Phyre 2 Results for P54745

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Email | l.a.kelley@imperial.ac.uk
Description | P54745
Date | Thu Jan 5 12:06:03 GMT 2012
Unique Job ID | fcdb342c9470a1b6

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d2r48a1
Top template information
Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Fructose specific IIB subunit-like
Confidence and coverage
Confidence: | 100.0% | Coverage: | 15%
101 residues ( 15% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
608 residues ( 92%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | V | L | F | Y | R | A | H | W | R | D | Y | K | N | D | Q | V | R | I | M | M | N | L | T | T | L | T | H | R | D | A | L | C | L | N | A | R | F | T | S | R | E | E | A | I | H | A | L | T | Q | R | L | A | A | L | G | K | I | S | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? |  |  |  |  |  |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | T | E | Q | F | L | E | E | V | Y | R | R | E | S | L | G | P | T | A | L | G | E | G | L | A | V | P | H | G | K | T | A | A | V | K | E | A | A | F | A | V | A | T | L | S | E | P | L | Q | W | E | G | V | D | G | P | E | A | V | D | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | V | V | L | L | A | I | P | P | N | E | A | G | T | T | H | M | Q | L | L | T | A | L | T | T | R | L | A | D | D | E | I | R | A | R | I | Q | S | A | T | T | P | D | E | L | L | S | A | L | D | D | K | G | G | T | Q | P | S | A | S | F
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | S | N | A | P | T | I | V | C | V | T | A | C | P | A | G | I | A | H | T | Y | M | A | A | E | Y | L | E | K | A | G | R | K | L | G | V | N | V | Y | V | E | K | Q | G | A | N | G | I | E | G | R | L | T | A | D | Q | L | N | S | A | T
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | A | C | I | F | A | A | E | V | A | I | K | E | S | E | R | F | N | G | I | P | A | L | S | V | P | V | A | E | P | I | R | H | A | E | A | L | I | Q | Q | A | L | T | L | K | R | S | D | E | T | R | T | V | Q | Q | D | T | Q | P | V | K
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360
Sequence |  | S | V | K | T | E | L | K | Q | A | L | L | S | G | I | S | F | A | V | P | L | I | V | A | G | G | T | V | L | A | V | A | V | L | L | S | Q | I | F | G | L | Q | D | L | F | N | E | E | N | S | W | L | W | M | Y | R | K | L | G | G | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420
Sequence |  | L | L | G | I | L | M | V | P | V | L | A | A | Y | T | A | Y | S | L | A | D | K | P | A | L | A | P | G | F | A | A | G | L | A | A | N | M | I | G | S | G | F | L | G | A | V | V | G | G | L | I | A | G | Y | L | M | R | W | V | K | N
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480
Sequence |  | H | L | R | L | S | S | K | F | N | G | F | L | T | F | Y | L | Y | P | V | L | G | T | L | G | A | G | S | L | M | L | F | V | V | G | E | P | V | A | W | I | N | N | S | L | T | A | W | L | N | G | L | S | G | S | N | A | L | L | L | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . | . | . | . | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | . | . | . | . | . | . | . | . | 540
Sequence |  | A | I | L | G | F | M | C | S | F | D | L | G | G | P | V | N | K | A | A | Y | A | F | C | L | G | A | M | A | N | G | V | Y | G | P | Y | A | I | F | A | S | V | K | M | V | S | A | F | T | V | T | A | S | T | M | L | A | P | R | L | F
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 550 | . | . | . | . | . | . | . | . | . | 560 | . | . | . | . | . | . | . | . | . | 570 | . | . | . | . | . | . | . | . | . | 580 | . | . | . | . | . | . | . | . | . | 590 | . | . | . | . | . | . | . | . | . | 600
Sequence |  | K | E | F | E | I | E | T | G | K | S | T | W | L | L | G | L | A | G | I | T | E | G | A | I | P | M | A | I | E | D | P | L | R | V | I | G | S | F | V | L | G | S | M | V | T | G | A | I | V | G | A | M | N | I | G | L | S | T | P | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 610 | . | . | . | . | . | . | . | . | . | 620 | . | . | . | . | . | . | . | . | . | 630 | . | . | . | . | . | . | . | . | . | 640 | . | . | . | . | . | . | . | . | . | 650 | . | . | . | . | . | . | . | .
Sequence |  | A | G | I | F | S | L | F | L | L | H | D | N | G | A | G | G | V | M | A | A | I | G | W | F | G | A | A | L | V | G | A | A | I | S | T | A | I | L | L | M | W | R | R | H | A | V | K | H | G | N | Y | L | T | D | G | V | M | P
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? |  | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d2r48a1 |

### PDB 2r48 chain A domain 1

Region: 185 - 286
Aligned: 101
Modelled: 102
Confidence: 100.0%
Identity: 46%
Fold: Phosphotyrosine protein phosphatases I-like
Superfamily: PTS system IIB component-like
Family: PTS system, Fructose specific IIB subunit-like

