Phyre 2 Results for P69805

Email | l.a.kelley@imperial.ac.uk
Description | P69805
Date | Thu Jan 5 12:12:01 GMT 2012
Unique Job ID | faecc54ca0d9980c

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c2dmwA_ |
|  | 37.4 | 20 | PDB header:membrane protein Chain: A: PDB Molecule:synaptobrevin-like 1 variant; PDBTitle: solution structure of the longin domain of synaptobrevin-2 like protein 1
2 | c3aqpB_ |
|  | 23.9 | 11 | PDB header:membrane protein Chain: B: PDB Molecule:probable secdf protein-export membrane protein; PDBTitle: crystal structure of secdf, a translocon-associated membrane protein,2 from thermus thrmophilus
3 | d1ljra1 |
|  | 21.6 | 13 | Fold:GST C-terminal domain-like Superfamily:GST C-terminal domain-like Family:Glutathione S-transferase (GST), C-terminal domain
4 | d1iyxa2 |
|  | 19.2 | 24 | Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like
5 | c2jttD_ |
|  | 17.2 | 13 | PDB header:calcium binding protein/antitumor protei Chain: D: PDB Molecule:calcyclin-binding protein; PDBTitle: solution structure of calcium loaded s100a6 bound to c-2 terminal siah-1 interacting protein
6 | c1zroB_ |
|  | 16.6 | 12 | PDB header:cell invasion Chain: B: PDB Molecule:erythrocyte binding antigen region ii; PDBTitle: crystal structure of eba-175 region ii (rii) crystallized2 in the presence of (alpha)2,3-sialyllactose
7 | c3htkB_ |
|  | 15.8 | 13 | PDB header:recombination/replication/ligase Chain: B: PDB Molecule:structural maintenance of chromosomes protein 5; PDBTitle: crystal structure of mms21 and smc5 complex
8 | d1v97a1 |
|  | 14.8 | 20 | Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like
9 | d1oaia_ |
|  | 13.9 | 16 | Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TAP-C domain-like
10 | d1axda1 |
|  | 13.2 | 16 | Fold:GST C-terminal domain-like Superfamily:GST C-terminal domain-like Family:Glutathione S-transferase (GST), C-terminal domain
11 | d1hh4e_ |
|  | 13.1 | 26 | Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:RhoGDI-like
12 | c1yx5A_ |
|  | 12.6 | 29 | PDB header:hydrolase Chain: A: PDB Molecule:26s proteasome non-atpase regulatory subunit 4; PDBTitle: solution structure of s5a uim-1/ubiquitin complex
13 | c1yhuW_ |
|  | 11.2 | 8 | PDB header:oxygen storage/transport Chain: W: PDB Molecule:hemoglobin b1a chain; PDBTitle: crystal structure of riftia pachyptila c1 hemoglobin reveals novel2 assembly of 24 subunits.
14 | d2i4ra1 |
|  | 10.9 | 35 | Fold:AtpF-like Superfamily:AtpF-like Family:AtpF-like
15 | d1ds6b_ |
|  | 10.9 | 29 | Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:RhoGDI-like
16 | c3bd0D_ |
|  | 10.8 | 11 | PDB header:peptide binding protein Chain: D: PDB Molecule:protein memo1; PDBTitle: crystal structure of memo, form ii
17 | d3cx5d2 |
|  | 10.3 | 17 | Fold:Single transmembrane helix Superfamily:Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor Family:Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
18 | d1ppjd2 |
|  | 10.2 | 28 | Fold:Single transmembrane helix Superfamily:Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor Family:Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
19 | c2j96B_ |
|  | 10.0 | 22 | PDB header:photosynthesis Chain: B: PDB Molecule:phycoerythrocyanin alpha chain; PDBTitle: the e-configuration of alfa-phycoerythrocyanin
20 | c3c9pA_ |
|  | 9.9 | 24 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein sp1917; PDBTitle: crystal structure of uncharacterized protein sp1917
21 | c1l2aD_ |
| not modelled | 9.7 | 16 | PDB header:hydrolase Chain: D: PDB Molecule:cellobiohydrolase; PDBTitle: the crystal structure and catalytic mechanism of2 cellobiohydrolase cels, the major enzymatic component of3 the clostridium thermocellum cellulosome
22 | d1l1ya_ |
| not modelled | 9.7 | 16 | Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Cellulases catalytic domain
23 | d1go5a_ |
| not modelled | 9.7 | 20 | Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TAP-C domain-like
24 | d1vmja_ |
| not modelled | 9.4 | 23 | Fold:YjbQ-like Superfamily:YjbQ-like Family:YjbQ-like
25 | d1k3ra2 |
| not modelled | 9.3 | 19 | Fold:alpha/beta knot Superfamily:alpha/beta knot Family:Hypothetical protein MTH1 (MT0001), dimerisation domain
26 | c2kdtA_ |
| not modelled | 9.3 | 50 | PDB header:protein transport Chain: A: PDB Molecule:neuroendocrine convertase 1; PDBTitle: pc1/3 dcsg sorting domain structure in dpc
