Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP54745
DateThu Jan 5 12:06:03 GMT 2012
Unique Job IDfcdb342c9470a1b6

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d2r48a1
Top template information
Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:PTS system IIB component-like
Family:PTS system, Fructose specific IIB subunit-like
Confidence and coverage
Confidence:100.0% Coverage: 15%
101 residues ( 15% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
608 residues ( 92%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MVLFYRAHWRDYKNDQVRIMMNLTTLTHRDALCLNARFTSREEAIHALTQRLAALGKISS
Secondary structure 




















SS confidence 



























































Disorder  ???







???













































Disorder confidence 



























































 
   .........70.........80.........90.........100.........110.........120
Sequence  TEQFLEEVYRRESLGPTALGEGLAVPHGKTAAVKEAAFAVATLSEPLQWEGVDGPEAVDL
Secondary structure 



































SS confidence 



























































Disorder 















?






























????







Disorder confidence 



























































 
   .........130.........140.........150.........160.........170.........180
Sequence  VVLLAIPPNEAGTTHMQLLTALTTRLADDEIRARIQSATTPDELLSALDDKGGTQPSASF
Secondary structure 



















SS confidence 



























































Disorder 









???





































?????????
Disorder confidence 



























































 
   .........190.........200.........210.........220.........230.........240
Sequence  SNAPTIVCVTACPAGIAHTYMAAEYLEKAGRKLGVNVYVEKQGANGIEGRLTADQLNSAT
Secondary structure 


















SS confidence 



























































Disorder  ??















?
























?
?????








Disorder confidence 



























































 
   .........250.........260.........270.........280.........290.........300
Sequence  ACIFAAEVAIKESERFNGIPALSVPVAEPIRHAEALIQQALTLKRSDETRTVQQDTQPVK
Secondary structure 



























SS confidence 



























































Disorder 











????

























??????????????????
Disorder confidence 



























































 
   .........310.........320.........330.........340.........350.........360
Sequence  SVKTELKQALLSGISFAVPLIVAGGTVLAVAVLLSQIFGLQDLFNEENSWLWMYRKLGGG
Secondary structure 













SS confidence 



























































Disorder  ?































???























Disorder confidence 



























































 
   .........370.........380.........390.........400.........410.........420
Sequence  LLGILMVPVLAAYTAYSLADKPALAPGFAAGLAANMIGSGFLGAVVGGLIAGYLMRWVKN
Secondary structure 






SS confidence 



























































Disorder 



























































Disorder confidence 



























































 
   .........430.........440.........450.........460.........470.........480
Sequence  HLRLSSKFNGFLTFYLYPVLGTLGAGSLMLFVVGEPVAWINNSLTAWLNGLSGSNALLLG
Secondary structure 









SS confidence 



























































Disorder 




??










































?








Disorder confidence 



























































 
   .........490.........500.........510.........520.........530.........540
Sequence  AILGFMCSFDLGGPVNKAAYAFCLGAMANGVYGPYAIFASVKMVSAFTVTASTMLAPRLF
Secondary structure 


















SS confidence 



























































Disorder 




























?





























Disorder confidence 



























































 
   .........550.........560.........570.........580.........590.........600
Sequence  KEFEIETGKSTWLLGLAGITEGAIPMAIEDPLRVIGSFVLGSMVTGAIVGAMNIGLSTPG
Secondary structure 














SS confidence 



























































Disorder 




















































?





Disorder confidence 



























































 
   .........610.........620.........630.........640.........650........
Sequence  AGIFSLFLLHDNGAGGVMAAIGWFGAALVGAAISTAILLMWRRHAVKHGNYLTDGVMP
Secondary structure 























SS confidence 

























































Disorder 










???



























?????????
??????
Disorder confidence 

























































 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2r48 chain A domain 1

3D model

Region: 185 - 286
Aligned: 101
Modelled: 102
Confidence: 100.0%
Identity: 46%
Fold: Phosphotyrosine protein phosphatases I-like
Superfamily: PTS system IIB component-like
Family: PTS system, Fructose specific IIB subunit-like

Phyre2

PDB 2kyr chain A

3D model

Region: 183 - 282
Aligned: 100
Modelled: 100
Confidence: 100.0%
Identity: 35%
PDB header:transferase
Chain: A: PDB Molecule:fructose-like phosphotransferase enzyme iib component 1;
PDBTitle: solution structure of enzyme iib subunit of pts system from2 escherichia coli k12. northeast structural genomics consortium target3 er315/ontario center for structural proteomics target ec0544

