08/01/2012 17:15:18 : INFO  : Run start: Sun Jan  8 17:15:18 GMT 2012
08/01/2012 17:15:20 : INFO  : Initialised job
08/01/2012 17:15:21 : INFO  : Renaming log file 'phyre2_20120108_171517.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/fcdb342c9470a1b6/phyre_20120108_171517.log'
08/01/2012 17:15:21 : INFO  : Initialised job:
Sequence
>batch____
MVLFYRAHWRDYKNDQVRIMMNLTTLTHRDALCLNARFTSREEAIHALTQRLAALGKISS
TEQFLEEVYRRESLGPTALGEGLAVPHGKTAAVKEAAFAVATLSEPLQWEGVDGPEAVDL
VVLLAIPPNEAGTTHMQLLTALTTRLADDEIRARIQSATTPDELLSALDDKGGTQPSASF
SNAPTIVCVTACPAGIAHTYMAAEYLEKAGRKLGVNVYVEKQGANGIEGRLTADQLNSAT
ACIFAAEVAIKESERFNGIPALSVPVAEPIRHAEALIQQALTLKRSDETRTVQQDTQPVK
SVKTELKQALLSGISFAVPLIVAGGTVLAVAVLLSQIFGLQDLFNEENSWLWMYRKLGGG
LLGILMVPVLAAYTAYSLADKPALAPGFAAGLAANMIGSGFLGAVVGGLIAGYLMRWVKN
HLRLSSKFNGFLTFYLYPVLGTLGAGSLMLFVVGEPVAWINNSLTAWLNGLSGSNALLLG
AILGFMCSFDLGGPVNKAAYAFCLGAMANGVYGPYAIFASVKMVSAFTVTASTMLAPRLF
KEFEIETGKSTWLLGLAGITEGAIPMAIEDPLRVIGSFVLGSMVTGAIVGAMNIGLSTPG
AGIFSLFLLHDNGAGGVMAAIGWFGAALVGAAISTAILLMWRRHAVKHGNYLTDGVMP

08/01/2012 17:15:22 : INFO  : Checked sequence
08/01/2012 17:15:23 : INFO  : Finding homologues with PSI-BLAST
08/01/2012 17:15:23 : INFO  : PSI-BLAST 3 iterations
08/01/2012 17:18:58 : INFO  : PSI-BLAST 5 iterations
08/01/2012 17:23:54 : INFO  : Finished PSI-BLAST
08/01/2012 17:23:55 : INFO  : Running Buildali to generate a3m file
08/01/2012 17:47:20 : INFO  : Converting to HMM
08/01/2012 17:47:30 : INFO  : Calibrating HMM
08/01/2012 17:47:55 : INFO  : Searching HMM database
08/01/2012 18:02:21 : INFO  : Finished buildali
08/01/2012 18:02:23 : INFO  : Predicting secondary structure
08/01/2012 18:02:30 : INFO  : Predicted secondary structure (PSI-Pred)
08/01/2012 18:02:30 : INFO  : Predicting Disordered regions
08/01/2012 18:02:33 : INFO  : Predicted Disorder (Disopred)
08/01/2012 18:02:34 : INFO  : Running memsat_svm check
08/01/2012 18:06:37 : INFO  : Running memsat_svm full
08/01/2012 18:08:22 : INFO  : Predicted Transmembrane (memsat_svm) ID 'fcdb342c9470a1b6'
08/01/2012 18:08:23 : INFO  : Initialising fold library search
08/01/2012 18:08:25 : INFO  : Initialised search input
08/01/2012 18:08:26 : INFO  : Building Ensemble models
08/01/2012 18:08:29 : INFO  : Building hh.d2r48a1.model.1.pdb
08/01/2012 18:08:38 : INFO  : Building hh.d2r4qa1.model.2.pdb
08/01/2012 18:08:45 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/fcdb342c9470a1b6/hh.d2r4qa1.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/fcdb342c9470a1b6/d2r4qa1.3.pdb
08/01/2012 18:08:47 : INFO  : Building hh.c3qnqD_.model.3.pdb
08/01/2012 18:08:55 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/fcdb342c9470a1b6/hh.c3qnqD_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/fcdb342c9470a1b6/c3qnqD_.4.pdb
08/01/2012 18:08:57 : INFO  : Building hh.c3urrB_.model.4.pdb
08/01/2012 18:09:04 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/fcdb342c9470a1b6/hh.c3urrB_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/fcdb342c9470a1b6/c3urrB_.5.pdb
