Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	V	D	T	T	Q	T	T	T	E	K	K	L	T	Q	S	D	I	R	G	V	F	L	R	S	N	L	F	Q	G	S	W	N	F	E	R	M	Q	A	L	G	F	C	F	S	M	V	P	A	I	R	R	L	Y	P	E	N	N	E	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?																																												?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		R	K	Q	A	I	R	R	H	L	E	F	F	N	T	Q	P	F	V	A	A	P	I	L	G	V	T	L	A	L	E	E	Q	R	A	N	G	A	E	I	D	D	G	A	I	N	G	I	K	V	G	L	M	G	P	L	A	G	V	G	D
Secondary structure
SS confidence
Disorder																																		?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		P	I	F	W	G	T	V	R	P	V	F	A	A	L	G	A	G	I	A	M	S	G	S	L	L	G	P	L	L	F	F	I	L	F	N	L	V	R	L	A	T	R	Y	Y	G	V	A	Y	G	Y	S	K	G	I	D	I	V	K	D	M
Secondary structure
SS confidence
Disorder																					?																																								?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		G	G	G	F	L	Q	K	L	T	E	G	A	S	I	L	G	L	F	V	M	G	A	L	V	N	K	W	T	H	V	N	I	P	L	V	V	S	R	I	T	D	Q	T	G	K	E	H	V	T	T	V	Q	T	I	L	D	Q	L	M	P
Secondary structure
SS confidence
Disorder																									?	?													?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Sequence		G	L	V	P	L	L	L	T	F	A	C	M	W	L	L	R	K	K	V	N	P	L	W	I	I	V	G	F	F	V	I	G	I	A	G	Y	A	C	G	L	L	G	L
Secondary structure
SS confidence
Disorder																																								?	?		?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2dmw chain A Region: 33 - 77 Aligned: 45 Modelled: 45 Confidence: 37.4% Identity: 20% PDB header:membrane protein Chain: A: PDB Molecule:synaptobrevin-like 1 variant; PDBTitle: solution structure of the longin domain of synaptobrevin-2 like protein 1 Phyre2 PDB 3aqp chain B Region: 238 - 274 Aligned: 37 Modelled: 37 Confidence: 23.9% Identity: 11% PDB header:membrane protein Chain: B: PDB Molecule:probable secdf protein-export membrane protein; PDBTitle: crystal structure of secdf, a translocon-associated membrane protein,2 from thermus thrmophilus Phyre2 PDB 1ljr chain A domain 1 Region: 51 - 118 Aligned: 64 Modelled: 68 Confidence: 21.6% Identity: 13% Fold: GST C-terminal domain-like Superfamily: GST C-terminal domain-like Family: Glutathione S-transferase (GST), C-terminal domain Phyre2 PDB 1iyx chain A domain 2 Region: 46 - 100 Aligned: 55 Modelled: 55 Confidence: 19.2% Identity: 24% Fold: Enolase N-terminal domain-like Superfamily: Enolase N-terminal domain-like Family: Enolase N-terminal domain-like Phyre2 PDB 2jtt chain D Region: 45 - 67 Aligned: 23 Modelled: 23 Confidence: 17.2% Identity: 13% PDB header:calcium binding protein/antitumor protei Chain: D: PDB Molecule:calcyclin-binding protein; PDBTitle: solution structure of calcium loaded s100a6 bound to c-2 terminal siah-1 interacting protein Phyre2 PDB 1zro chain B Region: 58 - 123 Aligned: 66 Modelled: 66 Confidence: 16.6% Identity: 12% PDB header:cell invasion Chain: B: PDB Molecule:erythrocyte binding antigen region ii; PDBTitle: crystal structure of eba-175 region ii (rii) crystallized2 in the presence of (alpha)2,3-sialyllactose Phyre2 PDB 3htk chain B Region: 43 - 82 Aligned: 39 Modelled: 40 Confidence: 15.8% Identity: 13% PDB header:recombination/replication/ligase Chain: B: PDB Molecule:structural maintenance of chromosomes protein 5; PDBTitle: crystal structure of mms21 and smc5 complex Phyre2 PDB 1v97 chain A domain 1 Region: 8 - 69 Aligned: 55 Modelled: 62 Confidence: 14.8% Identity: 20% Fold: CO dehydrogenase ISP C-domain like Superfamily: CO dehydrogenase ISP C-domain like Family: CO dehydrogenase ISP C-domain like Phyre2 PDB 1oai chain A Region: 18 - 36 Aligned: 19 Modelled: 19 Confidence: 13.9% Identity: 16% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: TAP-C domain-like Phyre2 PDB 1axd chain A domain 1 Region: 53 - 111 Aligned: 58 Modelled: 59 Confidence: 13.2% Identity: 16% Fold: GST C-terminal domain-like Superfamily: GST C-terminal domain-like Family: Glutathione S-transferase (GST), C-terminal domain Phyre2 PDB 1hh4 chain E Region: 88 - 120 Aligned: 31 Modelled: 33 Confidence: 13.1% Identity: 26% Fold: Immunoglobulin-like beta-sandwich Superfamily: E set domains Family: RhoGDI-like Phyre2 PDB 1yx5 chain A Region: 72 - 95 Aligned: 24 Modelled: 24 Confidence: 12.6% Identity: 29% PDB header:hydrolase Chain: A: PDB Molecule:26s proteasome non-atpase regulatory subunit 4; PDBTitle: solution structure of s5a uim-1/ubiquitin complex Phyre2 PDB 1yhu chain W Region: 36 - 116 Aligned: 76 Modelled: 81 Confidence: 11.2% Identity: 8% PDB header:oxygen storage/transport Chain: W: PDB Molecule:hemoglobin b1a chain; PDBTitle: crystal structure of riftia pachyptila c1 hemoglobin reveals novel2 assembly of 24 subunits. Phyre2 PDB 2i4r chain A domain 1 Region: 100 - 122 Aligned: 17 Modelled: 23 Confidence: 10.9% Identity: 35% Fold: AtpF-like Superfamily: AtpF-like Family: AtpF-like Phyre2 PDB 1ds6 chain B Region: 88 - 120 Aligned: 31 Modelled: 33 Confidence: 10.9% Identity: 29% Fold: Immunoglobulin-like beta-sandwich Superfamily: E set domains Family: RhoGDI-like Phyre2 PDB 3bd0 chain D Region: 52 - 70 Aligned: 19 Modelled: 19 Confidence: 10.8% Identity: 11% PDB header:peptide binding protein Chain: D: PDB Molecule:protein memo1; PDBTitle: crystal structure of memo, form ii Phyre2 PDB 3cx5 chain D domain 2 Region: 246 - 263 Aligned: 18 Modelled: 18 Confidence: 10.3% Identity: 17% Fold: Single transmembrane helix Superfamily: Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor Family: Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor Phyre2 PDB 1ppj chain D domain 2 Region: 246 - 263 Aligned: 18 Modelled: 18 Confidence: 10.2% Identity: 28% Fold: Single transmembrane helix Superfamily: Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor Family: Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor Phyre2 PDB 2j96 chain B Region: 54 - 72 Aligned: 18 Modelled: 19 Confidence: 10.0% Identity: 22% PDB header:photosynthesis Chain: B: PDB Molecule:phycoerythrocyanin alpha chain; PDBTitle: the e-configuration of alfa-phycoerythrocyanin Phyre2 PDB 3c9p chain A Region: 49 - 108 Aligned: 55 Modelled: 55 Confidence: 9.9% Identity: 24% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein sp1917; PDBTitle: crystal structure of uncharacterized protein sp1917 Phyre2 1 c2dmwA_ 2 c3aqpB_ 3 d1ljra1 4 d1iyxa2 5 c2jttD_ 6 c1zroB_ 7 c3htkB_ 8 d1v97a1 9 d1oaia_ 10 d1axda1 11 d1hh4e_ 12 c1yx5A_ 13 c1yhuW_ 14 d2i4ra1 15 d1ds6b_ 16 c3bd0D_ 17 d3cx5d2 18 d1ppjd2 19 c2j96B_ 20 c3c9pA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2dmwA_ 37.4 20 PDB header:membrane protein Chain: A: PDB Molecule:synaptobrevin-like 1 variant; PDBTitle: solution structure of the longin domain of synaptobrevin-2 like protein 1 2 c3aqpB_ 23.9 11 PDB header:membrane protein Chain: B: PDB Molecule:probable secdf protein-export membrane protein; PDBTitle: crystal structure of secdf, a translocon-associated membrane protein,2 from thermus thrmophilus 3 d1ljra1 21.6 13 Fold:GST C-terminal domain-like Superfamily:GST C-terminal domain-like Family:Glutathione S-transferase (GST), C-terminal domain 4 d1iyxa2 19.2 24 Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like 5 c2jttD_ 17.2 13 PDB header:calcium binding protein/antitumor protei Chain: D: PDB