Phyre2

PDB 2r4q chain A domain 1

3D model

Region: 185 - 288
Aligned: 101
Modelled: 104
Confidence: 100.0%
Identity: 42%
Fold: Phosphotyrosine protein phosphatases I-like
Superfamily: PTS system IIB component-like
Family: PTS system, Fructose specific IIB subunit-like

Phyre2

PDB 3qnq chain D

3D model

Region: 303 - 656
Aligned: 353
Modelled: 354
Confidence: 100.0%
Identity: 13%
PDB header:membrane protein, transport protein
Chain: D: PDB Molecule:pts system, cellobiose-specific iic component;
PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system

Phyre2

PDB 3urr chain B

3D model

Region: 19 - 172
Aligned: 149
Modelled: 154
Confidence: 100.0%
Identity: 27%
PDB header:transferase
Chain: B: PDB Molecule:pts iia-like nitrogen-regulatory protein ptsn;
PDBTitle: structure of pts iia-like nitrogen-regulatory protein ptsn (bth_i0484)2 (ptsn)

Phyre2

PDB 2a0j chain A

3D model

Region: 23 - 168
Aligned: 143
Modelled: 146
Confidence: 100.0%
Identity: 28%
PDB header:transferase
Chain: A: PDB Molecule:pts system, nitrogen regulatory iia protein;
PDBTitle: crystal structure of nitrogen regulatory protein iia-ntr from2 neisseria meningitidis

Phyre2

PDB 1a6j chain A

3D model

Region: 21 - 172
Aligned: 149
Modelled: 152
Confidence: 100.0%
Identity: 26%
Fold: Phoshotransferase/anion transport protein
Superfamily: Phoshotransferase/anion transport protein
Family: IIA domain of mannitol-specific and ntr phosphotransferase EII

Phyre2

PDB 3oxp chain B

3D model

Region: 22 - 171
Aligned: 144
Modelled: 149
Confidence: 100.0%
Identity: 22%
PDB header:transferase
Chain: B: PDB Molecule:phosphotransferase enzyme ii, a component;
PDBTitle: structure of phosphotransferase enzyme ii, a component from yersinia2 pestis co92 at 1.2 a resolution

Phyre2

PDB 3oxp chain A

3D model

Region: 22 - 171
Aligned: 144
Modelled: 149
Confidence: 100.0%
Identity: 22%
PDB header:transferase
Chain: A: PDB Molecule:phosphotransferase enzyme ii, a component;
PDBTitle: structure of phosphotransferase enzyme ii, a component from yersinia2 pestis co92 at 1.2 a resolution

Phyre2

PDB 2oq3 chain A

3D model

Region: 21 - 170
Aligned: 143
Modelled: 148
Confidence: 99.9%
Identity: 20%
PDB header:transferase
Chain: A: PDB Molecule:mannitol-specific cryptic phosphotransferase
PDBTitle: solution structure of the mannitol- specific cryptic2 phosphotransferase enzyme iia cmtb from escherichia coli

Phyre2

PDB 3bjv chain A

3D model

Region: 21 - 178
Aligned: 150
Modelled: 158
Confidence: 99.9%
Identity: 21%
PDB header:transferase
Chain: A: PDB Molecule:rmpa;
PDBTitle: the crystal structure of a putative pts iia(ptxa) from streptococcus2 mutans

Phyre2

PDB 2oqt chain D

3D model

Region: 23 - 175
Aligned: 145
Modelled: 153
Confidence: 99.9%
Identity: 19%
PDB header:transferase
Chain: D: PDB Molecule:hypothetical protein spy0176;
PDBTitle: structural genomics, the crystal structure of a putative2 pts iia domain from streptococcus pyogenes m1 gas

Phyre2

PDB 1a3a chain A

3D model

Region: 27 - 172
Aligned: 139
Modelled: 146
Confidence: 99.9%
Identity: 29%
Fold: Phoshotransferase/anion transport protein
Superfamily: Phoshotransferase/anion transport protein
Family: IIA domain of mannitol-specific and ntr phosphotransferase EII

Phyre2

PDB 1xiz chain A

3D model

Region: 23 - 173
Aligned: 148
Modelled: 151
Confidence: 99.9%
Identity: 22%
Fold: Phoshotransferase/anion transport protein
Superfamily: Phoshotransferase/anion transport protein
Family: IIA domain of mannitol-specific and ntr phosphotransferase EII

Phyre2

PDB 1hyn chain Q

3D model

Region: 17 - 171
Aligned: 154
Modelled: 155
Confidence: 98.3%
Identity: 18%
PDB header:membrane protein
Chain: Q: PDB Molecule:band 3 anion transport protein;
PDBTitle: crystal structure of the cytoplasmic domain of human2 erythrocyte band-3 protein