08/01/2012 18:09:07 : INFO  : Building hh.c2a0jA_.model.5.pdb
08/01/2012 18:09:15 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/fcdb342c9470a1b6/hh.c2a0jA_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/fcdb342c9470a1b6/c2a0jA_.6.pdb
08/01/2012 18:09:17 : INFO  : Building hh.d1a6ja_.model.6.pdb
08/01/2012 18:09:25 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/fcdb342c9470a1b6/hh.d1a6ja_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/fcdb342c9470a1b6/d1a6ja_.7.pdb
08/01/2012 18:09:28 : INFO  : Building hh.c3oxpB_.model.7.pdb
08/01/2012 18:09:35 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/fcdb342c9470a1b6/hh.c3oxpB_.model.7.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/fcdb342c9470a1b6/c3oxpB_.8.pdb
08/01/2012 18:09:38 : INFO  : Building hh.c3oxpA_.model.8.pdb
08/01/2012 18:09:45 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/fcdb342c9470a1b6/hh.c3oxpA_.model.8.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/fcdb342c9470a1b6/c3oxpA_.9.pdb
08/01/2012 18:09:48 : INFO  : Building hh.c2oq3A_.model.9.pdb
08/01/2012 18:09:55 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/fcdb342c9470a1b6/hh.c2oq3A_.model.9.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/fcdb342c9470a1b6/c2oq3A_.10.pdb
08/01/2012 18:09:58 : INFO  : Building hh.c2ohiB_.model.10.pdb
08/01/2012 18:10:06 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/fcdb342c9470a1b6/hh.c2ohiB_.model.10.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/fcdb342c9470a1b6/c2ohiB_.35.pdb
08/01/2012 18:10:09 : INFO  : Building d2r48a1.1.pdb
08/01/2012 18:10:18 : INFO  : Building c2kyrA_.2.pdb
08/01/2012 18:10:27 : INFO  : Building d2r4qa1.3.pdb
08/01/2012 18:10:36 : INFO  : Building c3qnqD_.4.pdb
08/01/2012 18:10:45 : INFO  : Building c3urrB_.5.pdb
08/01/2012 18:10:54 : INFO  : Building c2a0jA_.6.pdb
08/01/2012 18:11:03 : INFO  : Building d1a6ja_.7.pdb
08/01/2012 18:11:12 : INFO  : Building c3oxpB_.8.pdb
08/01/2012 18:11:20 : INFO  : Building c3oxpA_.9.pdb
08/01/2012 18:11:28 : INFO  : Building c2oq3A_.10.pdb
08/01/2012 18:11:36 : INFO  : Building c3bjvA_.11.pdb
08/01/2012 18:11:45 : INFO  : Building c2oqtD_.12.pdb
08/01/2012 18:11:52 : INFO  : Building d1a3aa_.13.pdb
08/01/2012 18:11:59 : INFO  : Building d1xiza_.14.pdb
08/01/2012 18:12:07 : INFO  : Building c1hynQ_.15.pdb
08/01/2012 18:12:15 : INFO  : Building d1hynp_.16.pdb
08/01/2012 18:12:23 : INFO  : Building c1tvmA_.17.pdb
08/01/2012 18:12:32 : INFO  : Building d2a5la1.18.pdb
08/01/2012 18:12:39 : INFO  : Building d1ycga1.19.pdb
08/01/2012 18:12:47 : INFO  : Building d1iiba_.20.pdb
08/01/2012 18:14:06 : INFO  : Finished HH model building
08/01/2012 18:14:07 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
08/01/2012 18:14:56 : INFO  : html domain output complete ID 'fcdb342c9470a1b6'
08/01/2012 18:46:11 : INFO  : Run end  : Sun Jan  8 18:46:10 GMT 2012