27 | d1t3qa1 |
| not modelled | 9.1 | 11 | Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like
28 | d2ebfx1 |
| not modelled | 8.9 | 18 | Fold:PMT central region-like Superfamily:PMT central region-like Family:PMT central region-like
29 | d1xeqa1 |
| not modelled | 8.7 | 50 | Fold:S15/NS1 RNA-binding domain Superfamily:S15/NS1 RNA-binding domain Family:N-terminal, RNA-binding domain of nonstructural protein NS1
30 | c2vh3B_ |
| not modelled | 8.6 | 29 | PDB header:unknown function Chain: B: PDB Molecule:ranasmurfin; PDBTitle: ranasmurfin
31 | c3r66A_ |
| not modelled | 8.5 | 50 | PDB header:viral protein/antiviral protein Chain: A: PDB Molecule:non-structural protein 1; PDBTitle: crystal structure of human isg15 in complex with ns1 n-terminal region2 from influenza virus b, northeast structural genomics consortium3 target ids hx6481, hr2873, and or2
32 | d1t33a1 |
| not modelled | 8.3 | 14 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain
33 | c3cloC_ |
| not modelled | 8.3 | 14 | PDB header:transcription regulator Chain: C: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator containing a2 luxr dna binding domain (np_811094.1) from bacteroides3 thetaiotaomicron vpi-5482 at 2.04 a resolution
34 | c2qr4B_ |
| not modelled | 8.2 | 8 | PDB header:hydrolase Chain: B: PDB Molecule:peptidase m3b, oligoendopeptidase f; PDBTitle: crystal structure of oligoendopeptidase-f from enterococcus faecium
35 | c2jp7A_ |
| not modelled | 8.2 | 21 | PDB header:translation Chain: A: PDB Molecule:mrna export factor mex67; PDBTitle: nmr structure of the mex67 uba domain
36 | d1f1sa1 |
| not modelled | 8.1 | 21 | Fold:alpha/alpha toroid Superfamily:Chondroitin AC/alginate lyase Family:Hyaluronate lyase-like catalytic, N-terminal domain
37 | d1s29a_ |
| not modelled | 8.1 | 27 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:La domain
38 | d1doab_ |
| not modelled | 8.0 | 26 | Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:RhoGDI-like
39 | d1r2za1 |
| not modelled | 7.9 | 36 | Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins
40 | d1q33a_ |
| not modelled | 7.9 | 12 | Fold:Nudix Superfamily:Nudix Family:MutT-like
41 | c1bm4A_ |
| not modelled | 7.8 | 38 | PDB header:viral protein Chain: A: PDB Molecule:protein (moloney murine leukemia virus capsid); PDBTitle: momlv capsid protein major homology region peptide analog
42 | d1vi0a2 |
| not modelled | 7.6 | 15 | Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain
43 | d1u7ka_ |
| not modelled | 7.4 | 20 | Fold:Retrovirus capsid protein, N-terminal core domain Superfamily:Retrovirus capsid protein, N-terminal core domain Family:Retrovirus capsid protein, N-terminal core domain
44 | d1ee8a1 |
| not modelled | 7.4 | 43 | Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins
45 | d1j2za_ |
| not modelled | 7.3 | 19 | Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:UDP N-acetylglucosamine acyltransferase
46 | d1g9ga_ |
| not modelled | 7.2 | 16 | Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Cellulases catalytic domain
47 | c2rrfA_ |
| not modelled | 7.2 | 35 | PDB header:unknown function Chain: A: PDB Molecule:zinc finger fyve domain-containing protein 21; PDBTitle: the solution structure of the c-terminal region of zinc finger fyve2 domain-containing protein 21
48 | c1wyoA_ |
| not modelled | 7.1 | 17 | PDB header:structural protein Chain: A: PDB Molecule:microtubule-associated protein rp/eb family PDBTitle: solution structure of the ch domain of human microtubule-2 associated protein rp/eb family member 3
49 | d1utga_ |
| not modelled | 7.1 | 18 | Fold:Uteroglobin-like Superfamily:Uteroglobin-like Family:Uteroglobin-like
50 | d1rm6c1 |
| not modelled | 7.0 | 15 | Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like
51 | d2cqka1 |
| not modelled | 7.0 | 33 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:La domain
52 | c2r8uA_ |
| not modelled | 6.9 | 20 | PDB header:cell cycle Chain: A: PDB Molecule:microtubule-associated protein rp/eb family PDBTitle: structure of fragment of human end-binding protein 1 (eb1)2 containing the n-terminal domain at 1.35 a resolution
53 | c2p6cB_ |
| not modelled | 6.8 | 19 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:aq_2013 protein; PDBTitle: crystal structure of hypothetical protein aq_2013 from aquifex2 aeolicus vf5.