Phyre2
2 |
| c2kyrA_ |

### PDB 2kyr chain A

Region: 183 - 282
Aligned: 100
Modelled: 100
Confidence: 100.0%
Identity: 35%
PDB header:transferase
Chain: A: PDB Molecule:fructose-like phosphotransferase enzyme iib component 1;
PDBTitle: solution structure of enzyme iib subunit of pts system from2 escherichia coli k12. northeast structural genomics consortium target3 er315/ontario center for structural proteomics target ec0544

Phyre2
3 |
| d2r4qa1 |

### PDB 2r4q chain A domain 1

Region: 185 - 288
Aligned: 101
Modelled: 104
Confidence: 100.0%
Identity: 42%
Fold: Phosphotyrosine protein phosphatases I-like
Superfamily: PTS system IIB component-like
Family: PTS system, Fructose specific IIB subunit-like

Phyre2
4 |
| c3qnqD_ |

### PDB 3qnq chain D

Region: 303 - 656
Aligned: 353
Modelled: 354
Confidence: 100.0%
Identity: 13%
PDB header:membrane protein, transport protein
Chain: D: PDB Molecule:pts system, cellobiose-specific iic component;
PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system

Phyre2
5 |
| c3urrB_ |

### PDB 3urr chain B

Region: 19 - 172
Aligned: 149
Modelled: 154
Confidence: 100.0%
Identity: 27%
PDB header:transferase
Chain: B: PDB Molecule:pts iia-like nitrogen-regulatory protein ptsn;
PDBTitle: structure of pts iia-like nitrogen-regulatory protein ptsn (bth_i0484)2 (ptsn)

Phyre2
6 |
| c2a0jA_ |

### PDB 2a0j chain A

Region: 23 - 168
Aligned: 143
Modelled: 146
Confidence: 100.0%
Identity: 28%
PDB header:transferase
Chain: A: PDB Molecule:pts system, nitrogen regulatory iia protein;
PDBTitle: crystal structure of nitrogen regulatory protein iia-ntr from2 neisseria meningitidis

Phyre2
7 |
| d1a6ja_ |

### PDB 1a6j chain A

Region: 21 - 172
Aligned: 149
Modelled: 152
Confidence: 100.0%
Identity: 26%
Fold: Phoshotransferase/anion transport protein
Superfamily: Phoshotransferase/anion transport protein
Family: IIA domain of mannitol-specific and ntr phosphotransferase EII

Phyre2
8 |
| c3oxpB_ |

### PDB 3oxp chain B

Region: 22 - 171
Aligned: 144
Modelled: 149
Confidence: 100.0%
Identity: 22%
PDB header:transferase
Chain: B: PDB Molecule:phosphotransferase enzyme ii, a component;
PDBTitle: structure of phosphotransferase enzyme ii, a component from yersinia2 pestis co92 at 1.2 a resolution

Phyre2
9 |
| c3oxpA_ |

### PDB 3oxp chain A

Region: 22 - 171
Aligned: 144
Modelled: 149
Confidence: 100.0%
Identity: 22%
PDB header:transferase
Chain: A: PDB Molecule:phosphotransferase enzyme ii, a component;
PDBTitle: structure of phosphotransferase enzyme ii, a component from yersinia2 pestis co92 at 1.2 a resolution

Phyre2
10 |
| c2oq3A_ |

### PDB 2oq3 chain A

Region: 21 - 170
Aligned: 143
Modelled: 148
Confidence: 99.9%
Identity: 20%
PDB header:transferase
Chain: A: PDB Molecule:mannitol-specific cryptic phosphotransferase
PDBTitle: solution structure of the mannitol- specific cryptic2 phosphotransferase enzyme iia cmtb from escherichia coli

Phyre2
11 |
| c3bjvA_ |

### PDB 3bjv chain A

Region: 21 - 178
Aligned: 150
Modelled: 158
Confidence: 99.9%
Identity: 21%
PDB header:transferase
Chain: A: PDB Molecule:rmpa;
PDBTitle: the crystal structure of a putative pts iia(ptxa) from streptococcus2 mutans

Phyre2
12 |
| c2oqtD_ |

### PDB 2oqt chain D

Region: 23 - 175
Aligned: 145
Modelled: 153
Confidence: 99.9%
Identity: 19%
PDB header:transferase
Chain: D: PDB Molecule:hypothetical protein spy0176;
PDBTitle: structural genomics, the crystal structure of a putative2 pts iia domain from streptococcus pyogenes m1 gas

Phyre2
13 |
| d1a3aa_ |

### PDB 1a3a chain A

Region: 27 - 172
Aligned: 139
Modelled: 146
Confidence: 99.9%
Identity: 29%
Fold: Phoshotransferase/anion transport protein
Superfamily: Phoshotransferase/anion transport protein
Family: IIA domain of mannitol-specific and ntr phosphotransferase EII