Phyre2

PDB 1hyn chain P

3D model

Region: 17 - 171
Aligned: 154
Modelled: 155
Confidence: 98.3%
Identity: 21%
Fold: Phoshotransferase/anion transport protein
Superfamily: Phoshotransferase/anion transport protein
Family: Anion transport protein, cytoplasmic domain

Phyre2

PDB 1tvm chain A

3D model

Region: 172 - 282
Aligned: 101
Modelled: 111
Confidence: 96.6%
Identity: 22%
PDB header:transferase
Chain: A: PDB Molecule:pts system, galactitol-specific iib component;
PDBTitle: nmr structure of enzyme gatb of the galactitol-specific2 phosphoenolpyruvate-dependent phosphotransferase system

Phyre2

PDB 2a5l chain A domain 1

3D model

Region: 184 - 246
Aligned: 61
Modelled: 63
Confidence: 96.3%
Identity: 16%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: WrbA-like

Phyre2

PDB 1ycg chain A domain 1

3D model

Region: 182 - 310
Aligned: 125
Modelled: 129
Confidence: 95.2%
Identity: 12%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: Flavodoxin-related

Phyre2

PDB 1iib chain A

3D model

Region: 192 - 282
Aligned: 83
Modelled: 91
Confidence: 94.7%
Identity: 13%
Fold: Phosphotyrosine protein phosphatases I-like
Superfamily: PTS system IIB component-like
Family: PTS system, Lactose/Cellobiose specific IIB subunit

Phyre2

PDB 2ohi chain B

3D model

Region: 159 - 310
Aligned: 142
Modelled: 142
Confidence: 82.9%
Identity: 14%
PDB header:oxidoreductase
Chain: B: PDB Molecule:type a flavoprotein fpra;
PDBTitle: crystal structure of coenzyme f420h2 oxidase (fpra), a diiron2 flavoprotein, reduced state

Phyre2
1

d2r48a1
2

c2kyrA_
3

d2r4qa1
4

c3qnqD_
5

c3urrB_
6

c2a0jA_
7

d1a6ja_
8

c3oxpB_
9

c3oxpA_
10

c2oq3A_
11

c3bjvA_
12

c2oqtD_
13

d1a3aa_
14

d1xiza_
15

c1hynQ_
16

d1hynp_
17

c1tvmA_
18

d2a5la1
19

d1ycga1
20

d1iiba_
21



22



23



24



25



26



27



28



29



30



31



32



33



34



35

c2ohiB_
36



37



38



39



40



41



42



43



44



45



46



47



48



49



50



51



52



53



54



55



56



57



58



59



60



61



62



63



64



65



66



67



68



69



70



71



72



73



74



75



76



77



78



79



80



81



82



83



84



85



86



87



88



89



90



91



92



93



94



95



96



97



98



99



100



101



102



103



104



105



106



107



108



109



110



111



112



113



114



115



116



117



118



119



120



121



122



123



124



125



126



127



128



129



130



131



132



133



134



135



136



137



138



139



140



141



142



143



144



145



146



147



148



149



150



151



152



153



154



155



156






Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2r48a1



100.0 46 Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:PTS system IIB component-like
Family:PTS system, Fructose specific IIB subunit-like
2c2kyrA_



100.0 35 PDB header:transferase
Chain: A: PDB Molecule:fructose-like phosphotransferase enzyme iib component 1;
PDBTitle: solution structure of enzyme iib subunit of pts system from2 escherichia coli k12. northeast structural genomics consortium target3 er315/ontario center for structural proteomics target ec0544
3d2r4qa1



100.0 42 Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:PTS system IIB component-like
Family:PTS system, Fructose specific IIB subunit-like
4c3qnqD_



100.0 13 PDB header:membrane protein, transport protein
Chain: D: PDB Molecule:pts system, cellobiose-specific iic component;
PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system
5c3urrB_



100.0 27 PDB header:transferase
Chain: B: PDB Molecule:pts iia-like nitrogen-regulatory protein ptsn;
PDBTitle: structure of pts iia-like nitrogen-regulatory protein ptsn (bth_i0484)2 (ptsn)
6c2a0jA_



100.0 28 PDB header:transferase
Chain: A: PDB Molecule:pts system, nitrogen regulatory iia protein;
PDBTitle: crystal structure of nitrogen regulatory protein iia-ntr from2 neisseria meningitidis
7d1a6ja_