54 | d1i3da_ |
| not modelled | 6.6 | 14 | Fold:Globin-like Superfamily:Globin-like Family:Globins
55 | d1cb8a1 |
| not modelled | 6.5 | 12 | Fold:alpha/alpha toroid Superfamily:Chondroitin AC/alginate lyase Family:Hyaluronate lyase-like catalytic, N-terminal domain
56 | c2veqA_ |
| not modelled | 6.4 | 40 | PDB header:cell cycle Chain: A: PDB Molecule:centromere dna-binding protein complex cbf3 PDBTitle: insights into kinetochore-dna interactions from the2 structure of cep3p
57 | c1x1jA_ |
| not modelled | 6.3 | 23 | PDB header:lyase Chain: A: PDB Molecule:xanthan lyase; PDBTitle: crystal structure of xanthan lyase (n194a) with a substrate.
58 | d1w6ta2 |
| not modelled | 6.1 | 24 | Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like
59 | c3n8bB_ |
| not modelled | 6.0 | 13 | PDB header:nucleic acid binding protein Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of borrelia burgdorferi pur-alpha
60 | c1rm6F_ |
| not modelled | 6.0 | 16 | PDB header:oxidoreductase Chain: F: PDB Molecule:4-hydroxybenzoyl-coa reductase gamma subunit; PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica
61 | d1l2la_ |
| not modelled | 5.9 | 36 | Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase
62 | d1jroa1 |
| not modelled | 5.9 | 16 | Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like
63 | d2h8aa1 |
| not modelled | 5.8 | 15 | Fold:MAPEG domain-like Superfamily:MAPEG domain-like Family:MAPEG domain
64 | c3zvrA_ |
| not modelled | 5.8 | 17 | PDB header:hydrolase Chain: A: PDB Molecule:dynamin-1; PDBTitle: crystal structure of dynamin
65 | d1m22a_ |
| not modelled | 5.8 | 25 | Fold:Amidase signature (AS) enzymes Superfamily:Amidase signature (AS) enzymes Family:Amidase signature (AS) enzymes
66 | d1alla_ |
| not modelled | 5.7 | 18 | Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins
67 | d1tw9a1 |
| not modelled | 5.7 | 12 | Fold:GST C-terminal domain-like Superfamily:GST C-terminal domain-like Family:Glutathione S-transferase (GST), C-terminal domain
68 | c1cb8A_ |
| not modelled | 5.6 | 5 | PDB header:lyase Chain: A: PDB Molecule:protein (chondroitinase ac); PDBTitle: chondroitinase ac lyase from flavobacterium heparinum
69 | c3nm7D_ |
| not modelled | 5.6 | 13 | PDB header:nucleic acid binding protein Chain: D: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of borrelia burgdorferi pur-alpha
70 | c2rddB_ |
| not modelled | 5.5 | 11 | PDB header:membrane protein/transport protein Chain: B: PDB Molecule:upf0092 membrane protein yajc; PDBTitle: x-ray crystal structure of acrb in complex with a novel2 transmembrane helix.
71 | c1q0wA_ |
| not modelled | 5.5 | 40 | PDB header:transport protein Chain: A: PDB Molecule:vacuolar protein sorting-associated protein PDBTitle: solution structure of vps27 amino-terminal uim-ubiquitin2 complex
72 | d1n9wa2 |
| not modelled | 5.4 | 21 | Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
73 | d1ccda_ |
| not modelled | 5.4 | 15 | Fold:Uteroglobin-like Superfamily:Uteroglobin-like Family:Uteroglobin-like
74 | c3snhA_ |
| not modelled | 5.3 | 17 | PDB header:endocytosis Chain: A: PDB Molecule:dynamin-1; PDBTitle: crystal structure of nucleotide-free human dynamin1
75 | c1k3rA_ |
| not modelled | 5.3 | 19 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein mt0001; PDBTitle: crystal structure of the methyltransferase with a knot from2 methanobacterium thermoautotrophicum
76 | d1ffva1 |
| not modelled | 5.2 | 9 | Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like
77 | d1k1xa1 |
| not modelled | 5.1 | 26 | Fold:immunoglobulin/albumin-binding domain-like Superfamily:Families 57/38 glycoside transferase middle domain Family:4-alpha-glucanotransferase, domain 2
78 | c3b9yA_ |
| not modelled | 5.1 | 10 | PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter family rh-like protein; PDBTitle: crystal structure of the nitrosomonas europaea rh protein