Phyre2
14 |
| d1xiza_ |

### PDB 1xiz chain A

Region: 23 - 173
Aligned: 148
Modelled: 151
Confidence: 99.9%
Identity: 22%
Fold: Phoshotransferase/anion transport protein
Superfamily: Phoshotransferase/anion transport protein
Family: IIA domain of mannitol-specific and ntr phosphotransferase EII

Phyre2
15 |
| c1hynQ_ |

### PDB 1hyn chain Q

Region: 17 - 171
Aligned: 154
Modelled: 155
Confidence: 98.3%
Identity: 18%
PDB header:membrane protein
Chain: Q: PDB Molecule:band 3 anion transport protein;
PDBTitle: crystal structure of the cytoplasmic domain of human2 erythrocyte band-3 protein

Phyre2
16 |
| d1hynp_ |

### PDB 1hyn chain P

Region: 17 - 171
Aligned: 154
Modelled: 155
Confidence: 98.3%
Identity: 21%
Fold: Phoshotransferase/anion transport protein
Superfamily: Phoshotransferase/anion transport protein
Family: Anion transport protein, cytoplasmic domain

Phyre2
17 |
| c1tvmA_ |

### PDB 1tvm chain A

Region: 172 - 282
Aligned: 101
Modelled: 111
Confidence: 96.6%
Identity: 22%
PDB header:transferase
Chain: A: PDB Molecule:pts system, galactitol-specific iib component;
PDBTitle: nmr structure of enzyme gatb of the galactitol-specific2 phosphoenolpyruvate-dependent phosphotransferase system

Phyre2
18 |
| d2a5la1 |

### PDB 2a5l chain A domain 1

Region: 184 - 246
Aligned: 61
Modelled: 63
Confidence: 96.3%
Identity: 16%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: WrbA-like

Phyre2
19 |
| d1ycga1 |

### PDB 1ycg chain A domain 1

Region: 182 - 310
Aligned: 125
Modelled: 129
Confidence: 95.2%
Identity: 12%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: Flavodoxin-related

Phyre2
20 |
| d1iiba_ |

### PDB 1iib chain A

Region: 192 - 282
Aligned: 83
Modelled: 91
Confidence: 94.7%
Identity: 13%
Fold: Phosphotyrosine protein phosphatases I-like
Superfamily: PTS system IIB component-like
Family: PTS system, Lactose/Cellobiose specific IIB subunit

Phyre2
21 |
22 |
23 |
24 |
25 |
26 |
27 |
28 |
29 |
30 |
31 |
32 |
33 |
34 |
35 |
| c2ohiB_ |

### PDB 2ohi chain B

Region: 159 - 310
Aligned: 142
Modelled: 142
Confidence: 82.9%
Identity: 14%
PDB header:oxidoreductase
Chain: B: PDB Molecule:type a flavoprotein fpra;
PDBTitle: crystal structure of coenzyme f420h2 oxidase (fpra), a diiron2 flavoprotein, reduced state

