/steroid binding domain Superfamily:Cytochrome b5-like heme/steroid binding domain Family:Steroid-binding domain 76 d1vfla1 not modelled 6.0 19 Fold:TIM beta/alpha-barrel Superfamily:Metallo-dependent hydrolases Family:Adenosine/AMP deaminase 77 d1iufa1 not modelled 6.0 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Centromere-binding 78 d1d2za_ not modelled 5.9 30 Fold:DEATH domain Superfamily:DEATH domain Family:DEATH domain, DD 79 c2l1nA_ not modelled 5.9 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of the protein yp_399305.1 80 d2bf2a1 not modelled 5.6 19 Fold:Monooxygenase (hydroxylase) regulatory protein Superfamily:Monooxygenase (hydroxylase) regulatory protein Family:Monooxygenase (hydroxylase) regulatory protein 81 d1k8ke_ not modelled 5.6 27 Fold:Arp2/3 complex 21 kDa subunit ARPC3 Superfamily:Arp2/3 complex 21 kDa subunit ARPC3 Family:Arp2/3 complex 21 kDa subunit ARPC3 82 d2bf5a1 not modelled 5.5 19 Fold:Monooxygenase (hydroxylase) regulatory protein Superfamily:Monooxygenase (hydroxylase) regulatory protein Family:Monooxygenase (hydroxylase) regulatory protein 83 c2e5nA_ not modelled 5.5 18 PDB header:transcription Chain: A: PDB Molecule:rna polymerase ii elongation factor ell2; PDBTitle: solution structure of the ell_n2 domain of target of rna2 polymerase ii elongation factor ell2 84 c1bmv2_ not modelled 5.4 21 PDB header:virus/rna Chain: 2: PDB Molecule:protein (icosahedral virus - b and c domain); PDBTitle: protein-rna interactions in an icosahedral virus at 3.02 angstroms resolution 85 c1es6A_ not modelled 5.4 43 PDB header:viral protein Chain: A: PDB Molecule:matrix protein vp40; PDBTitle: crystal structure of the matrix protein of ebola virus 86 d1nexa2 not modelled 5.3 20 Fold:POZ domain Superfamily:POZ domain Family:BTB/POZ domain 87 c2bfuL_ not modelled 5.3 18 PDB header:virus Chain: L: PDB Molecule:cowpea mosaic virus, large (l) subunit; PDBTitle: x-ray structure of cpmv top component

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0