Molecule:calcyclin-binding protein; PDBTitle: solution structure of calcium loaded s100a6 bound to c-2 terminal siah-1 interacting protein 6 c1zroB_ 16.6 12 PDB header:cell invasion Chain: B: PDB Molecule:erythrocyte binding antigen region ii; PDBTitle: crystal structure of eba-175 region ii (rii) crystallized2 in the presence of (alpha)2,3-sialyllactose 7 c3htkB_ 15.8 13 PDB header:recombination/replication/ligase Chain: B: PDB Molecule:structural maintenance of chromosomes protein 5; PDBTitle: crystal structure of mms21 and smc5 complex 8 d1v97a1 14.8 20 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 9 d1oaia_ 13.9 16 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TAP-C domain-like 10 d1axda1 13.2 16 Fold:GST C-terminal domain-like Superfamily:GST C-terminal domain-like Family:Glutathione S-transferase (GST), C-terminal domain 11 d1hh4e_ 13.1 26 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:RhoGDI-like 12 c1yx5A_ 12.6 29 PDB header:hydrolase Chain: A: PDB Molecule:26s proteasome non-atpase regulatory subunit 4; PDBTitle: solution structure of s5a uim-1/ubiquitin complex 13 c1yhuW_ 11.2 8 PDB header:oxygen storage/transport Chain: W: PDB Molecule:hemoglobin b1a chain; PDBTitle: crystal structure of riftia pachyptila c1 hemoglobin reveals novel2 assembly of 24 subunits. 14 d2i4ra1 10.9 35 Fold:AtpF-like Superfamily:AtpF-like Family:AtpF-like 15 d1ds6b_ 10.9 29 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:RhoGDI-like 16 c3bd0D_ 10.8 11 PDB header:peptide binding protein Chain: D: PDB Molecule:protein memo1; PDBTitle: crystal structure of memo, form ii 17 d3cx5d2 10.3 17 Fold:Single transmembrane helix Superfamily:Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor Family:Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 18 d1ppjd2 10.2 28 Fold:Single transmembrane helix Superfamily:Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor Family:Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 19 c2j96B_ 10.0 22 PDB header:photosynthesis Chain: B: PDB Molecule:phycoerythrocyanin alpha chain; PDBTitle: the e-configuration of alfa-phycoerythrocyanin 20 c3c9pA_ 9.9 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein sp1917; PDBTitle: crystal structure of uncharacterized protein sp1917 21 c1l2aD_ not modelled 9.7 16 PDB header:hydrolase Chain: D: PDB Molecule:cellobiohydrolase; PDBTitle: the crystal structure and catalytic mechanism of2 cellobiohydrolase cels, the major enzymatic component of3 the clostridium thermocellum cellulosome 22 d1l1ya_ not modelled 9.7 16 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Cellulases catalytic domain 23 d1go5a_ not modelled 9.7 20 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TAP-C domain-like 24 d1vmja_ not modelled 9.4 23 Fold:YjbQ-like Superfamily:YjbQ-like Family:YjbQ-like 25 d1k3ra2 not modelled 9.3 19 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:Hypothetical protein MTH1 (MT0001), dimerisation domain 26 c2kdtA_ not modelled 9.3 50 PDB header:protein transport Chain: A: PDB Molecule:neuroendocrine convertase 1; PDBTitle: pc1/3 dcsg sorting domain structure in dpc 27 d1t3qa1 not modelled 9.1 11 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 28 d2ebfx1 not modelled 8.9 18 Fold:PMT central region-like Superfamily:PMT central region-like Family:PMT central region-like 29 d1xeqa1 not modelled 8.7 50 Fold:S15/NS1 RNA-binding domain Superfamily:S15/NS1 RNA-binding domain Family:N-terminal, RNA-binding domain of nonstructural protein NS1 30 c2vh3B_ not modelled 8.6 29 PDB header:unknown function Chain: B: PDB