Phyre2
36 |
37 |
38 |
39 |
40 |
41 |
42 |
43 |
44 |
45 |
46 |
47 |
48 |
49 |
50 |
51 |
52 |
53 |
54 |
55 |
56 |
57 |
58 |
59 |
60 |
61 |
62 |
63 |
64 |
65 |
66 |
67 |
68 |
69 |
70 |
71 |
72 |
73 |
74 |
75 |
76 |
77 |
78 |
79 |
80 |
81 |
82 |
83 |
84 |
85 |
86 |
87 |
88 |
89 |
90 |
91 |
92 |
93 |
94 |
95 |
96 |
97 |
98 |
99 |
100 |
101 |
102 |
103 |
104 |
105 |
106 |
107 |
108 |
109 |
110 |
111 |
112 |
113 |
114 |
115 |
116 |
117 |
118 |
119 |
120 |
121 |
122 |
123 |
124 |
125 |
126 |
127 |
128 |
129 |
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131 |
132 |
133 |
134 |
135 |
136 |
137 |
138 |
139 |
140 |
141 |
142 |
143 |
144 |
145 |
146 |
147 |
148 |
149 |
150 |
151 |
152 |
153 |
154 |
155 |
156 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d2r48a1 |
|  | 100.0 | 46 | Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Fructose specific IIB subunit-like
2 | c2kyrA_ |
|  | 100.0 | 35 | PDB header:transferase Chain: A: PDB Molecule:fructose-like phosphotransferase enzyme iib component 1; PDBTitle: solution structure of enzyme iib subunit of pts system from2 escherichia coli k12. northeast structural genomics consortium target3 er315/ontario center for structural proteomics target ec0544
3 | d2r4qa1 |
|  | 100.0 | 42 | Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Fructose specific IIB subunit-like
4 | c3qnqD_ |
|  | 100.0 | 13 | PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system
5 | c3urrB_ |
|  | 100.0 | 27 | PDB header:transferase Chain: B: PDB Molecule:pts iia-like nitrogen-regulatory protein ptsn; PDBTitle: structure of pts iia-like nitrogen-regulatory protein ptsn (bth_i0484)2 (ptsn)
6 | c2a0jA_ |
|  | 100.0 | 28 | PDB header:transferase Chain: A: PDB Molecule:pts system, nitrogen regulatory iia protein; PDBTitle: crystal structure of nitrogen regulatory protein iia-ntr from2 neisseria meningitidis
7 | d1a6ja_ |
|  | 100.0 | 26 | Fold:Phoshotransferase/anion transport protein Superfamily:Phoshotransferase/anion transport protein Family:IIA domain of mannitol-specific and ntr phosphotransferase EII
8 | c3oxpB_ |
|  | 100.0 | 22 | PDB header:transferase Chain: B: PDB Molecule:phosphotransferase enzyme ii, a component; PDBTitle: structure of phosphotransferase enzyme ii, a component from yersinia2 pestis co92 at 1.2 a resolution
9 | c3oxpA_ |
|  | 100.0 | 22 | PDB header:transferase Chain: A: PDB Molecule:phosphotransferase enzyme ii, a component; PDBTitle: structure of phosphotransferase enzyme ii, a component from yersinia2 pestis co92 at 1.2 a resolution
10 | c2oq3A_ |
|  | 99.9 | 20 | PDB header:transferase Chain: A: PDB Molecule:mannitol-specific cryptic phosphotransferase PDBTitle: solution structure of the mannitol- specific cryptic2 phosphotransferase enzyme iia cmtb from escherichia coli
11 | c3bjvA_ |
|  | 99.9 | 21 | PDB header:transferase Chain: A: PDB Molecule:rmpa; PDBTitle: the crystal structure of a putative pts iia(ptxa) from streptococcus2 mutans
12 | c2oqtD_ |
|  | 99.9 | 19 | PDB header:transferase Chain: D: PDB Molecule:hypothetical protein spy0176; PDBTitle: structural genomics, the crystal structure of a putative2 pts iia domain from streptococcus pyogenes m1 gas
13 | d1a3aa_ |
|  | 99.9 | 29 | Fold:Phoshotransferase/anion transport protein Superfamily:Phoshotransferase/anion transport protein Family:IIA domain of mannitol-specific and ntr phosphotransferase EII
14 | d1xiza_ |
|  | 99.9 | 22 | Fold:Phoshotransferase/anion transport protein Superfamily:Phoshotransferase/anion transport protein Family:IIA domain of mannitol-specific and ntr phosphotransferase EII
15 | c1hynQ_ |
|  | 98.3 | 18 | PDB header:membrane protein Chain: Q: PDB Molecule:band 3 anion transport protein; PDBTitle: crystal structure of the cytoplasmic domain of human2 erythrocyte band-3 protein
16 | d1hynp_ |
|  | 98.3 | 21 | Fold:Phoshotransferase/anion transport protein Superfamily:Phoshotransferase/anion transport protein Family:Anion transport protein, cytoplasmic domain
17 | c1tvmA_ |
|  | 96.6 | 22 | PDB header:transferase Chain: A: PDB Molecule:pts system, galactitol-specific iib component; PDBTitle: nmr structure of enzyme gatb of the galactitol-specific2 phosphoenolpyruvate-dependent phosphotransferase system
18 | d2a5la1 |
|  | 96.3 | 16 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like
19 | d1ycga1 |
|  | 95.2 | 12 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related
20 | d1iiba_ |
|  | 94.7 | 13 | Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Lactose/Cellobiose specific IIB subunit
21 | c3czcA_ |
| not modelled | 94.7 | 13 | PDB header:transferase Chain: A: PDB Molecule:rmpb; PDBTitle: the crystal structure of a putative pts iib(ptxb) from2 streptococcus mutans