100.0 26 Fold:Phoshotransferase/anion transport protein
Superfamily:Phoshotransferase/anion transport protein
Family:IIA domain of mannitol-specific and ntr phosphotransferase EII
8c3oxpB_



100.0 22 PDB header:transferase
Chain: B: PDB Molecule:phosphotransferase enzyme ii, a component;
PDBTitle: structure of phosphotransferase enzyme ii, a component from yersinia2 pestis co92 at 1.2 a resolution
9c3oxpA_



100.0 22 PDB header:transferase
Chain: A: PDB Molecule:phosphotransferase enzyme ii, a component;
PDBTitle: structure of phosphotransferase enzyme ii, a component from yersinia2 pestis co92 at 1.2 a resolution
10c2oq3A_



99.9 20 PDB header:transferase
Chain: A: PDB Molecule:mannitol-specific cryptic phosphotransferase
PDBTitle: solution structure of the mannitol- specific cryptic2 phosphotransferase enzyme iia cmtb from escherichia coli
11c3bjvA_



99.9 21 PDB header:transferase
Chain: A: PDB Molecule:rmpa;
PDBTitle: the crystal structure of a putative pts iia(ptxa) from streptococcus2 mutans
12c2oqtD_



99.9 19 PDB header:transferase
Chain: D: PDB Molecule:hypothetical protein spy0176;
PDBTitle: structural genomics, the crystal structure of a putative2 pts iia domain from streptococcus pyogenes m1 gas
13d1a3aa_



99.9 29 Fold:Phoshotransferase/anion transport protein
Superfamily:Phoshotransferase/anion transport protein
Family:IIA domain of mannitol-specific and ntr phosphotransferase EII
14d1xiza_



99.9 22 Fold:Phoshotransferase/anion transport protein
Superfamily:Phoshotransferase/anion transport protein
Family:IIA domain of mannitol-specific and ntr phosphotransferase EII
15c1hynQ_



98.3 18 PDB header:membrane protein
Chain: Q: PDB Molecule:band 3 anion transport protein;
PDBTitle: crystal structure of the cytoplasmic domain of human2 erythrocyte band-3 protein
16d1hynp_



98.3 21 Fold:Phoshotransferase/anion transport protein
Superfamily:Phoshotransferase/anion transport protein
Family:Anion transport protein, cytoplasmic domain
17c1tvmA_



96.6 22 PDB header:transferase
Chain: A: PDB Molecule:pts system, galactitol-specific iib component;
PDBTitle: nmr structure of enzyme gatb of the galactitol-specific2 phosphoenolpyruvate-dependent phosphotransferase system
18d2a5la1



96.3 16 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:WrbA-like
19d1ycga1



95.2 12 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
20d1iiba_



94.7 13 Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:PTS system IIB component-like
Family:PTS system, Lactose/Cellobiose specific IIB subunit
21c3czcA_



not modelled 94.7 13 PDB header:transferase
Chain: A: PDB Molecule:rmpb;
PDBTitle: the crystal structure of a putative pts iib(ptxb) from2 streptococcus mutans
22c3nbmA_



not modelled 94.6 14 PDB header:transferase
Chain: A: PDB Molecule:pts system, lactose-specific iibc components;
PDBTitle: the lactose-specific iib component domain structure of the2 phosphoenolpyruvate:carbohydrate phosphotransferase system (pts) from3 streptococcus pneumoniae.
23c3fniA_



not modelled 94.4 11 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative diflavin flavoprotein a 3;
PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a
24d2arka1



not modelled 94.1 17 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:WrbA-like
25c2l2qA_



not modelled 93.9 18 PDB header:transferase
Chain: A: PDB Molecule:pts system, cellobiose-specific iib component (cela);
PDBTitle: solution structure of cellobiose-specific phosphotransferase iib2 component protein from borrelia burgdorferi
26d1ydga_



not modelled 93.5 28 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:WrbA-like
27d1vkra_



not modelled 93.4 15 Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:PTS system IIB component-like
Family:PTS system, Lactose/Cellobiose specific IIB subunit
28c1vkrA_



not modelled 93.4 15 PDB header:transferase
Chain: A: PDB Molecule:mannitol-specific pts system enzyme iiabc components;
PDBTitle: structure of iib domain of the mannitol-specific permease enzyme ii
29d1e5da1



not modelled 90.6 18 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
30c3p0rA_



not modelled 88.2 26 PDB header:oxidoreductase
Chain: A: PDB Molecule:azoreductase;
PDBTitle: crystal structure of azoreductase from bacillus anthracis str. sterne
31d1vmea1