Molecule:ranasmurfin; PDBTitle: ranasmurfin 31 c3r66A_ not modelled 8.5 50 PDB header:viral protein/antiviral protein Chain: A: PDB Molecule:non-structural protein 1; PDBTitle: crystal structure of human isg15 in complex with ns1 n-terminal region2 from influenza virus b, northeast structural genomics consortium3 target ids hx6481, hr2873, and or2 32 d1t33a1 not modelled 8.3 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 33 c3cloC_ not modelled 8.3 14 PDB header:transcription regulator Chain: C: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator containing a2 luxr dna binding domain (np_811094.1) from bacteroides3 thetaiotaomicron vpi-5482 at 2.04 a resolution 34 c2qr4B_ not modelled 8.2 8 PDB header:hydrolase Chain: B: PDB Molecule:peptidase m3b, oligoendopeptidase f; PDBTitle: crystal structure of oligoendopeptidase-f from enterococcus faecium 35 c2jp7A_ not modelled 8.2 21 PDB header:translation Chain: A: PDB Molecule:mrna export factor mex67; PDBTitle: nmr structure of the mex67 uba domain 36 d1f1sa1 not modelled 8.1 21 Fold:alpha/alpha toroid Superfamily:Chondroitin AC/alginate lyase Family:Hyaluronate lyase-like catalytic, N-terminal domain 37 d1s29a_ not modelled 8.1 27 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:La domain 38 d1doab_ not modelled 8.0 26 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:RhoGDI-like 39 d1r2za1 not modelled 7.9 36 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 40 d1q33a_ not modelled 7.9 12 Fold:Nudix Superfamily:Nudix Family:MutT-like 41 c1bm4A_ not modelled 7.8 38 PDB header:viral protein Chain: A: PDB Molecule:protein (moloney murine leukemia virus capsid); PDBTitle: momlv capsid protein major homology region peptide analog 42 d1vi0a2 not modelled 7.6 15 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 43 d1u7ka_ not modelled 7.4 20 Fold:Retrovirus capsid protein, N-terminal core domain Superfamily:Retrovirus capsid protein, N-terminal core domain Family:Retrovirus capsid protein, N-terminal core domain 44 d1ee8a1 not modelled 7.4 43 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 45 d1j2za_ not modelled 7.3 19 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:UDP N-acetylglucosamine acyltransferase 46 d1g9ga_ not modelled 7.2 16 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Cellulases catalytic domain 47 c2rrfA_ not modelled 7.2 35 PDB header:unknown function Chain: A: PDB Molecule:zinc finger fyve domain-containing protein 21; PDBTitle: the solution structure of the c-terminal region of zinc finger fyve2 domain-containing protein 21 48 c1wyoA_ not modelled 7.1 17 PDB header:structural protein Chain: A: PDB Molecule:microtubule-associated protein rp/eb family PDBTitle: solution structure of the ch domain of human microtubule-2 associated protein rp/eb family member 3 49 d1utga_ not modelled 7.1 18 Fold:Uteroglobin-like Superfamily:Uteroglobin-like Family:Uteroglobin-like 50 d1rm6c1 not modelled 7.0 15 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 51 d2cqka1 not modelled 7.0 33 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:La domain 52 c2r8uA_ not modelled 6.9 20 PDB header:cell cycle Chain: A: PDB Molecule:microtubule-associated protein rp/eb family PDBTitle: structure of fragment of human end-binding protein 1 (eb1)2 containing the n-terminal domain at 1.35 a resolution 53 c2p6cB_ not modelled 6.8 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:aq_2013 protein; PDBTitle: crystal structure of hypothetical protein aq_2013 from aquifex2 aeolicus vf5. 