22 | c3nbmA_ |
| not modelled | 94.6 | 14 | PDB header:transferase Chain: A: PDB Molecule:pts system, lactose-specific iibc components; PDBTitle: the lactose-specific iib component domain structure of the2 phosphoenolpyruvate:carbohydrate phosphotransferase system (pts) from3 streptococcus pneumoniae.
23 | c3fniA_ |
| not modelled | 94.4 | 11 | PDB header:oxidoreductase Chain: A: PDB Molecule:putative diflavin flavoprotein a 3; PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a
24 | d2arka1 |
| not modelled | 94.1 | 17 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like
25 | c2l2qA_ |
| not modelled | 93.9 | 18 | PDB header:transferase Chain: A: PDB Molecule:pts system, cellobiose-specific iib component (cela); PDBTitle: solution structure of cellobiose-specific phosphotransferase iib2 component protein from borrelia burgdorferi
26 | d1ydga_ |
| not modelled | 93.5 | 28 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like
27 | d1vkra_ |
| not modelled | 93.4 | 15 | Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Lactose/Cellobiose specific IIB subunit
28 | c1vkrA_ |
| not modelled | 93.4 | 15 | PDB header:transferase Chain: A: PDB Molecule:mannitol-specific pts system enzyme iiabc components; PDBTitle: structure of iib domain of the mannitol-specific permease enzyme ii
29 | d1e5da1 |
| not modelled | 90.6 | 18 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related
30 | c3p0rA_ |
| not modelled | 88.2 | 26 | PDB header:oxidoreductase Chain: A: PDB Molecule:azoreductase; PDBTitle: crystal structure of azoreductase from bacillus anthracis str. sterne
31 | d1vmea1 |
| not modelled | 85.9 | 8 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related
32 | c2zkiH_ |
| not modelled | 83.4 | 16 | PDB header:transcription Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872)
33 | c3snoA_ |
| not modelled | 83.4 | 24 | PDB header:transferase Chain: A: PDB Molecule:hypothetical aminotransferase; PDBTitle: crystal structure of a hypothetical aminotransferase (ncgl2491) from2 corynebacterium glutamicum atcc 13032 kitasato at 1.60 a resolution
34 | c3d7nA_ |
| not modelled | 83.3 | 27 | PDB header:electron transport Chain: A: PDB Molecule:flavodoxin, wrba-like protein; PDBTitle: the crystal structure of the flavodoxin, wrba-like protein from2 agrobacterium tumefaciens
35 | c2ohiB_ |
|  | 82.9 | 14 | PDB header:oxidoreductase Chain: B: PDB Molecule:type a flavoprotein fpra; PDBTitle: crystal structure of coenzyme f420h2 oxidase (fpra), a diiron2 flavoprotein, reduced state
36 | d1u7ga_ |
| not modelled | 82.8 | 20 | Fold:Ammonium transporter Superfamily:Ammonium transporter Family:Ammonium transporter
37 | c3klbA_ |
| not modelled | 80.8 | 16 | PDB header:flavoprotein Chain: A: PDB Molecule:putative flavoprotein; PDBTitle: crystal structure of putative flavoprotein in complex with fmn2 (yp_213683.1) from bacteroides fragilis nctc 9343 at 1.75 a3 resolution
38 | c3rh0A_ |
| not modelled | 80.0 | 10 | PDB header:oxidoreductase Chain: A: PDB Molecule:arsenate reductase; PDBTitle: corynebacterium glutamicum mycothiol/mycoredoxin1-dependent arsenate2 reductase cg_arsc2
39 | d1sqsa_ |
| not modelled | 80.0 | 12 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Hypothetical protein SP1951
40 | c3b6iB_ |
| not modelled | 77.8 | 23 | PDB header:flavoprotein Chain: B: PDB Molecule:flavoprotein wrba; PDBTitle: wrba from escherichia coli, native structure
41 | c1zggA_ |
| not modelled | 77.4 | 15 | PDB header:hydrolase Chain: A: PDB Molecule:putative low molecular weight protein-tyrosine- PDBTitle: solution structure of a low molecular weight protein2 tyrosine phosphatase from bacillus subtilis
42 | c3f2vA_ |
| not modelled | 77.2 | 18 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:general stress protein 14; PDBTitle: crystal structure of the general stress protein 142 (tde0354) in complex with fmn from treponema denticola,3 northeast structural genomics consortium target tdr58.
43 | c1ychD_ |
| not modelled | 77.0 | 13 | PDB header:oxidoreductase Chain: D: PDB Molecule:nitric oxide reductase; PDBTitle: x-ray crystal structures of moorella thermoacetica fpra.2 novel diiron site structure and mechanistic insights into3 a scavenging nitric oxide reductase
44 | c2q9uB_ |
| not modelled | 77.0 | 16 | PDB header:oxidoreductase Chain: B: PDB Molecule:a-type flavoprotein; PDBTitle: crystal structure of the flavodiiron protein from giardia2 intestinalis
45 | d1t0ba_ |
| not modelled | 70.3 | 26 | Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:ThuA-like
46 | c2q62A_ |