not modelled 85.9 8 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
32c2zkiH_



not modelled 83.4 16 PDB header:transcription
Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding
PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872)
33c3snoA_



not modelled 83.4 24 PDB header:transferase
Chain: A: PDB Molecule:hypothetical aminotransferase;
PDBTitle: crystal structure of a hypothetical aminotransferase (ncgl2491) from2 corynebacterium glutamicum atcc 13032 kitasato at 1.60 a resolution
34c3d7nA_



not modelled 83.3 27 PDB header:electron transport
Chain: A: PDB Molecule:flavodoxin, wrba-like protein;
PDBTitle: the crystal structure of the flavodoxin, wrba-like protein from2 agrobacterium tumefaciens
35c2ohiB_



82.9 14 PDB header:oxidoreductase
Chain: B: PDB Molecule:type a flavoprotein fpra;
PDBTitle: crystal structure of coenzyme f420h2 oxidase (fpra), a diiron2 flavoprotein, reduced state
36d1u7ga_



not modelled 82.8 20 Fold:Ammonium transporter
Superfamily:Ammonium transporter
Family:Ammonium transporter
37c3klbA_



not modelled 80.8 16 PDB header:flavoprotein
Chain: A: PDB Molecule:putative flavoprotein;
PDBTitle: crystal structure of putative flavoprotein in complex with fmn2 (yp_213683.1) from bacteroides fragilis nctc 9343 at 1.75 a3 resolution
38c3rh0A_



not modelled 80.0 10 PDB header:oxidoreductase
Chain: A: PDB Molecule:arsenate reductase;
PDBTitle: corynebacterium glutamicum mycothiol/mycoredoxin1-dependent arsenate2 reductase cg_arsc2
39d1sqsa_



not modelled 80.0 12 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Hypothetical protein SP1951
40c3b6iB_



not modelled 77.8 23 PDB header:flavoprotein
Chain: B: PDB Molecule:flavoprotein wrba;
PDBTitle: wrba from escherichia coli, native structure
41c1zggA_



not modelled 77.4 15 PDB header:hydrolase
Chain: A: PDB Molecule:putative low molecular weight protein-tyrosine-
PDBTitle: solution structure of a low molecular weight protein2 tyrosine phosphatase from bacillus subtilis
42c3f2vA_



not modelled 77.2 18 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:general stress protein 14;
PDBTitle: crystal structure of the general stress protein 142 (tde0354) in complex with fmn from treponema denticola,3 northeast structural genomics consortium target tdr58.
43c1ychD_



not modelled 77.0 13 PDB header:oxidoreductase
Chain: D: PDB Molecule:nitric oxide reductase;
PDBTitle: x-ray crystal structures of moorella thermoacetica fpra.2 novel diiron site structure and mechanistic insights into3 a scavenging nitric oxide reductase
44c2q9uB_



not modelled 77.0 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:a-type flavoprotein;
PDBTitle: crystal structure of the flavodiiron protein from giardia2 intestinalis
45d1t0ba_



not modelled 70.3 26 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:ThuA-like
46c2q62A_



not modelled 70.0 12 PDB header:flavoprotein
Chain: A: PDB Molecule:arsh;
PDBTitle: crystal structure of arsh from sinorhizobium meliloti
47c1e5dA_



not modelled 68.8 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:rubredoxin\:oxygen oxidoreductase;
PDBTitle: rubredoxin oxygen:oxidoreductase (roo) from anaerobe2 desulfovibrio gigas
48c1vmeB_



not modelled 64.4 11 PDB header:electron transport
Chain: B: PDB Molecule:flavoprotein;
PDBTitle: crystal structure of flavoprotein (tm0755) from thermotoga maritima at2 1.80 a resolution
49c1y8qD_



not modelled 61.3 8 PDB header:ligase
Chain: D: PDB Molecule:ubiquitin-like 2 activating enzyme e1b;
PDBTitle: sumo e1 activating enzyme sae1-sae2-mg-atp complex
50c3kydB_



not modelled 61.3 5 PDB header:ligase
Chain: B: PDB Molecule:sumo-activating enzyme subunit 2;
PDBTitle: human sumo e1~sumo1-amp tetrahedral intermediate mimic
51d5nula_



not modelled 57.6 23 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
52c3h9gA_



not modelled 56.7 13 PDB header:transferase/antibiotic
Chain: A: PDB Molecule:mccb protein;
PDBTitle: crystal structure of e. coli mccb + mcca-n7isoasn
53d1acoa2