54 d1i3da_ not modelled 6.6 14 Fold:Globin-like Superfamily:Globin-like Family:Globins 55 d1cb8a1 not modelled 6.5 12 Fold:alpha/alpha toroid Superfamily:Chondroitin AC/alginate lyase Family:Hyaluronate lyase-like catalytic, N-terminal domain 56 c2veqA_ not modelled 6.4 40 PDB header:cell cycle Chain: A: PDB Molecule:centromere dna-binding protein complex cbf3 PDBTitle: insights into kinetochore-dna interactions from the2 structure of cep3p 57 c1x1jA_ not modelled 6.3 23 PDB header:lyase Chain: A: PDB Molecule:xanthan lyase; PDBTitle: crystal structure of xanthan lyase (n194a) with a substrate. 58 d1w6ta2 not modelled 6.1 24 Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like 59 c3n8bB_ not modelled 6.0 13 PDB header:nucleic acid binding protein Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of borrelia burgdorferi pur-alpha 60 c1rm6F_ not modelled 6.0 16 PDB header:oxidoreductase Chain: F: PDB Molecule:4-hydroxybenzoyl-coa reductase gamma subunit; PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica 61 d1l2la_ not modelled 5.9 36 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase 62 d1jroa1 not modelled 5.9 16 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 63 d2h8aa1 not modelled 5.8 15 Fold:MAPEG domain-like Superfamily:MAPEG domain-like Family:MAPEG domain 64 c3zvrA_ not modelled 5.8 17 PDB header:hydrolase Chain: A: PDB Molecule:dynamin-1; PDBTitle: crystal structure of dynamin 65 d1m22a_ not modelled 5.8 25 Fold:Amidase signature (AS) enzymes Superfamily:Amidase signature (AS) enzymes Family:Amidase signature (AS) enzymes 66 d1alla_ not modelled 5.7 18 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins 67 d1tw9a1 not modelled 5.7 12 Fold:GST C-terminal domain-like Superfamily:GST C-terminal domain-like Family:Glutathione S-transferase (GST), C-terminal domain 68 c1cb8A_ not modelled 5.6 5 PDB header:lyase Chain: A: PDB Molecule:protein (chondroitinase ac); PDBTitle: chondroitinase ac lyase from flavobacterium heparinum 69 c3nm7D_ not modelled 5.6 13 PDB header:nucleic acid binding protein Chain: D: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of borrelia burgdorferi pur-alpha 70 c2rddB_ not modelled 5.5 11 PDB header:membrane protein/transport protein Chain: B: PDB Molecule:upf0092 membrane protein yajc; PDBTitle: x-ray crystal structure of acrb in complex with a novel2 transmembrane helix. 71 c1q0wA_ not modelled 5.5 40 PDB header:transport protein Chain: A: PDB Molecule:vacuolar protein sorting-associated protein PDBTitle: solution structure of vps27 amino-terminal uim-ubiquitin2 complex 72 d1n9wa2 not modelled 5.4 21 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 73 d1ccda_ not modelled 5.4 15 Fold:Uteroglobin-like Superfamily:Uteroglobin-like Family:Uteroglobin-like 74 c3snhA_ not modelled 5.3 17 PDB header:endocytosis Chain: A: PDB Molecule:dynamin-1; PDBTitle: crystal structure of nucleotide-free human dynamin1 75 c1k3rA_ not modelled 5.3 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein mt0001; PDBTitle: crystal structure of the methyltransferase with a knot from2 methanobacterium thermoautotrophicum 76 d1ffva1 not modelled 5.2 9 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 77 d1k1xa1 not modelled 5.1 26 Fold:immunoglobulin/albumin-binding domain-like Superfamily:Families 57/38 glycoside transferase middle domain Family:4-alpha-glucanotransferase, domain 2 78 c3b9yA_ not modelled 5.1 10 PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter family rh-like protein; PDBTitle: crystal structure of the nitrosomonas europaea rh protein

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0