| not modelled | 70.0 | 12 | PDB header:flavoprotein Chain: A: PDB Molecule:arsh; PDBTitle: crystal structure of arsh from sinorhizobium meliloti
47 | c1e5dA_ |
| not modelled | 68.8 | 14 | PDB header:oxidoreductase Chain: A: PDB Molecule:rubredoxin\:oxygen oxidoreductase; PDBTitle: rubredoxin oxygen:oxidoreductase (roo) from anaerobe2 desulfovibrio gigas
48 | c1vmeB_ |
| not modelled | 64.4 | 11 | PDB header:electron transport Chain: B: PDB Molecule:flavoprotein; PDBTitle: crystal structure of flavoprotein (tm0755) from thermotoga maritima at2 1.80 a resolution
49 | c1y8qD_ |
| not modelled | 61.3 | 8 | PDB header:ligase Chain: D: PDB Molecule:ubiquitin-like 2 activating enzyme e1b; PDBTitle: sumo e1 activating enzyme sae1-sae2-mg-atp complex
50 | c3kydB_ |
| not modelled | 61.3 | 5 | PDB header:ligase Chain: B: PDB Molecule:sumo-activating enzyme subunit 2; PDBTitle: human sumo e1~sumo1-amp tetrahedral intermediate mimic
51 | d5nula_ |
| not modelled | 57.6 | 23 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related
52 | c3h9gA_ |
| not modelled | 56.7 | 13 | PDB header:transferase/antibiotic Chain: A: PDB Molecule:mccb protein; PDBTitle: crystal structure of e. coli mccb + mcca-n7isoasn
53 | d1acoa2 |
| not modelled | 55.1 | 8 | Fold:Aconitase iron-sulfur domain Superfamily:Aconitase iron-sulfur domain Family:Aconitase iron-sulfur domain
54 | d2qwxa1 |
| not modelled | 53.2 | 22 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase
55 | c2v9cA_ |
| not modelled | 53.0 | 31 | PDB header:oxidoreductase Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase 1; PDBTitle: x-ray crystallographic structure of a pseudomonas2 aeruginosa azoreductase in complex with methyl red.
56 | c3izcs_ |
| not modelled | 52.5 | 18 | PDB header:ribosome Chain: S: PDB Molecule:60s ribosomal protein rpl20 (l18ae); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
57 | d2b3ya2 |
| not modelled | 51.5 | 26 | Fold:Aconitase iron-sulfur domain Superfamily:Aconitase iron-sulfur domain Family:Aconitase iron-sulfur domain
58 | c3k9cA_ |
| not modelled | 51.2 | 15 | PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, laci family protein; PDBTitle: crystal structure of laci transcriptional regulator from rhodococcus2 species.
59 | c3hlyA_ |
| not modelled | 50.1 | 12 | PDB header:flavoprotein Chain: A: PDB Molecule:flavodoxin-like domain; PDBTitle: crystal structure of the flavodoxin-like domain from2 synechococcus sp q5mzp6_synp6 protein. northeast structural3 genomics consortium target snr135d.
60 | d1qrda_ |
| not modelled | 50.0 | 24 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase
61 | c3cswB_ |
| not modelled | 49.0 | 13 | PDB header:transferase Chain: B: PDB Molecule:putative branched-chain-amino-acid aminotransferase; PDBTitle: crystal structure of a putative branched-chain amino acid2 aminotransferase (tm0831) from thermotoga maritima at 2.15 a3 resolution
62 | c2ad5B_ |
| not modelled | 49.0 | 27 | PDB header:ligase Chain: B: PDB Molecule:ctp synthase; PDBTitle: mechanisms of feedback regulation and drug resistance of ctp2 synthetases: structure of the e. coli ctps/ctp complex at 2.8-3 angstrom resolution.
63 | d1jw9b_ |
| not modelled | 48.1 | 13 | Fold:Activating enzymes of the ubiquitin-like proteins Superfamily:Activating enzymes of the ubiquitin-like proteins Family:Molybdenum cofactor biosynthesis protein MoeB
64 | c1zj8B_ |
| not modelled | 47.2 | 18 | PDB header:oxidoreductase Chain: B: PDB Molecule:probable ferredoxin-dependent nitrite reductase nira; PDBTitle: structure of mycobacterium tuberculosis nira protein
65 | c3iz5s_ |
| not modelled | 47.2 | 14 | PDB header:ribosome Chain: S: PDB Molecule:60s ribosomal protein l18a (l18ae); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
66 | c5acnA_ |
| not modelled | 47.0 | 8 | PDB header:lyase(carbon-oxygen) Chain: A: PDB Molecule:aconitase; PDBTitle: structure of activated aconitase. formation of the (4fe-4s)2 cluster in the crystal
67 | c3c1iA_ |
| not modelled | 46.8 | 17 | PDB header:transport protein Chain: A: PDB Molecule:ammonia channel; PDBTitle: substrate binding, deprotonation and selectivity at the2 periplasmic entrance of the e. coli ammonia channel amtb
68 | c3djeA_ |
| not modelled | 44.5 | 15 | PDB header:oxidoreductase Chain: A: PDB Molecule:fructosyl amine: oxygen oxidoreductase; PDBTitle: crystal structure of the deglycating enzyme fructosamine2 oxidase from aspergillus fumigatus (amadoriase ii) in3 complex with fsa
69 | c1wrvB_ |
| not modelled | 44.5 | 18 | PDB header:transferase Chain: B: PDB Molecule:branched-chain amino acid aminotransferase; PDBTitle: crystal structure of t.th.hb8 branched-chain amino acid2 aminotransferase
70 | c1jrxA_ |