not modelled 55.1 8 Fold:Aconitase iron-sulfur domain
Superfamily:Aconitase iron-sulfur domain
Family:Aconitase iron-sulfur domain
54d2qwxa1



not modelled 53.2 22 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Quinone reductase
55c2v9cA_



not modelled 53.0 31 PDB header:oxidoreductase
Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase 1;
PDBTitle: x-ray crystallographic structure of a pseudomonas2 aeruginosa azoreductase in complex with methyl red.
56c3izcs_



not modelled 52.5 18 PDB header:ribosome
Chain: S: PDB Molecule:60s ribosomal protein rpl20 (l18ae);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
57d2b3ya2



not modelled 51.5 26 Fold:Aconitase iron-sulfur domain
Superfamily:Aconitase iron-sulfur domain
Family:Aconitase iron-sulfur domain
58c3k9cA_



not modelled 51.2 15 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, laci family protein;
PDBTitle: crystal structure of laci transcriptional regulator from rhodococcus2 species.
59c3hlyA_



not modelled 50.1 12 PDB header:flavoprotein
Chain: A: PDB Molecule:flavodoxin-like domain;
PDBTitle: crystal structure of the flavodoxin-like domain from2 synechococcus sp q5mzp6_synp6 protein. northeast structural3 genomics consortium target snr135d.
60d1qrda_



not modelled 50.0 24 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Quinone reductase
61c3cswB_



not modelled 49.0 13 PDB header:transferase
Chain: B: PDB Molecule:putative branched-chain-amino-acid aminotransferase;
PDBTitle: crystal structure of a putative branched-chain amino acid2 aminotransferase (tm0831) from thermotoga maritima at 2.15 a3 resolution
62c2ad5B_



not modelled 49.0 27 PDB header:ligase
Chain: B: PDB Molecule:ctp synthase;
PDBTitle: mechanisms of feedback regulation and drug resistance of ctp2 synthetases: structure of the e. coli ctps/ctp complex at 2.8-3 angstrom resolution.
63d1jw9b_



not modelled 48.1 13 Fold:Activating enzymes of the ubiquitin-like proteins
Superfamily:Activating enzymes of the ubiquitin-like proteins
Family:Molybdenum cofactor biosynthesis protein MoeB
64c1zj8B_



not modelled 47.2 18 PDB header:oxidoreductase
Chain: B: PDB Molecule:probable ferredoxin-dependent nitrite reductase nira;
PDBTitle: structure of mycobacterium tuberculosis nira protein
65c3iz5s_



not modelled 47.2 14 PDB header:ribosome
Chain: S: PDB Molecule:60s ribosomal protein l18a (l18ae);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
66c5acnA_



not modelled 47.0 8 PDB header:lyase(carbon-oxygen)
Chain: A: PDB Molecule:aconitase;
PDBTitle: structure of activated aconitase. formation of the (4fe-4s)2 cluster in the crystal
67c3c1iA_



not modelled 46.8 17 PDB header:transport protein
Chain: A: PDB Molecule:ammonia channel;
PDBTitle: substrate binding, deprotonation and selectivity at the2 periplasmic entrance of the e. coli ammonia channel amtb
68c3djeA_



not modelled 44.5 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:fructosyl amine: oxygen oxidoreductase;
PDBTitle: crystal structure of the deglycating enzyme fructosamine2 oxidase from aspergillus fumigatus (amadoriase ii) in3 complex with fsa
69c1wrvB_



not modelled 44.5 18 PDB header:transferase
Chain: B: PDB Molecule:branched-chain amino acid aminotransferase;
PDBTitle: crystal structure of t.th.hb8 branched-chain amino acid2 aminotransferase
70c1jrxA_



not modelled 42.9 10 PDB header:oxidoreductase
Chain: A: PDB Molecule:flavocytochrome c;
PDBTitle: crystal structure of arg402ala mutant flavocytochrome c32 from shewanella frigidimarina
71c2b2hA_



not modelled 42.2 20 PDB header:transport protein
Chain: A: PDB Molecule:ammonium transporter;
PDBTitle: ammonium transporter amt-1 from a. fulgidus (as)
72c3fvwA_



not modelled 40.9 13 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative nad(p)h-dependent fmn reductase;
PDBTitle: crystal structure of the q8dwd8_strmu protein from2 streptococcus mutans. northeast structural genomics3 consortium target smr99.
73c3o1hB_



not modelled 40.0 25 PDB header:signaling protein
Chain: B: PDB Molecule:periplasmic protein tort;
PDBTitle: crystal structure of the tors sensor domain - tort complex in the2 presence of tmao
74c2gi4A_