| not modelled | 42.9 | 10 | PDB header:oxidoreductase Chain: A: PDB Molecule:flavocytochrome c; PDBTitle: crystal structure of arg402ala mutant flavocytochrome c32 from shewanella frigidimarina
71 | c2b2hA_ |
| not modelled | 42.2 | 20 | PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter; PDBTitle: ammonium transporter amt-1 from a. fulgidus (as)
72 | c3fvwA_ |
| not modelled | 40.9 | 13 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative nad(p)h-dependent fmn reductase; PDBTitle: crystal structure of the q8dwd8_strmu protein from2 streptococcus mutans. northeast structural genomics3 consortium target smr99.
73 | c3o1hB_ |
| not modelled | 40.0 | 25 | PDB header:signaling protein Chain: B: PDB Molecule:periplasmic protein tort; PDBTitle: crystal structure of the tors sensor domain - tort complex in the2 presence of tmao
74 | c2gi4A_ |
| not modelled | 39.9 | 25 | PDB header:hydrolase Chain: A: PDB Molecule:possible phosphotyrosine protein phosphatase; PDBTitle: solution structure of the low molecular weight protein2 tyrosine phosphatase from campylobacter jejuni.
75 | d1rtta_ |
| not modelled | 39.8 | 16 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase
76 | d1t5ba_ |
| not modelled | 39.8 | 21 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase
77 | c3ry3B_ |
| not modelled | 39.7 | 22 | PDB header:transport protein Chain: B: PDB Molecule:putative solute-binding protein; PDBTitle: putative solute-binding protein from yersinia pestis.
78 | c1qo8A_ |
| not modelled | 39.3 | 11 | PDB header:oxidoreductase Chain: A: PDB Molecule:flavocytochrome c3 fumarate reductase; PDBTitle: the structure of the open conformation of a flavocytochrome2 c3 fumarate reductase
79 | c3edoA_ |
| not modelled | 39.0 | 11 | PDB header:flavoprotein Chain: A: PDB Molecule:putative trp repressor binding protein; PDBTitle: crystal structure of flavoprotein in complex with fmn2 (yp_193882.1) from lactobacillus acidophilus ncfm at 1.203 a resolution
80 | d1h05a_ |
| not modelled | 38.8 | 16 | Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase
81 | c1zfnA_ |
| not modelled | 38.4 | 10 | PDB header:transferase Chain: A: PDB Molecule:adenylyltransferase thif; PDBTitle: structural analysis of escherichia coli thif
82 | c2b76N_ |
| not modelled | 38.3 | 7 | PDB header:oxidoreductase Chain: N: PDB Molecule:fumarate reductase iron-sulfur protein; PDBTitle: e. coli quinol fumarate reductase frda e49q mutation
83 | c2hpvA_ |
| not modelled | 37.5 | 19 | PDB header:oxidoreductase Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase; PDBTitle: crystal structure of fmn-dependent azoreductase from enterococcus2 faecalis
84 | c2b3yB_ |
| not modelled | 37.2 | 24 | PDB header:lyase Chain: B: PDB Molecule:iron-responsive element binding protein 1; PDBTitle: structure of a monoclinic crystal form of human cytosolic aconitase2 (irp1)
85 | d2gk3a1 |
| not modelled | 36.9 | 23 | Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:STM3548-like
86 | d1gtza_ |
| not modelled | 35.8 | 18 | Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase
87 | d1gqoa_ |
| not modelled | 35.3 | 11 | Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase
88 | c3lcmB_ |
| not modelled | 35.3 | 20 | PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of smu.1420 from streptococcus mutans ua159
89 | c2hqbA_ |
| not modelled | 34.9 | 18 | PDB header:transcription Chain: A: PDB Molecule:transcriptional activator of comk gene; PDBTitle: crystal structure of a transcriptional activator of comk2 gene from bacillus halodurans
90 | d1d1qa_ |
| not modelled | 34.8 | 14 | Fold:Phosphotyrosine protein phosphatases I-like Superfamily:Phosphotyrosine protein phosphatases I Family:Low-molecular-weight phosphotyrosine protein phosphatases
91 | c1y8qA_ |
| not modelled | 34.3 | 16 | PDB header:ligase Chain: A: PDB Molecule:ubiquitin-like 1 activating enzyme e1a; PDBTitle: sumo e1 activating enzyme sae1-sae2-mg-atp complex
92 | d1iyea_ |
| not modelled | 34.2 | 18 | Fold:D-aminoacid aminotransferase-like PLP-dependent enzymes Superfamily:D-aminoacid aminotransferase-like PLP-dependent enzymes Family:D-aminoacid aminotransferase-like PLP-dependent enzymes
93 | c3rpeA_ |
| not modelled | 34.0 | 15 | PDB header:oxidoreductase Chain: A: PDB Molecule:modulator of drug activity b; PDBTitle: 1.1 angstrom crystal structure of putative modulator of drug activity2 (mdab) from yersinia pestis co92.
94 | c1gx7A_ |
| not modelled | 34.0 | 21 | PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic [fe] hydrogenase large subunit; PDBTitle: best model of the electron transfer complex between2 cytochrome c3 and [fe]-hydrogenase
95 | c1a3wB_ |