not modelled 39.9 25 PDB header:hydrolase
Chain: A: PDB Molecule:possible phosphotyrosine protein phosphatase;
PDBTitle: solution structure of the low molecular weight protein2 tyrosine phosphatase from campylobacter jejuni.
75d1rtta_



not modelled 39.8 16 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:NADPH-dependent FMN reductase
76d1t5ba_



not modelled 39.8 21 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Quinone reductase
77c3ry3B_



not modelled 39.7 22 PDB header:transport protein
Chain: B: PDB Molecule:putative solute-binding protein;
PDBTitle: putative solute-binding protein from yersinia pestis.
78c1qo8A_



not modelled 39.3 11 PDB header:oxidoreductase
Chain: A: PDB Molecule:flavocytochrome c3 fumarate reductase;
PDBTitle: the structure of the open conformation of a flavocytochrome2 c3 fumarate reductase
79c3edoA_



not modelled 39.0 11 PDB header:flavoprotein
Chain: A: PDB Molecule:putative trp repressor binding protein;
PDBTitle: crystal structure of flavoprotein in complex with fmn2 (yp_193882.1) from lactobacillus acidophilus ncfm at 1.203 a resolution
80d1h05a_



not modelled 38.8 16 Fold:Flavodoxin-like
Superfamily:Type II 3-dehydroquinate dehydratase
Family:Type II 3-dehydroquinate dehydratase
81c1zfnA_



not modelled 38.4 10 PDB header:transferase
Chain: A: PDB Molecule:adenylyltransferase thif;
PDBTitle: structural analysis of escherichia coli thif
82c2b76N_



not modelled 38.3 7 PDB header:oxidoreductase
Chain: N: PDB Molecule:fumarate reductase iron-sulfur protein;
PDBTitle: e. coli quinol fumarate reductase frda e49q mutation
83c2hpvA_



not modelled 37.5 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase;
PDBTitle: crystal structure of fmn-dependent azoreductase from enterococcus2 faecalis
84c2b3yB_



not modelled 37.2 24 PDB header:lyase
Chain: B: PDB Molecule:iron-responsive element binding protein 1;
PDBTitle: structure of a monoclinic crystal form of human cytosolic aconitase2 (irp1)
85d2gk3a1



not modelled 36.9 23 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:STM3548-like
86d1gtza_



not modelled 35.8 18 Fold:Flavodoxin-like
Superfamily:Type II 3-dehydroquinate dehydratase
Family:Type II 3-dehydroquinate dehydratase
87d1gqoa_



not modelled 35.3 11 Fold:Flavodoxin-like
Superfamily:Type II 3-dehydroquinate dehydratase
Family:Type II 3-dehydroquinate dehydratase
88c3lcmB_



not modelled 35.3 20 PDB header:oxidoreductase
Chain: B: PDB Molecule:putative oxidoreductase;
PDBTitle: crystal structure of smu.1420 from streptococcus mutans ua159
89c2hqbA_



not modelled 34.9 18 PDB header:transcription
Chain: A: PDB Molecule:transcriptional activator of comk gene;
PDBTitle: crystal structure of a transcriptional activator of comk2 gene from bacillus halodurans
90d1d1qa_



not modelled 34.8 14 Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:Phosphotyrosine protein phosphatases I
Family:Low-molecular-weight phosphotyrosine protein phosphatases
91c1y8qA_



not modelled 34.3 16 PDB header:ligase
Chain: A: PDB Molecule:ubiquitin-like 1 activating enzyme e1a;
PDBTitle: sumo e1 activating enzyme sae1-sae2-mg-atp complex
92d1iyea_



not modelled 34.2 18 Fold:D-aminoacid aminotransferase-like PLP-dependent enzymes
Superfamily:D-aminoacid aminotransferase-like PLP-dependent enzymes
Family:D-aminoacid aminotransferase-like PLP-dependent enzymes
93c3rpeA_



not modelled 34.0 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:modulator of drug activity b;
PDBTitle: 1.1 angstrom crystal structure of putative modulator of drug activity2 (mdab) from yersinia pestis co92.
94c1gx7A_



not modelled 34.0 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:periplasmic [fe] hydrogenase large subunit;
PDBTitle: best model of the electron transfer complex between2 cytochrome c3 and [fe]-hydrogenase
95c1a3wB_



not modelled 33.2 22 PDB header:transferase
Chain: B: PDB Molecule:pyruvate kinase;
PDBTitle: pyruvate kinase from saccharomyces cerevisiae complexed with fbp, pg,2 mn2+ and k+
96c3n8kG_



not modelled 32.8 16 PDB header:lyase
Chain: G: PDB Molecule:3-dehydroquinate dehydratase;
PDBTitle: type ii dehydroquinase from mycobacterium tuberculosis complexed with2 citrazinic acid
97c3jviA_



not modelled 32.6 15 PDB header:hydrolase
Chain: A: PDB Molecule:protein tyrosine phosphatase;
PDBTitle: product state mimic crystal structure of protein tyrosine phosphatase2 from entamoeba histolytica
98c2cwdA_



not modelled 32.3 26 PDB header:hydrolase
Chain: A: PDB Molecule:low molecular weight phosphotyrosine protein phosphatase;
PDBTitle: crystal structure of tt1001 protein from thermus thermophilus hb8
99c2rejA_



not modelled 32.3 23 PDB header:choline-binding protein
Chain: A: PDB Molecule:putative glycine betaine abc transporter protein;
PDBTitle: abc-transporter choline binding protein in unliganded semi-2 closed conformation
100d1s1ma1



not modelled 32.0 19 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
101c2akjA_



not modelled 31.6 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:ferredoxin--nitrite reductase, chloroplast;
PDBTitle: structure of spinach nitrite reductase
102c2an1D_



not modelled 31.3 24 PDB header:transferase
Chain: D: PDB Molecule:putative kinase;
PDBTitle: structural genomics, the crystal structure of a putative kinase from2 salmonella typhimurim lt2
103d1pvva2



not modelled 31.1 12 Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase
104c3lwzC_



not modelled 30.9 15 PDB header:lyase
Chain: C: PDB Molecule:3-dehydroquinate dehydratase;
PDBTitle: 1.65 angstrom resolution crystal structure of type ii 3-2 dehydroquinate dehydratase (aroq) from yersinia pestis
105c3hd6A_



not modelled 30.8 11 PDB header:membrane protein, transport protein
Chain: A: PDB Molecule:ammonium transporter rh type c;
PDBTitle: crystal structure of the human rhesus glycoprotein rhcg
106d1ekxa2



not modelled 30.6 13 Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase
107d1liua2



not modelled 30.1 18 Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Pyruvate kinase
108c3dmdA_



not modelled 29.8 19 PDB header:transport protein
Chain: A: PDB Molecule:signal recognition particle receptor;
PDBTitle: structures and conformations in solution of the signal recognition2 particle receptor from the archaeon pyrococcus furiosus
109c2rjoA_



not modelled 29.2 9 PDB header:signaling protein
Chain: A: PDB Molecule:twin-arginine translocation pathway signal protein;
PDBTitle: crystal structure of twin-arginine translocation pathway signal2 protein from burkholderia phytofirmans
110d1uqra_



not modelled 29.1 16 Fold:Flavodoxin-like
Superfamily:Type II 3-dehydroquinate dehydratase
Family:Type II 3-dehydroquinate dehydratase
111c3khdC_



not modelled 29.1 18 PDB header:transferase
Chain: C: PDB Molecule:pyruvate kinase;
PDBTitle: crystal structure of pff1300w.
112c2eq8C_



not modelled 28.8 31 PDB header:oxidoreductase
Chain: C: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide
PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdp
113d3c7ba3



not modelled 27.7 11 Fold:Nitrite and sulphite reductase 4Fe-4S domain-like
Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like
Family:Nitrite and sulphite reductase 4Fe-4S domain-like
114c1nekB_



not modelled 27.6 21 PDB header:oxidoreductase/electron transport
Chain: B: PDB Molecule:succinate dehydrogenase iron-sulfur protein;
PDBTitle: complex ii (succinate dehydrogenase) from e. coli with2 ubiquinone bound
115c3chgB_



not modelled 27.1 22 PDB header:ligand binding protein
Chain: B: PDB Molecule:glycine betaine-binding protein;
PDBTitle: the compatible solute-binding protein opuac from bacillus2 subtilis in complex with dmsa
116d2bcgg1



not modelled 26.8 18 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:GDI-like N domain
117c3t66A_



not modelled 26.8 13 PDB header:transport protein
Chain: A: PDB Molecule:nickel abc transporter (nickel-binding protein);
PDBTitle: crystal structure of nickel abc transporter from bacillus halodurans
118d2fz5a1



not modelled 26.7 19 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
119d1c0aa2



not modelled 26.5 20 Fold:DCoH-like
Superfamily:GAD domain-like
Family:GAD domain
120c2eq9C_



not modelled 25.3 24 PDB header:oxidoreductase
Chain: C: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide
PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdb

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0