| not modelled | 33.2 | 22 | PDB header:transferase Chain: B: PDB Molecule:pyruvate kinase; PDBTitle: pyruvate kinase from saccharomyces cerevisiae complexed with fbp, pg,2 mn2+ and k+
96 | c3n8kG_ |
| not modelled | 32.8 | 16 | PDB header:lyase Chain: G: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: type ii dehydroquinase from mycobacterium tuberculosis complexed with2 citrazinic acid
97 | c3jviA_ |
| not modelled | 32.6 | 15 | PDB header:hydrolase Chain: A: PDB Molecule:protein tyrosine phosphatase; PDBTitle: product state mimic crystal structure of protein tyrosine phosphatase2 from entamoeba histolytica
98 | c2cwdA_ |
| not modelled | 32.3 | 26 | PDB header:hydrolase Chain: A: PDB Molecule:low molecular weight phosphotyrosine protein phosphatase; PDBTitle: crystal structure of tt1001 protein from thermus thermophilus hb8
99 | c2rejA_ |
| not modelled | 32.3 | 23 | PDB header:choline-binding protein Chain: A: PDB Molecule:putative glycine betaine abc transporter protein; PDBTitle: abc-transporter choline binding protein in unliganded semi-2 closed conformation
100 | d1s1ma1 |
| not modelled | 32.0 | 19 | Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT)
101 | c2akjA_ |
| not modelled | 31.6 | 17 | PDB header:oxidoreductase Chain: A: PDB Molecule:ferredoxin--nitrite reductase, chloroplast; PDBTitle: structure of spinach nitrite reductase
102 | c2an1D_ |
| not modelled | 31.3 | 24 | PDB header:transferase Chain: D: PDB Molecule:putative kinase; PDBTitle: structural genomics, the crystal structure of a putative kinase from2 salmonella typhimurim lt2
103 | d1pvva2 |
| not modelled | 31.1 | 12 | Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase
104 | c3lwzC_ |
| not modelled | 30.9 | 15 | PDB header:lyase Chain: C: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: 1.65 angstrom resolution crystal structure of type ii 3-2 dehydroquinate dehydratase (aroq) from yersinia pestis
105 | c3hd6A_ |
| not modelled | 30.8 | 11 | PDB header:membrane protein, transport protein Chain: A: PDB Molecule:ammonium transporter rh type c; PDBTitle: crystal structure of the human rhesus glycoprotein rhcg
106 | d1ekxa2 |
| not modelled | 30.6 | 13 | Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase
107 | d1liua2 |
| not modelled | 30.1 | 18 | Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Pyruvate kinase
108 | c3dmdA_ |
| not modelled | 29.8 | 19 | PDB header:transport protein Chain: A: PDB Molecule:signal recognition particle receptor; PDBTitle: structures and conformations in solution of the signal recognition2 particle receptor from the archaeon pyrococcus furiosus
109 | c2rjoA_ |
| not modelled | 29.2 | 9 | PDB header:signaling protein Chain: A: PDB Molecule:twin-arginine translocation pathway signal protein; PDBTitle: crystal structure of twin-arginine translocation pathway signal2 protein from burkholderia phytofirmans
110 | d1uqra_ |
| not modelled | 29.1 | 16 | Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase
111 | c3khdC_ |
| not modelled | 29.1 | 18 | PDB header:transferase Chain: C: PDB Molecule:pyruvate kinase; PDBTitle: crystal structure of pff1300w.
112 | c2eq8C_ |
| not modelled | 28.8 | 31 | PDB header:oxidoreductase Chain: C: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdp
113 | d3c7ba3 |
| not modelled | 27.7 | 11 | Fold:Nitrite and sulphite reductase 4Fe-4S domain-like Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like Family:Nitrite and sulphite reductase 4Fe-4S domain-like
114 | c1nekB_ |
| not modelled | 27.6 | 21 | PDB header:oxidoreductase/electron transport Chain: B: PDB Molecule:succinate dehydrogenase iron-sulfur protein; PDBTitle: complex ii (succinate dehydrogenase) from e. coli with2 ubiquinone bound
115 | c3chgB_ |
| not modelled | 27.1 | 22 | PDB header:ligand binding protein Chain: B: PDB Molecule:glycine betaine-binding protein; PDBTitle: the compatible solute-binding protein opuac from bacillus2 subtilis in complex with dmsa
116 | d2bcgg1 |
| not modelled | 26.8 | 18 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:GDI-like N domain
117 | c3t66A_ |
| not modelled | 26.8 | 13 | PDB header:transport protein Chain: A: PDB Molecule:nickel abc transporter (nickel-binding protein); PDBTitle: crystal structure of nickel abc transporter from bacillus halodurans
118 | d2fz5a1 |
| not modelled | 26.7 | 19 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related
119 | d1c0aa2 |
| not modelled | 26.5 | 20 | Fold:DCoH-like Superfamily:GAD domain-like Family:GAD domain
120 | c2eq9C_ |
| not modelled | 25.3 | 24 | PDB header:oxidoreductase Chain: C: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdb

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0